Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-15 11:47:04 (25804): Detected: vboxwrapper 26206
2023-03-15 11:47:04 (25804): Detected: BOINC client v7.20.2
2023-03-15 11:47:05 (25804): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2023-03-15 11:47:05 (25804): Successfully copied 'init_data.xml' to the shared directory.
2023-03-15 11:47:06 (25804): Create VM. (boinc_5572493a1fb45588, slot#37)
2023-03-15 11:47:06 (25804): Setting Memory Size for VM. (7500MB)
2023-03-15 11:47:06 (25804): Setting CPU Count for VM. (5)
2023-03-15 11:47:07 (25804): Setting Chipset Options for VM.
2023-03-15 11:47:07 (25804): Setting Graphics Controller Options for VM.
2023-03-15 11:47:07 (25804): Setting Boot Options for VM.
2023-03-15 11:47:07 (25804): Setting Network Configuration for NAT.
2023-03-15 11:47:08 (25804): Enabling VM Network Access.
2023-03-15 11:47:08 (25804): Disabling USB Support for VM.
2023-03-15 11:47:08 (25804): Disabling COM Port Support for VM.
2023-03-15 11:47:08 (25804): Disabling LPT Port Support for VM.
2023-03-15 11:47:09 (25804): Disabling Audio Support for VM.
2023-03-15 11:47:09 (25804): Disabling Clipboard Support for VM.
2023-03-15 11:47:09 (25804): Disabling Drag and Drop Support for VM.
2023-03-15 11:47:09 (25804): Adding storage controller(s) to VM.
2023-03-15 11:47:10 (25804): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-15 11:47:10 (25804): Adding VirtualBox Guest Additions to VM.
2023-03-15 11:47:10 (25804): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-15 11:47:11 (25804): forwarding host port 63875 to guest port 80
2023-03-15 11:47:11 (25804): Enabling remote desktop for VM.
2023-03-15 11:47:11 (25804): Enabling shared directory for VM.
2023-03-15 11:47:12 (25804): Starting VM using VBoxManage interface. (boinc_5572493a1fb45588, slot#37)
2023-03-15 11:47:18 (25804): Successfully started VM. (PID = '10928')
2023-03-15 11:47:18 (25804): Reporting VM Process ID to BOINC.
2023-03-15 11:47:18 (25804): Guest Log: BIOS: VirtualBox 6.1.40
2023-03-15 11:47:18 (25804): Guest Log: CPUID EDX: 0x178bfbff
2023-03-15 11:47:18 (25804): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-03-15 11:47:18 (25804): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-15 11:47:18 (25804): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-15 11:47:18 (25804): Detected: Web Application Enabled (http://localhost:63875)
2023-03-15 11:47:18 (25804): Detected: Remote Desktop Enabled (localhost:63877)
2023-03-15 11:47:18 (25804): Preference change detected
2023-03-15 11:47:18 (25804): Setting CPU throttle for VM. (100%)
2023-03-15 11:47:18 (25804): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-15 11:47:20 (25804): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-15 11:47:20 (25804): Guest Log: BIOS: Booting from Hard Disk...
2023-03-15 11:47:24 (25804): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-15 11:47:24 (25804): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-15 11:47:24 (25804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-15 11:47:36 (25804): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-15 11:47:36 (25804): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-15 11:47:48 (25804): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-15 11:47:48 (25804): Guest Log: 00:00:00.000230 main     Log opened 2023-03-15T11:47:46.960438000Z
2023-03-15 11:47:48 (25804): Guest Log: 00:00:00.000345 main     OS Product: Linux
2023-03-15 11:47:48 (25804): Guest Log: 00:00:00.000376 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-15 11:47:48 (25804): Guest Log: 00:00:00.000402 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-15 11:47:48 (25804): Guest Log: 00:00:00.000426 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-15 11:47:48 (25804): Guest Log: 00:00:00.000427 main     Process ID: 1412
2023-03-15 11:47:48 (25804): Guest Log: 00:00:00.000427 main     Package type: LINUX_64BITS_GENERIC
2023-03-15 11:47:48 (25804): Guest Log: 00:00:00.001658 main     5.2.32 r132073 started. Verbose level = 0
2023-03-15 11:47:48 (25804): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-15 11:47:48 (25804): Guest Log: [INFO] Mounting shared directory
2023-03-15 11:47:48 (25804): Guest Log: [INFO] Checking for init_data.xml
2023-03-15 11:47:51 (25804): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-15 11:47:51 (25804): Guest Log: [INFO] Detected branch: dev
2023-03-15 11:47:51 (25804): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-15 11:47:51 (25804): Guest Log: Copying input files
2023-03-15 11:47:58 (25804): Guest Log: 00:00:10.026375 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 020 629 000ns (GuestNow=1 678 877 277 942 907 000 ns GuestLast=1 678 880 866 963 536 000 ns fSetTimeLastLoop=true )
2023-03-15 11:48:04 (25804): Guest Log: Copied input files into RunAtlas.
2023-03-15 11:48:04 (25804): Guest Log: Detected user-configured HTTP proxy at http://10.116.178.201:3128 - will set in /etc/cvmfs/default.local
2023-03-15 11:48:11 (25804): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-15 11:48:11 (25804): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-15 11:48:11 (25804): Guest Log: 2.6.3.0 1688 0 29584 116766 4 1 3116421 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
2023-03-15 11:48:12 (25804): Guest Log: copied the webapp to /var/www
2023-03-15 11:48:12 (25804): Guest Log: ATHENA_PROC_NUMBER=5
2023-03-15 11:48:12 (25804): Guest Log: ATHENA_CORE_NUMBER=5
2023-03-15 11:48:12 (25804): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-15 11:48:12 (25804): Guest Log:  *** Starting ATLAS job. (PandaID=5753961892 taskID=32413688) ***
2023-03-15 13:27:25 (25804): Status Report: Elapsed Time: '6000.000000'
2023-03-15 13:27:25 (25804): Status Report: CPU Time: '23854.656250'
2023-03-15 14:04:19 (25804): Guest Log:  *** Job finished ***
2023-03-15 14:04:19 (25804): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:03:38,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:03:41,220 | INFO     | [data] queue_monitor thread has finished
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:03:45,997 | INFO     | job.realtimelogging is not enabled
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:03:45,997 | INFO     | [payload] run_realtimelog thread has finished
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,508 | WARNING  | no jobs in monitored_payloads queue (waited for 78 s)
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,508 | INFO     | [job] job monitor thread has finished
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,529 | INFO     | end of generic workflow (traces error code: 0)
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,529 | INFO     | traces error code: 0
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,529 | INFO     | pilot has finished
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,574 [wrapper] ==== pilot stdout END ====
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,580 [wrapper] ==== wrapper stdout RESUME ====
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,586 [wrapper] pilotpid: 5527
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,591 [wrapper] Pilot exit status: 0
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,702 [wrapper] pandaids: 5753961892
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,716 [wrapper] apfmon messages muted
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,723 [wrapper] Test setup, not cleaning
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,729 [wrapper] ==== wrapper stdout END ====
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,735 [wrapper] ==== wrapper stderr END ====
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,747 [wrapper] wrapperexiting ec=0, duration=8158
2023-03-15 14:04:19 (25804): Guest Log: 2023-03-15 13:04:14,753 [wrapper] apfmon messages muted
2023-03-15 14:04:19 (25804): Guest Log:  *** Error codes and diagnostics ***
2023-03-15 14:04:19 (25804): Guest Log:     "exeErrorCode": 0,
2023-03-15 14:04:19 (25804): Guest Log:     "exeErrorDiag": "",
2023-03-15 14:04:19 (25804): Guest Log:     "pilotErrorCode": 0,
2023-03-15 14:04:19 (25804): Guest Log:     "pilotErrorDiag": "",
2023-03-15 14:04:19 (25804): Guest Log:  *** Listing of results directory ***
2023-03-15 14:04:19 (25804): Guest Log: total 301444
2023-03-15 14:04:19 (25804): Guest Log: -rw-r--r--. 1 atlas atlas    386707 Mar 15 08:36 pilot3.tar.gz
2023-03-15 14:04:19 (25804): Guest Log: -rw-r--r--. 1 atlas atlas      4332 Mar 15 08:44 queuedata.json
2023-03-15 14:04:19 (25804): Guest Log: -rwx------. 1 atlas atlas     26447 Mar 15 08:45 runpilot2-wrapper.sh
2023-03-15 14:04:19 (25804): Guest Log: -rwxr-xr-x. 1 atlas atlas      8878 Mar 15 10:48 init_data.xml
2023-03-15 14:04:19 (25804): Guest Log: -rwxr-xr-x. 1 atlas atlas    398354 Mar 15 10:48 input.tar.gz
2023-03-15 14:04:19 (25804): Guest Log: -rwxr-xr-x. 1 atlas atlas     17279 Mar 15 10:48 start_atlas.sh
2023-03-15 14:04:19 (25804): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 15 10:48 EVNT.29838250._000010.pool.root.1 -> /data/./ATLAS.root_0
2023-03-15 14:04:19 (25804): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Mar 15 10:48 pandaJob.out
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas       449 Mar 15 10:48 setup.sh.local
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas    972211 Mar 15 10:49 agis_schedconf.cvmfs.json
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas   1425877 Mar 15 10:49 agis_ddmendpoints.agis.ALL.json
2023-03-15 14:04:19 (25804): Guest Log: drwx------. 4 atlas atlas       245 Mar 15 10:49 pilot3
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas 304235199 Mar 15 13:03 HITS.32413688._000229-101714-1678869927.pool.root.1
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas      1030 Mar 15 13:03 memory_monitor_summary.json
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas    276881 Mar 15 13:03 log.32413688._000229-101714-1678869927.job.log.tgz.1
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas      7723 Mar 15 13:03 heartbeat.json
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas      2926 Mar 15 13:04 pilotlog.txt
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas    273659 Mar 15 13:04 log.32413688._000229-101714-1678869927.job.log.1
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas       399 Mar 15 13:04 output.list
2023-03-15 14:04:19 (25804): Guest Log: -rw-r--r--. 1 atlas atlas       674 Mar 15 13:04 runtime_log
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas    573440 Mar 15 13:04 result.tar.gz
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas       640 Mar 15 13:04 YyjNDmOwbw2n7Olcko1bjSoqABFKDmABFKDm7AsVDmjOGKDmkeu7Cn.diag
2023-03-15 14:04:19 (25804): Guest Log: -rw-r--r--. 1 atlas atlas     10980 Mar 15 13:04 runtime_log.err
2023-03-15 14:04:19 (25804): Guest Log: Looking for outputfile HITS.32413688._000229-101714-1678869927.pool.root.1
2023-03-15 14:04:19 (25804): Guest Log: HITS file was successfully produced
2023-03-15 14:04:19 (25804): Guest Log: -rw-------. 1 atlas atlas 304235199 Mar 15 13:03 /home/atlas/RunAtlas/HITS.32413688._000229-101714-1678869927.pool.root.1
2023-03-15 14:04:21 (25804): Guest Log: Successfully finished the ATLAS job!
2023-03-15 14:04:21 (25804): Guest Log: Copying the results back to the shared directory!
2023-03-15 14:04:21 (25804): Guest Log:  *** Contents of shared directory: ***
2023-03-15 14:04:21 (25804): Guest Log: total 724248
2023-03-15 14:04:21 (25804): Guest Log: -rwxrwxrwx. 1 root root 436382292 Mar 15 10:47 ATLAS.root_0
2023-03-15 14:04:21 (25804): Guest Log: -rwxrwxrwx. 1 root root 304235199 Mar 15 13:03 HITS.pool.root.1
2023-03-15 14:04:21 (25804): Guest Log: -rwxrwxrwx. 1 root root      8878 Mar 15 10:47 init_data.xml
2023-03-15 14:04:21 (25804): Guest Log: -rwxrwxrwx. 1 root root    398354 Mar 15 10:31 input.tar.gz
2023-03-15 14:04:21 (25804): Guest Log: -rwxrwxrwx. 1 root root    573440 Mar 15  2023 result.tar.gz
2023-03-15 14:04:21 (25804): Guest Log: -rwxrwxrwx. 1 root root     17279 Mar 15 10:31 start_atlas.sh
2023-03-15 14:04:21 (25804): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-15 14:04:21 (25804): VM Completion File Detected.
2023-03-15 14:04:21 (25804): Powering off VM.
2023-03-15 14:04:23 (25804): Successfully stopped VM.
2023-03-15 14:04:23 (25804): Deregistering VM. (boinc_5572493a1fb45588, slot#37)
2023-03-15 14:04:23 (25804): Removing network bandwidth throttle group from VM.
2023-03-15 14:04:23 (25804): Removing VM from VirtualBox.
14:04:29 (25804): called boinc_finish(0)

</stderr_txt>
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