Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-17 16:47:11 (6548): Detected: vboxwrapper 26206
2023-03-17 16:47:11 (6548): Detected: BOINC client v7.20.2
2023-03-17 16:47:11 (6548): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2023-03-17 16:47:12 (6548): Successfully copied 'init_data.xml' to the shared directory.
2023-03-17 16:47:12 (6548): Create VM. (boinc_344e3d2755768b9f, slot#1)
2023-03-17 16:47:13 (6548): Setting Memory Size for VM. (2241MB)
2023-03-17 16:47:13 (6548): Setting CPU Count for VM. (5)
2023-03-17 16:47:13 (6548): Setting Chipset Options for VM.
2023-03-17 16:47:14 (6548): Setting Graphics Controller Options for VM.
2023-03-17 16:47:14 (6548): Setting Boot Options for VM.
2023-03-17 16:47:14 (6548): Setting Network Configuration for NAT.
2023-03-17 16:47:14 (6548): Enabling VM Network Access.
2023-03-17 16:47:15 (6548): Disabling USB Support for VM.
2023-03-17 16:47:15 (6548): Disabling COM Port Support for VM.
2023-03-17 16:47:15 (6548): Disabling LPT Port Support for VM.
2023-03-17 16:47:16 (6548): Disabling Audio Support for VM.
2023-03-17 16:47:16 (6548): Disabling Clipboard Support for VM.
2023-03-17 16:47:16 (6548): Disabling Drag and Drop Support for VM.
2023-03-17 16:47:16 (6548): Adding storage controller(s) to VM.
2023-03-17 16:47:17 (6548): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-17 16:47:17 (6548): Adding VirtualBox Guest Additions to VM.
2023-03-17 16:47:17 (6548): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-17 16:47:18 (6548): forwarding host port 58240 to guest port 80
2023-03-17 16:47:18 (6548): Enabling remote desktop for VM.
2023-03-17 16:47:19 (6548): Enabling shared directory for VM.
2023-03-17 16:47:19 (6548): Starting VM using VBoxManage interface. (boinc_344e3d2755768b9f, slot#1)
2023-03-17 16:47:26 (6548): Successfully started VM. (PID = '9828')
2023-03-17 16:47:26 (6548): Reporting VM Process ID to BOINC.
2023-03-17 16:47:26 (6548): Guest Log: BIOS: VirtualBox 6.1.40
2023-03-17 16:47:26 (6548): Guest Log: CPUID EDX: 0x178bfbff
2023-03-17 16:47:26 (6548): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-03-17 16:47:26 (6548): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-17 16:47:26 (6548): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-17 16:47:26 (6548): Detected: Web Application Enabled (http://localhost:58240)
2023-03-17 16:47:26 (6548): Detected: Remote Desktop Enabled (localhost:58241)
2023-03-17 16:47:26 (6548): Preference change detected
2023-03-17 16:47:26 (6548): Setting CPU throttle for VM. (100%)
2023-03-17 16:47:26 (6548): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-17 16:47:28 (6548): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-17 16:47:28 (6548): Guest Log: BIOS: Booting from Hard Disk...
2023-03-17 16:47:31 (6548): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-17 16:47:31 (6548): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-17 16:47:31 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-17 16:47:41 (6548): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-17 16:47:41 (6548): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-17 16:47:56 (6548): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-17 16:47:56 (6548): Guest Log: 00:00:00.000161 main     Log opened 2023-03-17T16:47:53.708635000Z
2023-03-17 16:47:56 (6548): Guest Log: 00:00:00.000251 main     OS Product: Linux
2023-03-17 16:47:56 (6548): Guest Log: 00:00:00.000281 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-17 16:47:56 (6548): Guest Log: 00:00:00.000307 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-17 16:47:56 (6548): Guest Log: 00:00:00.000335 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-17 16:47:56 (6548): Guest Log: 00:00:00.000336 main     Process ID: 1249
2023-03-17 16:47:56 (6548): Guest Log: 00:00:00.000336 main     Package type: LINUX_64BITS_GENERIC
2023-03-17 16:47:56 (6548): Guest Log: 00:00:00.001393 main     5.2.32 r132073 started. Verbose level = 0
2023-03-17 16:47:56 (6548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-17 16:47:56 (6548): Guest Log: [INFO] Mounting shared directory
2023-03-17 16:47:56 (6548): Guest Log: [INFO] Checking for init_data.xml
2023-03-17 16:48:06 (6548): Guest Log: 00:00:10.012261 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 260 070 000ns (GuestNow=1 679 068 085 452 284 000 ns GuestLast=1 679 071 673 712 354 000 ns fSetTimeLastLoop=true )
2023-03-17 16:49:05 (6548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-17 16:49:05 (6548): Guest Log: [INFO] Detected branch: dev
2023-03-17 16:49:06 (6548): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-17 16:49:06 (6548): Guest Log: Copying input files
2023-03-17 16:49:11 (6548): Guest Log: Copied input files into RunAtlas.
2023-03-17 16:49:11 (6548): Guest Log: Detected user-configured HTTP proxy at http://10.116.178.201:3128 - will set in /etc/cvmfs/default.local
2023-03-17 16:49:20 (6548): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-17 16:49:20 (6548): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-17 16:49:20 (6548): Guest Log: 2.6.3.0 1563 0 31672 116859 4 1 3116422 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
2023-03-17 16:49:22 (6548): Guest Log: copied the webapp to /var/www
2023-03-17 16:49:22 (6548): Guest Log: ATHENA_PROC_NUMBER=5
2023-03-17 16:49:22 (6548): Guest Log: ATHENA_CORE_NUMBER=5
2023-03-17 16:49:23 (6548): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-17 16:49:23 (6548): Guest Log:  *** Starting ATLAS job. (PandaID=5785277700 taskID=32777692) ***
2023-03-17 18:27:33 (6548): Status Report: Elapsed Time: '6000.000000'
2023-03-17 18:27:33 (6548): Status Report: CPU Time: '19964.656250'
2023-03-17 20:07:40 (6548): Status Report: Elapsed Time: '12000.000000'
2023-03-17 20:07:40 (6548): Status Report: CPU Time: '49945.781250'
2023-03-17 21:47:49 (6548): Status Report: Elapsed Time: '18000.000000'
2023-03-17 21:47:49 (6548): Status Report: CPU Time: '79928.062500'
2023-03-17 23:06:12 (6548): Guest Log:  *** Job finished ***
2023-03-17 23:06:12 (6548): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:05:53,168 | INFO     | [job] queue monitor thread has finished
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:05:54,822 | INFO     | [data] queue_monitor thread has finished
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:05:58,333 | WARNING  | no jobs in monitored_payloads queue (waited for 62 s)
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:05:58,334 | INFO     | [job] job monitor thread has finished
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,101 | INFO     | job.realtimelogging is not enabled
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,101 | INFO     | [payload] run_realtimelog thread has finished
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,361 | INFO     | end of generic workflow (traces error code: 0)
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,373 | INFO     | traces error code: 0
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,373 | INFO     | pilot has finished
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,683 [wrapper] ==== pilot stdout END ====
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,692 [wrapper] ==== wrapper stdout RESUME ====
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,699 [wrapper] pilotpid: 5367
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:01,706 [wrapper] Pilot exit status: 0
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:02,453 [wrapper] pandaids: 5785277700
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:02,481 [wrapper] apfmon messages muted
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:02,488 [wrapper] Test setup, not cleaning
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:02,498 [wrapper] ==== wrapper stdout END ====
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:02,506 [wrapper] ==== wrapper stderr END ====
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:02,523 [wrapper] wrapperexiting ec=0, duration=22597
2023-03-17 23:06:12 (6548): Guest Log: 2023-03-17 22:06:02,530 [wrapper] apfmon messages muted
2023-03-17 23:06:12 (6548): Guest Log:  *** Error codes and diagnostics ***
2023-03-17 23:06:13 (6548): Guest Log:     "exeErrorCode": 0,
2023-03-17 23:06:13 (6548): Guest Log:     "exeErrorDiag": "",
2023-03-17 23:06:13 (6548): Guest Log:     "pilotErrorCode": 0,
2023-03-17 23:06:13 (6548): Guest Log:     "pilotErrorDiag": "",
2023-03-17 23:06:13 (6548): Guest Log:  *** Listing of results directory ***
2023-03-17 23:06:13 (6548): Guest Log: total 307136
2023-03-17 23:06:13 (6548): Guest Log: -rw-r--r--. 1 atlas atlas      4336 Mar 16 08:29 queuedata.json
2023-03-17 23:06:13 (6548): Guest Log: -rw-r--r--. 1 atlas atlas    386707 Mar 16 08:29 pilot3.tar.gz
2023-03-17 23:06:13 (6548): Guest Log: -rwx------. 1 atlas atlas     26447 Mar 16 08:29 runpilot2-wrapper.sh
2023-03-17 23:06:13 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas      8809 Mar 17 15:49 init_data.xml
2023-03-17 23:06:13 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas    398318 Mar 17 15:49 input.tar.gz
2023-03-17 23:06:13 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas     17076 Mar 17 15:49 start_atlas.sh
2023-03-17 23:06:13 (6548): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 17 15:49 EVNT.29838250._000007.pool.root.1 -> /data/./ATLAS.root_0
2023-03-17 23:06:13 (6548): Guest Log: -rw-r--r--. 1 atlas atlas      2465 Mar 17 15:49 pandaJob.out
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas       449 Mar 17 15:49 setup.sh.local
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas    979640 Mar 17 15:49 agis_schedconf.cvmfs.json
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas   1426578 Mar 17 15:50 cric_ddmendpoints.json
2023-03-17 23:06:13 (6548): Guest Log: drwx------. 4 atlas atlas       245 Mar 17 15:51 pilot3
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas 308942987 Mar 17 21:55 HITS.32777692._000140.pool.root.1
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas      1034 Mar 17 21:58 memory_monitor_summary.json
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas    350446 Mar 17 22:02 log.32777692._000140.job.log.tgz.1
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas      7615 Mar 17 22:05 heartbeat.json
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas      3018 Mar 17 22:06 pilotlog.txt
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas    759816 Mar 17 22:06 log.32777692._000140.job.log.1
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas       345 Mar 17 22:06 output.list
2023-03-17 23:06:13 (6548): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 17 22:06 runtime_log
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas   1126400 Mar 17 22:06 result.tar.gz
2023-03-17 23:06:13 (6548): Guest Log: -rw-r--r--. 1 atlas atlas     10239 Mar 17 22:06 runtime_log.err
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas       642 Mar 17 22:06 ekTNDmpAyw2n7Olcko1bjSoqABFKDmABFKDm7AsVDmzRGKDmzFOzPo.diag
2023-03-17 23:06:13 (6548): Guest Log: Looking for outputfile HITS.32777692._000140.pool.root.1
2023-03-17 23:06:13 (6548): Guest Log: HITS file was successfully produced
2023-03-17 23:06:13 (6548): Guest Log: -rw-------. 1 atlas atlas 308942987 Mar 17 21:55 /home/atlas/RunAtlas/HITS.32777692._000140.pool.root.1
2023-03-17 23:06:14 (6548): Guest Log: Successfully finished the ATLAS job!
2023-03-17 23:06:14 (6548): Guest Log: Copying the results back to the shared directory!
2023-03-17 23:06:14 (6548): Guest Log:  *** Contents of shared directory: ***
2023-03-17 23:06:14 (6548): Guest Log: total 725768
2023-03-17 23:06:14 (6548): Guest Log: -rwxrwxrwx. 1 root root 432679957 Mar 17 15:47 ATLAS.root_0
2023-03-17 23:06:14 (6548): Guest Log: -rwxrwxrwx. 1 root root 308942987 Mar 17 21:55 HITS.pool.root.1
2023-03-17 23:06:14 (6548): Guest Log: -rwxrwxrwx. 1 root root      8809 Mar 17 15:47 init_data.xml
2023-03-17 23:06:14 (6548): Guest Log: -rwxrwxrwx. 1 root root    398318 Mar 16 20:09 input.tar.gz
2023-03-17 23:06:14 (6548): Guest Log: -rwxrwxrwx. 1 root root   1126400 Mar 17  2023 result.tar.gz
2023-03-17 23:06:14 (6548): Guest Log: -rwxrwxrwx. 1 root root     17076 Mar 16 20:09 start_atlas.sh
2023-03-17 23:06:14 (6548): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-17 23:06:14 (6548): VM Completion File Detected.
2023-03-17 23:06:14 (6548): Powering off VM.
2023-03-17 23:06:15 (6548): Successfully stopped VM.
2023-03-17 23:06:15 (6548): Deregistering VM. (boinc_344e3d2755768b9f, slot#1)
2023-03-17 23:06:15 (6548): Removing network bandwidth throttle group from VM.
2023-03-17 23:06:16 (6548): Removing VM from VirtualBox.
23:06:21 (6548): called boinc_finish(0)

</stderr_txt>
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