Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-21 18:27:39 (12328): Detected: vboxwrapper 26206
2023-03-21 18:27:39 (12328): Detected: BOINC client v7.16.20
2023-03-21 18:27:40 (12328): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2023-03-21 18:27:41 (12328): Successfully copied 'init_data.xml' to the shared directory.
2023-03-21 18:27:41 (12328): Create VM. (boinc_e340f9f9a956154f, slot#8)
2023-03-21 18:27:42 (12328): Setting Memory Size for VM. (2241MB)
2023-03-21 18:27:43 (12328): Setting CPU Count for VM. (8)
2023-03-21 18:27:43 (12328): Setting Chipset Options for VM.
2023-03-21 18:27:44 (12328): Setting Graphics Controller Options for VM.
2023-03-21 18:27:44 (12328): Setting Boot Options for VM.
2023-03-21 18:27:44 (12328): Setting Network Configuration for NAT.
2023-03-21 18:27:45 (12328): Enabling VM Network Access.
2023-03-21 18:27:45 (12328): Disabling USB Support for VM.
2023-03-21 18:27:45 (12328): Disabling COM Port Support for VM.
2023-03-21 18:27:46 (12328): Disabling LPT Port Support for VM.
2023-03-21 18:27:46 (12328): Disabling Audio Support for VM.
2023-03-21 18:27:46 (12328): Disabling Clipboard Support for VM.
2023-03-21 18:27:46 (12328): Disabling Drag and Drop Support for VM.
2023-03-21 18:27:47 (12328): Adding storage controller(s) to VM.
2023-03-21 18:27:47 (12328): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-21 18:27:48 (12328): Adding VirtualBox Guest Additions to VM.
2023-03-21 18:27:48 (12328): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-21 18:27:49 (12328): forwarding host port 61906 to guest port 80
2023-03-21 18:27:49 (12328): Enabling remote desktop for VM.
2023-03-21 18:27:49 (12328): Required extension pack not installed, remote desktop not enabled.
2023-03-21 18:27:49 (12328): Enabling shared directory for VM.
2023-03-21 18:27:50 (12328): Starting VM using VBoxManage interface. (boinc_e340f9f9a956154f, slot#8)
2023-03-21 18:27:54 (12328): Successfully started VM. (PID = '7116')
2023-03-21 18:27:54 (12328): Reporting VM Process ID to BOINC.
2023-03-21 18:27:54 (12328): Guest Log: BIOS: VirtualBox 6.0.14
2023-03-21 18:27:54 (12328): Guest Log: CPUID EDX: 0x178bfbff
2023-03-21 18:27:54 (12328): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-21 18:27:54 (12328): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-21 18:27:54 (12328): Detected: Web Application Enabled (http://localhost:61906)
2023-03-21 18:27:54 (12328): Preference change detected
2023-03-21 18:27:54 (12328): Setting CPU throttle for VM. (90%)
2023-03-21 18:27:54 (12328): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-21 18:27:56 (12328): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-21 18:27:56 (12328): Guest Log: BIOS: Booting from Hard Disk...
2023-03-21 18:28:00 (12328): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-21 18:28:00 (12328): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-21 18:28:00 (12328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-21 18:28:12 (12328): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-21 18:28:12 (12328): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-21 18:28:29 (12328): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-21 18:28:29 (12328): Guest Log: 00:00:00.000376 main     Log opened 2023-03-21T18:28:27.149869000Z
2023-03-21 18:28:29 (12328): Guest Log: 00:00:00.000677 main     OS Product: Linux
2023-03-21 18:28:29 (12328): Guest Log: 00:00:00.000828 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-21 18:28:29 (12328): Guest Log: 00:00:00.000937 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-21 18:28:29 (12328): Guest Log: 00:00:00.001070 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-21 18:28:29 (12328): Guest Log: 00:00:00.001073 main     Process ID: 1290
2023-03-21 18:28:29 (12328): Guest Log: 00:00:00.001076 main     Package type: LINUX_64BITS_GENERIC
2023-03-21 18:28:29 (12328): Guest Log: 00:00:00.003651 main     5.2.32 r132073 started. Verbose level = 0
2023-03-21 18:28:29 (12328): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-21 18:28:29 (12328): Guest Log: [INFO] Mounting shared directory
2023-03-21 18:28:29 (12328): Guest Log: [INFO] Checking for init_data.xml
2023-03-21 18:28:39 (12328): Guest Log: 00:00:10.009945 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 162 299 000ns (GuestNow=1 679 437 718 321 338 000 ns GuestLast=1 679 423 307 159 039 000 ns fSetTimeLastLoop=true )
2023-03-21 18:28:39 (12328): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-21 18:28:39 (12328): Guest Log: [INFO] Detected branch: dev
2023-03-21 18:28:40 (12328): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-21 18:28:40 (12328): Guest Log: Copying input files
2023-03-21 18:28:56 (12328): Guest Log: Copied input files into RunAtlas.
2023-03-21 18:28:56 (12328): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-03-21 18:28:56 (12328): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-03-21 18:28:56 (12328): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-03-21 18:28:56 (12328): Guest Log: Further information can be found at the LHC@home message board.
2023-03-21 18:29:14 (12328): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-21 18:29:15 (12328): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-21 18:29:15 (12328): Guest Log: 2.6.3.0 1573 0 30168 117020 4 1 3116365 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2023-03-21 18:29:19 (12328): Guest Log: copied the webapp to /var/www
2023-03-21 18:29:19 (12328): Guest Log: ATHENA_PROC_NUMBER=8
2023-03-21 18:29:19 (12328): Guest Log: ATHENA_CORE_NUMBER=8
2023-03-21 18:29:21 (12328): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-21 18:29:21 (12328): Guest Log:  *** Starting ATLAS job. (PandaID=5785277754 taskID=32777692) ***
2023-03-21 20:07:58 (12328): Status Report: Elapsed Time: '6000.000000'
2023-03-21 20:07:58 (12328): Status Report: CPU Time: '524.218750'
2023-03-21 21:48:06 (12328): Status Report: Elapsed Time: '12000.000000'
2023-03-21 21:48:06 (12328): Status Report: CPU Time: '22506.812500'
2023-03-21 23:28:32 (12328): Status Report: Elapsed Time: '18000.178127'
2023-03-21 23:28:32 (12328): Status Report: CPU Time: '63885.906250'
2023-03-22 01:08:41 (12328): Status Report: Elapsed Time: '24000.178127'
2023-03-22 01:08:41 (12328): Status Report: CPU Time: '105517.093750'
2023-03-22 02:48:48 (12328): Status Report: Elapsed Time: '30000.178127'
2023-03-22 02:48:48 (12328): Status Report: CPU Time: '147572.531250'
2023-03-22 04:28:56 (12328): Status Report: Elapsed Time: '36000.178127'
2023-03-22 04:28:56 (12328): Status Report: CPU Time: '189653.859375'
2023-03-22 04:58:53 (12328): Guest Log:  *** Job finished ***
2023-03-22 04:58:53 (12328): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:29,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:32,168 | INFO     | [data] queue_monitor thread has finished
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:36,617 | INFO     | job.realtimelogging is not enabled
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:36,617 | INFO     | [payload] run_realtimelog thread has finished
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,093 | WARNING  | no jobs in monitored_payloads queue (waited for 62 s)
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,094 | INFO     | [job] job monitor thread has finished
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,510 | INFO     | end of generic workflow (traces error code: 0)
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,520 | INFO     | traces error code: 0
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,521 | INFO     | pilot has finished
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,851 [wrapper] ==== pilot stdout END ====
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,860 [wrapper] ==== wrapper stdout RESUME ====
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,868 [wrapper] pilotpid: 5440
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:49,876 [wrapper] Pilot exit status: 0
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:51,606 [wrapper] pandaids: 5785277754
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:51,653 [wrapper] apfmon messages muted
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:51,661 [wrapper] Test setup, not cleaning
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:51,671 [wrapper] ==== wrapper stdout END ====
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:51,679 [wrapper] ==== wrapper stderr END ====
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:51,695 [wrapper] wrapperexiting ec=0, duration=37765
2023-03-22 04:58:53 (12328): Guest Log: 2023-03-22 08:58:51,704 [wrapper] apfmon messages muted
2023-03-22 04:58:53 (12328): Guest Log:  *** Error codes and diagnostics ***
2023-03-22 04:58:53 (12328): Guest Log:     "exeErrorCode": 0,
2023-03-22 04:58:53 (12328): Guest Log:     "exeErrorDiag": "",
2023-03-22 04:58:53 (12328): Guest Log:     "pilotErrorCode": 0,
2023-03-22 04:58:53 (12328): Guest Log:     "pilotErrorDiag": "",
2023-03-22 04:58:53 (12328): Guest Log:  *** Listing of results directory ***
2023-03-22 04:58:53 (12328): Guest Log: total 307304
2023-03-22 04:58:53 (12328): Guest Log: -rw-r--r--. 1 atlas atlas    386707 Mar 16 08:29 pilot3.tar.gz
2023-03-22 04:58:53 (12328): Guest Log: -rw-r--r--. 1 atlas atlas      4336 Mar 16 08:32 queuedata.json
2023-03-22 04:58:53 (12328): Guest Log: -rwx------. 1 atlas atlas     26447 Mar 16 08:33 runpilot2-wrapper.sh
2023-03-22 04:58:53 (12328): Guest Log: -rwxr-xr-x. 1 atlas atlas      7964 Mar 21 22:28 init_data.xml
2023-03-22 04:58:53 (12328): Guest Log: -rwxr-xr-x. 1 atlas atlas    398327 Mar 21 22:28 input.tar.gz
2023-03-22 04:58:53 (12328): Guest Log: -rwxr-xr-x. 1 atlas atlas     17076 Mar 21 22:28 start_atlas.sh
2023-03-22 04:58:53 (12328): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 21 22:28 EVNT.29838250._000009.pool.root.1 -> /data/./ATLAS.root_0
2023-03-22 04:58:53 (12328): Guest Log: -rw-r--r--. 1 atlas atlas      2465 Mar 21 22:29 pandaJob.out
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas       412 Mar 21 22:29 setup.sh.local
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas   1426500 Mar 21 22:33 cric_ddmendpoints.json
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas    983299 Mar 21 22:34 agis_schedconf.cvmfs.json
2023-03-22 04:58:53 (12328): Guest Log: drwx------. 4 atlas atlas       245 Mar 21 22:35 pilot3
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas 308252461 Mar 22 08:45 HITS.32777692._000166.pool.root.1
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas      1039 Mar 22 08:52 memory_monitor_summary.json
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas    438225 Mar 22 08:55 log.32777692._000166.job.log.tgz.1
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas      7647 Mar 22 08:58 heartbeat.json
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas      2926 Mar 22 08:58 pilotlog.txt
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas   1102460 Mar 22 08:58 log.32777692._000166.job.log.1
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas       345 Mar 22 08:58 output.list
2023-03-22 04:58:53 (12328): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 22 08:58 runtime_log
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas   1556480 Mar 22 08:58 result.tar.gz
2023-03-22 04:58:53 (12328): Guest Log: -rw-r--r--. 1 atlas atlas      9950 Mar 22 08:58 runtime_log.err
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas       646 Mar 22 08:58 dXONDm1Dyw2n7Olcko1bjSoqABFKDmABFKDm7AsVDmeSGKDmQCtcYn.diag
2023-03-22 04:58:53 (12328): Guest Log: Looking for outputfile HITS.32777692._000166.pool.root.1
2023-03-22 04:58:53 (12328): Guest Log: HITS file was successfully produced
2023-03-22 04:58:53 (12328): Guest Log: -rw-------. 1 atlas atlas 308252461 Mar 22 08:45 /home/atlas/RunAtlas/HITS.32777692._000166.pool.root.1
2023-03-22 04:58:55 (12328): Guest Log: Successfully finished the ATLAS job!
2023-03-22 04:58:55 (12328): Guest Log: Copying the results back to the shared directory!
2023-03-22 04:58:55 (12328): Guest Log:  *** Contents of shared directory: ***
2023-03-22 04:58:55 (12328): Guest Log: total 729624
2023-03-22 04:58:55 (12328): Guest Log: -rwxrwxrwx. 1 root root 436892662 Mar 21 22:27 ATLAS.root_0
2023-03-22 04:58:55 (12328): Guest Log: -rwxrwxrwx. 1 root root 308252461 Mar 22 08:45 HITS.pool.root.1
2023-03-22 04:58:55 (12328): Guest Log: -rwxrwxrwx. 1 root root      7964 Mar 21 22:27 init_data.xml
2023-03-22 04:58:55 (12328): Guest Log: -rwxrwxrwx. 1 root root    398327 Mar 17 00:55 input.tar.gz
2023-03-22 04:58:55 (12328): Guest Log: -rwxrwxrwx. 1 root root   1556480 Mar 22 08:58 result.tar.gz
2023-03-22 04:58:55 (12328): Guest Log: -rwxrwxrwx. 1 root root     17076 Mar 17 00:55 start_atlas.sh
2023-03-22 04:58:55 (12328): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-22 04:58:55 (12328): VM Completion File Detected.
2023-03-22 04:58:55 (12328): Powering off VM.
2023-03-22 04:58:57 (12328): Successfully stopped VM.
2023-03-22 04:58:57 (12328): Deregistering VM. (boinc_e340f9f9a956154f, slot#8)
2023-03-22 04:58:57 (12328): Removing network bandwidth throttle group from VM.
2023-03-22 04:58:57 (12328): Removing VM from VirtualBox.
04:59:02 (12328): called boinc_finish(0)

</stderr_txt>
]]>

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