Stderr output

<core_client_version>7.16.16</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-17 06:43:42 (451118): Detected: vboxwrapper 26206
2023-03-17 06:43:42 (451118): Detected: BOINC client v7.16.16
2023-03-17 06:43:42 (451118): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2023-03-17 06:43:43 (451118): Successfully copied 'init_data.xml' to the shared directory.
2023-03-17 06:43:43 (451118): Create VM. (boinc_94ebfcfbee000537, slot#19)
2023-03-17 06:43:43 (451118): Setting Memory Size for VM. (2241MB)
2023-03-17 06:43:43 (451118): Setting CPU Count for VM. (1)
2023-03-17 06:43:43 (451118): Setting Chipset Options for VM.
2023-03-17 06:43:43 (451118): Setting Graphics Controller Options for VM.
2023-03-17 06:43:43 (451118): Setting Boot Options for VM.
2023-03-17 06:43:43 (451118): Setting Network Configuration for NAT.
2023-03-17 06:43:43 (451118): Enabling VM Network Access.
2023-03-17 06:43:43 (451118): Disabling USB Support for VM.
2023-03-17 06:43:43 (451118): Disabling COM Port Support for VM.
2023-03-17 06:43:43 (451118): Disabling LPT Port Support for VM.
2023-03-17 06:43:43 (451118): Disabling Audio Support for VM.
2023-03-17 06:43:44 (451118): Disabling Clipboard Support for VM.
2023-03-17 06:43:44 (451118): Disabling Drag and Drop Support for VM.
2023-03-17 06:43:44 (451118): Adding storage controller(s) to VM.
2023-03-17 06:43:44 (451118): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-17 06:43:44 (451118): Adding VirtualBox Guest Additions to VM.
2023-03-17 06:43:44 (451118): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-17 06:43:44 (451118): forwarding host port 37391 to guest port 80
2023-03-17 06:43:44 (451118): Enabling remote desktop for VM.
2023-03-17 06:43:44 (451118): Enabling shared directory for VM.
2023-03-17 06:43:44 (451118): Starting VM using VBoxManage interface. (boinc_94ebfcfbee000537, slot#19)
2023-03-17 06:43:45 (451118): Successfully started VM. (PID = '451519')
2023-03-17 06:43:45 (451118): Reporting VM Process ID to BOINC.
2023-03-17 06:43:45 (451118): Guest Log: BIOS: VirtualBox 6.1.40
2023-03-17 06:43:45 (451118): Guest Log: CPUID EDX: 0x178bfbff
2023-03-17 06:43:45 (451118): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-03-17 06:43:45 (451118): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-17 06:43:45 (451118): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-17 06:43:45 (451118): Detected: Web Application Enabled (http://localhost:37391)
2023-03-17 06:43:45 (451118): Detected: Remote Desktop Enabled (localhost:55717)
2023-03-17 06:43:45 (451118): Preference change detected
2023-03-17 06:43:45 (451118): Setting CPU throttle for VM. (100%)
2023-03-17 06:43:45 (451118): Setting network throttle for VM. (500KB)
2023-03-17 06:43:45 (451118): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-17 06:43:47 (451118): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-17 06:43:47 (451118): Guest Log: BIOS: Booting from Hard Disk...
2023-03-17 06:43:50 (451118): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-17 06:43:50 (451118): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-17 06:43:50 (451118): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-17 06:43:54 (451118): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-17 06:43:54 (451118): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-17 06:44:05 (451118): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-17 06:44:05 (451118): Guest Log: 00:00:00.000279 main     Log opened 2023-03-17T05:44:02.767714000Z
2023-03-17 06:44:05 (451118): Guest Log: 00:00:00.000437 main     OS Product: Linux
2023-03-17 06:44:05 (451118): Guest Log: 00:00:00.000460 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-17 06:44:05 (451118): Guest Log: 00:00:00.000479 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-17 06:44:05 (451118): Guest Log: 00:00:00.000497 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-17 06:44:05 (451118): Guest Log: 00:00:00.000498 main     Process ID: 1206
2023-03-17 06:44:05 (451118): Guest Log: 00:00:00.000498 main     Package type: LINUX_64BITS_GENERIC
2023-03-17 06:44:05 (451118): Guest Log: 00:00:00.002026 main     5.2.32 r132073 started. Verbose level = 0
2023-03-17 06:44:05 (451118): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-17 06:44:05 (451118): Guest Log: [INFO] Mounting shared directory
2023-03-17 06:44:05 (451118): Guest Log: [INFO] Checking for init_data.xml
2023-03-17 06:44:08 (451118): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-17 06:44:08 (451118): Guest Log: [INFO] Detected branch: dev
2023-03-17 06:44:09 (451118): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-17 06:44:09 (451118): Guest Log: Copying input files
2023-03-17 06:44:12 (451118): Guest Log: Copied input files into RunAtlas.
2023-03-17 06:44:12 (451118): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-03-17 06:44:12 (451118): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-03-17 06:44:12 (451118): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-03-17 06:44:12 (451118): Guest Log: Further information can be found at the LHC@home message board.
2023-03-17 06:44:20 (451118): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-17 06:44:21 (451118): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-17 06:44:21 (451118): Guest Log: 2.6.3.0 1475 0 30088 116840 3 1 3116422 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2023-03-17 06:44:21 (451118): Guest Log: copied the webapp to /var/www
2023-03-17 06:44:21 (451118): Guest Log: core_number=1
2023-03-17 06:44:22 (451118): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-17 06:44:22 (451118): Guest Log:  *** Starting ATLAS job. (PandaID=5785058972 taskID=32777692) ***
2023-03-17 07:45:11 (451118): VM state change detected. (old = 'running', new = 'paused')
2023-03-17 07:48:19 (451118): VM state change detected. (old = 'paused', new = 'running')
2023-03-17 07:50:17 (451118): Preference change detected
2023-03-17 07:50:17 (451118): Setting CPU throttle for VM. (100%)
2023-03-17 07:50:17 (451118): Setting network throttle for VM. (500KB)
2023-03-17 07:50:18 (451118): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-17 07:50:32 (451118): Preference change detected
2023-03-17 07:50:32 (451118): Setting CPU throttle for VM. (100%)
2023-03-17 07:50:32 (451118): Setting network throttle for VM. (500KB)
2023-03-17 07:50:32 (451118): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-17 08:25:54 (451118): Status Report: Elapsed Time: '6000.000000'
2023-03-17 08:25:54 (451118): Status Report: CPU Time: '4075.350000'
2023-03-17 10:04:55 (451118): Status Report: Elapsed Time: '12000.000000'
2023-03-17 10:04:55 (451118): Status Report: CPU Time: '10005.970000'
2023-03-17 11:43:56 (451118): Status Report: Elapsed Time: '18000.000000'
2023-03-17 11:43:56 (451118): Status Report: CPU Time: '15938.860000'
2023-03-17 13:22:58 (451118): Status Report: Elapsed Time: '24000.000000'
2023-03-17 13:22:58 (451118): Status Report: CPU Time: '21872.230000'
2023-03-17 15:02:00 (451118): Status Report: Elapsed Time: '30000.000000'
2023-03-17 15:02:00 (451118): Status Report: CPU Time: '27791.780000'
2023-03-17 16:41:01 (451118): Status Report: Elapsed Time: '36000.000000'
2023-03-17 16:41:01 (451118): Status Report: CPU Time: '33725.660000'
2023-03-17 18:20:02 (451118): Status Report: Elapsed Time: '42000.000000'
2023-03-17 18:20:02 (451118): Status Report: CPU Time: '39659.070000'
2023-03-17 19:59:02 (451118): Status Report: Elapsed Time: '48000.000000'
2023-03-17 19:59:02 (451118): Status Report: CPU Time: '45592.240000'
2023-03-17 21:38:02 (451118): Status Report: Elapsed Time: '54000.000000'
2023-03-17 21:38:02 (451118): Status Report: CPU Time: '51525.730000'
2023-03-17 23:17:03 (451118): Status Report: Elapsed Time: '60000.000000'
2023-03-17 23:17:03 (451118): Status Report: CPU Time: '57459.320000'
2023-03-18 00:03:26 (451118): Guest Log:  *** Job finished ***
2023-03-18 00:03:26 (451118): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:17,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:20,372 | INFO     | [data] queue_monitor thread has finished
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:27,626 | INFO     | job.realtimelogging is not enabled
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:27,627 | INFO     | [payload] run_realtimelog thread has finished
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:45,502 | WARNING  | no jobs in monitored_payloads queue (waited for 62 s)
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:45,502 | INFO     | [job] job monitor thread has finished
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,357 | INFO     | end of generic workflow (traces error code: 0)
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,364 | INFO     | traces error code: 0
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,364 | INFO     | pilot has finished
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,530 [wrapper] ==== pilot stdout END ====
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,536 [wrapper] ==== wrapper stdout RESUME ====
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,542 [wrapper] pilotpid: 5229
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,548 [wrapper] Pilot exit status: 0
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,894 [wrapper] pandaids: 5785058972
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,907 [wrapper] apfmon messages muted
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,913 [wrapper] Test setup, not cleaning
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,919 [wrapper] ==== wrapper stdout END ====
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,924 [wrapper] ==== wrapper stderr END ====
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,936 [wrapper] wrapperexiting ec=0, duration=62186
2023-03-18 00:03:26 (451118): Guest Log: 2023-03-17 23:00:46,941 [wrapper] apfmon messages muted
2023-03-18 00:03:26 (451118): Guest Log:  *** Error codes and diagnostics ***
2023-03-18 00:03:26 (451118): Guest Log:     "exeErrorCode": 0,
2023-03-18 00:03:26 (451118): Guest Log:     "exeErrorDiag": "",
2023-03-18 00:03:26 (451118): Guest Log:     "pilotErrorCode": 0,
2023-03-18 00:03:26 (451118): Guest Log:     "pilotErrorDiag": "",
2023-03-18 00:03:26 (451118): Guest Log:  *** Listing of results directory ***
2023-03-18 00:03:26 (451118): Guest Log: total 305444
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 atlas atlas    386707 Mar 16 02:23 pilot3.tar.gz
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 atlas atlas      4336 Mar 16 03:05 queuedata.json
2023-03-18 00:03:26 (451118): Guest Log: -rwx------. 1 atlas atlas     26447 Mar 16 03:09 runpilot2-wrapper.sh
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 atlas atlas    398321 Mar 17 05:44 input.tar.gz
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 atlas atlas      9588 Mar 17 05:44 init_data.xml
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 atlas atlas     17076 Mar 17 05:44 start_atlas.sh
2023-03-18 00:03:26 (451118): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 17 05:44 EVNT.29838250._000004.pool.root.1 -> /data/./ATLAS.root_0
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 atlas atlas      2463 Mar 17 05:44 pandaJob.out
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas       412 Mar 17 05:44 setup.sh.local
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas    975582 Mar 17 05:44 agis_schedconf.cvmfs.json
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas   1426563 Mar 17 05:45 cric_ddmendpoints.json
2023-03-18 00:03:26 (451118): Guest Log: drwx------. 4 atlas atlas       245 Mar 17 05:46 pilot3
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas 304078367 Mar 17 22:52 HITS.32777692._000076.pool.root.1
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas      1032 Mar 17 22:52 memory_monitor_summary.json
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas    460671 Mar 17 22:56 log.32777692._000076.job.log.tgz.1
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas      7612 Mar 17 23:00 heartbeat.json
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas      2926 Mar 17 23:00 pilotlog.txt
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas   2212578 Mar 17 23:00 log.32777692._000076.job.log.1
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas       345 Mar 17 23:00 output.list
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 17 23:00 runtime_log
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas   2693120 Mar 17 23:00 result.tar.gz
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 atlas atlas      9823 Mar 17 23:00 runtime_log.err
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas       642 Mar 17 23:00 plHLDmKAtw2n7Olcko1bjSoqABFKDmABFKDm7AsVDmDRGKDmbKBSTo.diag
2023-03-18 00:03:26 (451118): Guest Log: Looking for outputfile HITS.32777692._000076.pool.root.1
2023-03-18 00:03:26 (451118): Guest Log: HITS file was successfully produced
2023-03-18 00:03:26 (451118): Guest Log: -rw-------. 1 atlas atlas 304078367 Mar 17 22:52 /home/atlas/RunAtlas/HITS.32777692._000076.pool.root.1
2023-03-18 00:03:26 (451118): Guest Log: Successfully finished the ATLAS job!
2023-03-18 00:03:26 (451118): Guest Log: Copying the results back to the shared directory!
2023-03-18 00:03:26 (451118): Guest Log:  *** Contents of shared directory: ***
2023-03-18 00:03:26 (451118): Guest Log: total 430672
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 root root 437872866 Mar 17 05:43 ATLAS.root_0
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 root root      9588 Mar 17 05:43 init_data.xml
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 root root    398321 Mar 17 05:43 input.tar.gz
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 root root   2693120 Mar 17  2023 result.tar.gz
2023-03-18 00:03:26 (451118): Guest Log: -rw-r--r--. 1 root root     17076 Mar 17 05:43 start_atlas.sh
2023-03-18 00:03:26 (451118): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-18 00:03:26 (451118): VM Completion File Detected.
2023-03-18 00:03:26 (451118): Powering off VM.
2023-03-18 00:03:27 (451118): Successfully stopped VM.
2023-03-18 00:03:27 (451118): Deregistering VM. (boinc_94ebfcfbee000537, slot#19)
2023-03-18 00:03:27 (451118): Removing network bandwidth throttle group from VM.
2023-03-18 00:03:27 (451118): Removing VM from VirtualBox.
00:03:32 (451118): called boinc_finish(0)

</stderr_txt>
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