Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-20 18:22:07 (13220): Detected: vboxwrapper 26206
2023-03-20 18:22:07 (13220): Detected: BOINC client v7.20.2
2023-03-20 18:22:08 (13220): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2023-03-20 18:22:08 (13220): Successfully copied 'init_data.xml' to the shared directory.
2023-03-20 18:22:09 (13220): Create VM. (boinc_83e5b50e116f0876, slot#2)
2023-03-20 18:22:10 (13220): Setting Memory Size for VM. (4800MB)
2023-03-20 18:22:10 (13220): Setting CPU Count for VM. (2)
2023-03-20 18:22:11 (13220): Setting Chipset Options for VM.
2023-03-20 18:22:11 (13220): Setting Graphics Controller Options for VM.
2023-03-20 18:22:11 (13220): Setting Boot Options for VM.
2023-03-20 18:22:12 (13220): Setting Network Configuration for NAT.
2023-03-20 18:22:12 (13220): Enabling VM Network Access.
2023-03-20 18:22:12 (13220): Disabling USB Support for VM.
2023-03-20 18:22:12 (13220): Disabling COM Port Support for VM.
2023-03-20 18:22:13 (13220): Disabling LPT Port Support for VM.
2023-03-20 18:22:13 (13220): Disabling Audio Support for VM.
2023-03-20 18:22:14 (13220): Disabling Clipboard Support for VM.
2023-03-20 18:22:14 (13220): Disabling Drag and Drop Support for VM.
2023-03-20 18:22:14 (13220): Adding storage controller(s) to VM.
2023-03-20 18:22:15 (13220): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-20 18:22:17 (13220): Adding VirtualBox Guest Additions to VM.
2023-03-20 18:22:18 (13220): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-20 18:22:18 (13220): forwarding host port 54900 to guest port 80
2023-03-20 18:22:18 (13220): Enabling remote desktop for VM.
2023-03-20 18:22:19 (13220): Enabling shared directory for VM.
2023-03-20 18:22:20 (13220): Starting VM using VBoxManage interface. (boinc_83e5b50e116f0876, slot#2)
2023-03-20 18:22:29 (13220): Successfully started VM. (PID = '7856')
2023-03-20 18:22:29 (13220): Reporting VM Process ID to BOINC.
2023-03-20 18:22:29 (13220): Guest Log: BIOS: VirtualBox 7.0.6
2023-03-20 18:22:29 (13220): Guest Log: CPUID EDX: 0x178bfbff
2023-03-20 18:22:29 (13220): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-03-20 18:22:29 (13220): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-20 18:22:29 (13220): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-20 18:22:29 (13220): Detected: Web Application Enabled (http://localhost:54900)
2023-03-20 18:22:29 (13220): Detected: Remote Desktop Enabled (localhost:54901)
2023-03-20 18:22:29 (13220): Preference change detected
2023-03-20 18:22:29 (13220): Setting CPU throttle for VM. (100%)
2023-03-20 18:22:30 (13220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-20 18:22:31 (13220): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-20 18:22:31 (13220): Guest Log: BIOS: Booting from Hard Disk...
2023-03-20 18:22:34 (13220): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-20 18:22:34 (13220): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-20 18:22:34 (13220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-20 18:22:42 (13220): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-20 18:22:42 (13220): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-20 18:22:56 (13220): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-20 18:22:56 (13220): Guest Log: 00:00:00.000265 main     Log opened 2023-03-20T17:22:55.191044000Z
2023-03-20 18:22:56 (13220): Guest Log: 00:00:00.000456 main     OS Product: Linux
2023-03-20 18:22:56 (13220): Guest Log: 00:00:00.000517 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-20 18:22:56 (13220): Guest Log: 00:00:00.000559 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-20 18:22:56 (13220): Guest Log: 00:00:00.000601 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-20 18:22:56 (13220): Guest Log: 00:00:00.000603 main     Process ID: 1284
2023-03-20 18:22:56 (13220): Guest Log: 00:00:00.000604 main     Package type: LINUX_64BITS_GENERIC
2023-03-20 18:22:56 (13220): Guest Log: 00:00:00.001867 main     5.2.32 r132073 started. Verbose level = 0
2023-03-20 18:22:57 (13220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-20 18:22:57 (13220): Guest Log: [INFO] Mounting shared directory
2023-03-20 18:22:57 (13220): Guest Log: [INFO] Checking for init_data.xml
2023-03-20 18:23:04 (13220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-20 18:23:04 (13220): Guest Log: [INFO] Detected branch: dev
2023-03-20 18:23:06 (13220): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-20 18:23:06 (13220): Guest Log: Copying input files
2023-03-20 18:23:20 (13220): Guest Log: Copied input files into RunAtlas.
2023-03-20 18:23:20 (13220): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-03-20 18:23:20 (13220): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-03-20 18:23:20 (13220): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-03-20 18:23:20 (13220): Guest Log: Further information can be found at the LHC@home message board.
2023-03-20 18:23:35 (13220): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-20 18:23:35 (13220): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-20 18:23:35 (13220): Guest Log: 2.6.3.0 1577 0 30144 116972 4 1 3116360 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2023-03-20 18:23:38 (13220): Guest Log: copied the webapp to /var/www
2023-03-20 18:23:38 (13220): Guest Log: ATHENA_PROC_NUMBER=2
2023-03-20 18:23:38 (13220): Guest Log: ATHENA_CORE_NUMBER=2
2023-03-20 18:23:38 (13220): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-20 18:23:38 (13220): Guest Log:  *** Starting ATLAS job. (PandaID=5753961892 taskID=32413688) ***
2023-03-20 20:18:58 (13220): Status Report: Elapsed Time: '6000.839857'
2023-03-20 20:18:58 (13220): Status Report: CPU Time: '10910.453125'
2023-03-20 20:47:53 (13220): Guest Log:  *** Job finished ***
2023-03-20 20:47:53 (13220): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:16,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:19,887 | INFO     | [data] queue_monitor thread has finished
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:26,221 | INFO     | job.realtimelogging is not enabled
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:26,221 | INFO     | [payload] run_realtimelog thread has finished
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:51,234 | WARNING  | no jobs in monitored_payloads queue (waited for 73 s)
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:51,234 | INFO     | [job] job monitor thread has finished
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:51,893 | INFO     | end of generic workflow (traces error code: 0)
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:51,894 | INFO     | traces error code: 0
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:51,894 | INFO     | pilot has finished
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:51,989 [wrapper] ==== pilot stdout END ====
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:51,998 [wrapper] ==== wrapper stdout RESUME ====
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,007 [wrapper] pilotpid: 5386
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,015 [wrapper] Pilot exit status: 0
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,684 [wrapper] pandaids: 5753961892
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,700 [wrapper] apfmon messages muted
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,708 [wrapper] Test setup, not cleaning
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,717 [wrapper] ==== wrapper stdout END ====
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,725 [wrapper] ==== wrapper stderr END ====
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,743 [wrapper] wrapperexiting ec=0, duration=8652
2023-03-20 20:47:53 (13220): Guest Log: 2023-03-20 19:47:52,753 [wrapper] apfmon messages muted
2023-03-20 20:47:53 (13220): Guest Log:  *** Error codes and diagnostics ***
2023-03-20 20:47:53 (13220): Guest Log:     "exeErrorCode": 0,
2023-03-20 20:47:53 (13220): Guest Log:     "exeErrorDiag": "",
2023-03-20 20:47:53 (13220): Guest Log:     "pilotErrorCode": 0,
2023-03-20 20:47:53 (13220): Guest Log:     "pilotErrorDiag": "",
2023-03-20 20:47:53 (13220): Guest Log:  *** Listing of results directory ***
2023-03-20 20:47:53 (13220): Guest Log: total 33532
2023-03-20 20:47:53 (13220): Guest Log: -rw-r--r--. 1 atlas atlas   386707 Mar 20 12:27 pilot3.tar.gz
2023-03-20 20:47:53 (13220): Guest Log: -rw-r--r--. 1 atlas atlas     4336 Mar 20 13:05 queuedata.json
2023-03-20 20:47:53 (13220): Guest Log: -rwx------. 1 atlas atlas    26447 Mar 20 13:06 runpilot2-wrapper.sh
2023-03-20 20:47:53 (13220): Guest Log: -rwxr-xr-x. 1 atlas atlas     7157 Mar 20 17:23 init_data.xml
2023-03-20 20:47:53 (13220): Guest Log: -rwxr-xr-x. 1 atlas atlas   398357 Mar 20 17:23 input.tar.gz
2023-03-20 20:47:53 (13220): Guest Log: -rwxr-xr-x. 1 atlas atlas    17341 Mar 20 17:23 start_atlas.sh
2023-03-20 20:47:53 (13220): Guest Log: lrwxrwxrwx. 1 atlas atlas       20 Mar 20 17:23 EVNT.29838250._000010.pool.root.1 -> /data/./ATLAS.root_0
2023-03-20 20:47:53 (13220): Guest Log: -rw-r--r--. 1 atlas atlas     2552 Mar 20 17:23 pandaJob.out
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas      412 Mar 20 17:23 setup.sh.local
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas   978999 Mar 20 17:24 agis_schedconf.cvmfs.json
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas  1426500 Mar 20 17:24 agis_ddmendpoints.agis.ALL.json
2023-03-20 20:47:53 (13220): Guest Log: drwx------. 4 atlas atlas      245 Mar 20 17:24 pilot3
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas 29911820 Mar 20 19:46 HITS.32413688._000229-1879624-1679317579.pool.root.1
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas     1022 Mar 20 19:47 memory_monitor_summary.json
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas   200163 Mar 20 19:47 log.32413688._000229-1879624-1679317579.job.log.tgz.1
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas     7702 Mar 20 19:47 heartbeat.json
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas     2926 Mar 20 19:47 pilotlog.txt
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas   339903 Mar 20 19:47 log.32413688._000229-1879624-1679317579.job.log.1
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas      402 Mar 20 19:47 output.list
2023-03-20 20:47:53 (13220): Guest Log: -rw-r--r--. 1 atlas atlas      677 Mar 20 19:47 runtime_log
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas   563200 Mar 20 19:47 result.tar.gz
2023-03-20 20:47:53 (13220): Guest Log: -rw-r--r--. 1 atlas atlas    10720 Mar 20 19:47 runtime_log.err
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas      641 Mar 20 19:47 KFkKDmbOUy2n7Olcko1bjSoqABFKDmABFKDm7AsVDmcUGKDmsOMXDo.diag
2023-03-20 20:47:53 (13220): Guest Log: Looking for outputfile HITS.32413688._000229-1879624-1679317579.pool.root.1
2023-03-20 20:47:53 (13220): Guest Log: HITS file was successfully produced
2023-03-20 20:47:53 (13220): Guest Log: -rw-------. 1 atlas atlas 29911820 Mar 20 19:46 /home/atlas/RunAtlas/HITS.32413688._000229-1879624-1679317579.pool.root.1
2023-03-20 20:47:54 (13220): Guest Log: Successfully finished the ATLAS job!
2023-03-20 20:47:54 (13220): Guest Log: Copying the results back to the shared directory!
2023-03-20 20:47:54 (13220): Guest Log:  *** Contents of shared directory: ***
2023-03-20 20:47:54 (13220): Guest Log: total 456340
2023-03-20 20:47:54 (13220): Guest Log: -rwxrwxrwx. 1 root root 436382292 Mar 20 17:22 ATLAS.root_0
2023-03-20 20:47:54 (13220): Guest Log: -rwxrwxrwx. 1 root root  29911820 Mar 20 19:46 HITS.pool.root.1
2023-03-20 20:47:54 (13220): Guest Log: -rwxrwxrwx. 1 root root      7157 Mar 20 17:22 init_data.xml
2023-03-20 20:47:54 (13220): Guest Log: -rwxrwxrwx. 1 root root    398357 Mar 20 17:21 input.tar.gz
2023-03-20 20:47:54 (13220): Guest Log: -rwxrwxrwx. 1 root root    563200 Mar 20 19:47 result.tar.gz
2023-03-20 20:47:54 (13220): Guest Log: -rwxrwxrwx. 1 root root     17341 Mar 20 17:21 start_atlas.sh
2023-03-20 20:47:54 (13220): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-20 20:47:54 (13220): VM Completion File Detected.
2023-03-20 20:47:54 (13220): Powering off VM.
2023-03-20 20:47:56 (13220): Successfully stopped VM.
2023-03-20 20:47:56 (13220): Deregistering VM. (boinc_83e5b50e116f0876, slot#2)
2023-03-20 20:47:56 (13220): Removing network bandwidth throttle group from VM.
2023-03-20 20:47:56 (13220): Removing VM from VirtualBox.
20:48:01 (13220): called boinc_finish(0)

</stderr_txt>
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