Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-22 15:20:48 (16152): Detected: vboxwrapper 26206
2023-03-22 15:20:48 (16152): Detected: BOINC client v7.16.20
2023-03-22 15:20:49 (16152): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2023-03-22 15:20:49 (16152): Successfully copied 'init_data.xml' to the shared directory.
2023-03-22 15:20:50 (16152): Create VM. (boinc_40b7df7c3bb90bcc, slot#10)
2023-03-22 15:20:50 (16152): Setting Memory Size for VM. (4600MB)
2023-03-22 15:20:51 (16152): Setting CPU Count for VM. (6)
2023-03-22 15:20:51 (16152): Setting Chipset Options for VM.
2023-03-22 15:20:51 (16152): Setting Graphics Controller Options for VM.
2023-03-22 15:20:51 (16152): Setting Boot Options for VM.
2023-03-22 15:20:52 (16152): Setting Network Configuration for NAT.
2023-03-22 15:20:52 (16152): Enabling VM Network Access.
2023-03-22 15:20:52 (16152): Disabling USB Support for VM.
2023-03-22 15:20:53 (16152): Disabling COM Port Support for VM.
2023-03-22 15:20:53 (16152): Disabling LPT Port Support for VM.
2023-03-22 15:20:53 (16152): Disabling Audio Support for VM.
2023-03-22 15:20:53 (16152): Disabling Clipboard Support for VM.
2023-03-22 15:20:54 (16152): Disabling Drag and Drop Support for VM.
2023-03-22 15:20:54 (16152): Adding storage controller(s) to VM.
2023-03-22 15:20:54 (16152): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-22 15:20:55 (16152): Adding VirtualBox Guest Additions to VM.
2023-03-22 15:20:55 (16152): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-22 15:20:56 (16152): forwarding host port 55579 to guest port 80
2023-03-22 15:20:56 (16152): Enabling remote desktop for VM.
2023-03-22 15:20:56 (16152): Required extension pack not installed, remote desktop not enabled.
2023-03-22 15:20:56 (16152): Enabling shared directory for VM.
2023-03-22 15:20:57 (16152): Starting VM using VBoxManage interface. (boinc_40b7df7c3bb90bcc, slot#10)
2023-03-22 15:21:01 (16152): Successfully started VM. (PID = '7796')
2023-03-22 15:21:01 (16152): Reporting VM Process ID to BOINC.
2023-03-22 15:21:01 (16152): Guest Log: BIOS: VirtualBox 6.1.12
2023-03-22 15:21:01 (16152): Guest Log: CPUID EDX: 0x178bfbff
2023-03-22 15:21:01 (16152): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-03-22 15:21:01 (16152): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-22 15:21:01 (16152): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-22 15:21:01 (16152): Detected: Web Application Enabled (http://localhost:55579)
2023-03-22 15:21:01 (16152): Preference change detected
2023-03-22 15:21:01 (16152): Setting CPU throttle for VM. (100%)
2023-03-22 15:21:02 (16152): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-22 15:21:03 (16152): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-22 15:21:03 (16152): Guest Log: BIOS: Booting from Hard Disk...
2023-03-22 15:21:06 (16152): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-22 15:21:06 (16152): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-22 15:21:06 (16152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-22 15:21:17 (16152): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-22 15:21:17 (16152): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-22 15:21:27 (16152): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-22 15:21:27 (16152): Guest Log: 00:00:00.000178 main     Log opened 2023-03-22T15:21:25.670966000Z
2023-03-22 15:21:27 (16152): Guest Log: 00:00:00.000296 main     OS Product: Linux
2023-03-22 15:21:27 (16152): Guest Log: 00:00:00.000337 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-22 15:21:27 (16152): Guest Log: 00:00:00.000372 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-22 15:21:27 (16152): Guest Log: 00:00:00.000406 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-22 15:21:27 (16152): Guest Log: 00:00:00.000407 main     Process ID: 1335
2023-03-22 15:21:27 (16152): Guest Log: 00:00:00.000408 main     Package type: LINUX_64BITS_GENERIC
2023-03-22 15:21:27 (16152): Guest Log: 00:00:00.001512 main     5.2.32 r132073 started. Verbose level = 0
2023-03-22 15:21:28 (16152): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-22 15:21:28 (16152): Guest Log: [INFO] Mounting shared directory
2023-03-22 15:21:28 (16152): Guest Log: [INFO] Checking for init_data.xml
2023-03-22 15:21:31 (16152): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-22 15:21:31 (16152): Guest Log: [INFO] Detected branch: dev
2023-03-22 15:21:31 (16152): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-22 15:21:31 (16152): Guest Log: Copying input files
2023-03-22 15:21:37 (16152): Guest Log: 00:00:10.006807 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 752 078 000ns (GuestNow=1 679 494 897 921 736 000 ns GuestLast=1 679 498 485 673 814 000 ns fSetTimeLastLoop=true )
2023-03-22 15:21:38 (16152): Guest Log: Copied input files into RunAtlas.
2023-03-22 15:21:38 (16152): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-03-22 15:21:38 (16152): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-03-22 15:21:38 (16152): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-03-22 15:21:38 (16152): Guest Log: Further information can be found at the LHC@home message board.
2023-03-22 15:21:46 (16152): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-22 15:21:47 (16152): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-22 15:21:48 (16152): Guest Log: 2.6.3.0 1611 0 30148 117044 4 1 3116365 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2023-03-22 15:21:48 (16152): Guest Log: copied the webapp to /var/www
2023-03-22 15:21:48 (16152): Guest Log: ATHENA_PROC_NUMBER=6
2023-03-22 15:21:48 (16152): Guest Log: ATHENA_CORE_NUMBER=6
2023-03-22 15:21:48 (16152): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-22 15:21:48 (16152): Guest Log:  *** Starting ATLAS job. (PandaID=5753961892 taskID=32413688) ***
2023-03-22 15:57:07 (16152): VM state change detected. (old = 'running', new = 'paused')
2023-03-22 19:40:17 (16152): VM state change detected. (old = 'paused', new = 'running')
2023-03-22 19:40:19 (16152): Guest Log: 00:35:41.409344 timesync vgsvcTimeSyncWorker: Radical host time change: 13 400 154 000 000ns (HostNow=1 679 510 419 478 000 000 ns HostLast=1 679 497 019 324 000 000 ns)
2023-03-22 19:40:29 (16152): Guest Log: 00:35:51.411735 timesync vgsvcTimeSyncWorker: Radical guest time change: 13 400 156 927 000ns (GuestNow=1 679 510 429 480 648 000 ns GuestLast=1 679 497 029 323 721 000 ns fSetTimeLastLoop=true )
2023-03-22 19:44:02 (16152): Guest Log:  *** Job finished ***
2023-03-22 19:44:02 (16152): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:43:42,475 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:43:43,014 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:43:43,015 | INFO     | [job] queue monitor thread has finished
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:43:45,509 | INFO     | [data] queue_monitor thread has finished
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:00,179 | INFO     | job.realtimelogging is not enabled
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:00,179 | INFO     | [payload] run_realtimelog thread has finished
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,180 | INFO     | end of generic workflow (traces error code: 0)
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,181 | INFO     | traces error code: 0
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,181 | INFO     | pilot has finished
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,252 [wrapper] ==== pilot stdout END ====
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,258 [wrapper] ==== wrapper stdout RESUME ====
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,264 [wrapper] pilotpid: 5464
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,270 [wrapper] Pilot exit status: 0
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,601 [wrapper] pandaids: 5753961892
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,611 [wrapper] apfmon messages muted
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,616 [wrapper] Test setup, not cleaning
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,622 [wrapper] ==== wrapper stdout END ====
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,628 [wrapper] ==== wrapper stderr END ====
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,638 [wrapper] wrapperexiting ec=0, duration=15732
2023-03-22 19:44:02 (16152): Guest Log: 2023-03-22 18:44:01,644 [wrapper] apfmon messages muted
2023-03-22 19:44:02 (16152): Guest Log:  *** Error codes and diagnostics ***
2023-03-22 19:44:02 (16152): Guest Log:     "exeErrorCode": 65,
2023-03-22 19:44:02 (16152): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2023-03-22 19:44:02 (16152): Guest Log:     "pilotErrorCode": 1305,
2023-03-22 19:44:02 (16152): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-03-22 18:41:27,891 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2023-03-22 19:44:02 (16152): Guest Log:  *** Listing of results directory ***
2023-03-22 19:44:02 (16152): Guest Log: total 3596
2023-03-22 19:44:02 (16152): Guest Log: -rw-r--r--. 1 atlas atlas  386707 Mar 22 10:25 pilot3.tar.gz
2023-03-22 19:44:02 (16152): Guest Log: -rw-r--r--. 1 atlas atlas    4336 Mar 22 11:02 queuedata.json
2023-03-22 19:44:02 (16152): Guest Log: -rwx------. 1 atlas atlas   27542 Mar 22 11:04 runpilot2-wrapper.sh
2023-03-22 19:44:02 (16152): Guest Log: -rwxr-xr-x. 1 atlas atlas    8922 Mar 22 14:21 init_data.xml
2023-03-22 19:44:02 (16152): Guest Log: -rwxr-xr-x. 1 atlas atlas  398722 Mar 22 14:21 input.tar.gz
2023-03-22 19:44:02 (16152): Guest Log: -rwxr-xr-x. 1 atlas atlas   17707 Mar 22 14:21 start_atlas.sh
2023-03-22 19:44:02 (16152): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 22 14:21 EVNT.29838250._000010.pool.root.1 -> /data/./ATLAS.root_0
2023-03-22 19:44:02 (16152): Guest Log: -rw-r--r--. 1 atlas atlas    2553 Mar 22 14:21 pandaJob.out
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas     284 Mar 22 14:21 setup.sh.local
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas  982146 Mar 22 14:22 agis_schedconf.cvmfs.json
2023-03-22 19:44:02 (16152): Guest Log: drwx------. 4 atlas atlas     245 Mar 22 14:22 pilot3
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas    1000 Mar 22 18:41 memory_monitor_summary.json
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas   29358 Mar 22 18:41 log.32413688._000229-2538634-1679483068.job.log.tgz.1
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas 1426500 Mar 22 18:41 agis_ddmendpoints.agis.ALL.json
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas    8536 Mar 22 18:43 heartbeat.json
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas    3018 Mar 22 18:44 pilotlog.txt
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas  137112 Mar 22 18:44 log.32413688._000229-2538634-1679483068.job.log.1
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas     220 Mar 22 18:44 output.list
2023-03-22 19:44:02 (16152): Guest Log: -rw-r--r--. 1 atlas atlas     677 Mar 22 18:44 runtime_log
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas  184320 Mar 22 18:44 result.tar.gz
2023-03-22 19:44:02 (16152): Guest Log: -rw-r--r--. 1 atlas atlas   10944 Mar 22 18:44 runtime_log.err
2023-03-22 19:44:02 (16152): Guest Log: -rw-------. 1 atlas atlas     641 Mar 22 18:44 bSjNDmlRBz2n7Olcko1bjSoqABFKDmABFKDm7AsVDmkXGKDm3gSW9m.diag
2023-03-22 19:44:02 (16152): Guest Log: Looking for outputfile HITS.32413688._000229-2538634-1679483068.pool.root.1
2023-03-22 19:44:02 (16152): Guest Log: No HITS file was produced
2023-03-22 19:44:02 (16152): Guest Log: Successfully finished the ATLAS job!
2023-03-22 19:44:02 (16152): Guest Log: Copying the results back to the shared directory!
2023-03-22 19:44:02 (16152): Guest Log:  *** Contents of shared directory: ***
2023-03-22 19:44:02 (16152): Guest Log: total 426760
2023-03-22 19:44:02 (16152): Guest Log: -rwxrwxrwx. 1 root root 436382292 Mar 22 14:20 ATLAS.root_0
2023-03-22 19:44:02 (16152): Guest Log: -rwxrwxrwx. 1 root root      8922 Mar 22 14:20 init_data.xml
2023-03-22 19:44:02 (16152): Guest Log: -rwxrwxrwx. 1 root root    398722 Mar 22 14:18 input.tar.gz
2023-03-22 19:44:02 (16152): Guest Log: -rwxrwxrwx. 1 root root    184320 Mar 22 18:44 result.tar.gz
2023-03-22 19:44:02 (16152): Guest Log: -rwxrwxrwx. 1 root root     17707 Mar 22 14:18 start_atlas.sh
2023-03-22 19:44:02 (16152): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-22 19:44:02 (16152): VM Completion File Detected.
2023-03-22 19:44:02 (16152): Powering off VM.
2023-03-22 19:44:03 (16152): Successfully stopped VM.
2023-03-22 19:44:03 (16152): Deregistering VM. (boinc_40b7df7c3bb90bcc, slot#10)
2023-03-22 19:44:03 (16152): Removing network bandwidth throttle group from VM.
2023-03-22 19:44:04 (16152): Removing VM from VirtualBox.
19:44:09 (16152): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN