Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-22 18:59:23 (9632): Detected: vboxwrapper 26206
2023-03-22 18:59:23 (9632): Detected: BOINC client v7.20.2
2023-03-22 18:59:24 (9632): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2023-03-22 18:59:24 (9632): Successfully copied 'init_data.xml' to the shared directory.
2023-03-22 18:59:24 (9632): Create VM. (boinc_c739a3c08a84275e, slot#1)
2023-03-22 18:59:25 (9632): Setting Memory Size for VM. (3500MB)
2023-03-22 18:59:25 (9632): Setting CPU Count for VM. (4)
2023-03-22 18:59:25 (9632): Setting Chipset Options for VM.
2023-03-22 18:59:26 (9632): Setting Graphics Controller Options for VM.
2023-03-22 18:59:26 (9632): Setting Boot Options for VM.
2023-03-22 18:59:26 (9632): Setting Network Configuration for NAT.
2023-03-22 18:59:26 (9632): Enabling VM Network Access.
2023-03-22 18:59:27 (9632): Disabling USB Support for VM.
2023-03-22 18:59:27 (9632): Disabling COM Port Support for VM.
2023-03-22 18:59:27 (9632): Disabling LPT Port Support for VM.
2023-03-22 18:59:27 (9632): Disabling Audio Support for VM.
2023-03-22 18:59:28 (9632): Disabling Clipboard Support for VM.
2023-03-22 18:59:28 (9632): Disabling Drag and Drop Support for VM.
2023-03-22 18:59:28 (9632): Adding storage controller(s) to VM.
2023-03-22 18:59:28 (9632): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-22 18:59:29 (9632): Adding VirtualBox Guest Additions to VM.
2023-03-22 18:59:29 (9632): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-22 18:59:29 (9632): forwarding host port 51212 to guest port 80
2023-03-22 18:59:30 (9632): Enabling remote desktop for VM.
2023-03-22 18:59:31 (9632): Enabling shared directory for VM.
2023-03-22 18:59:31 (9632): Starting VM using VBoxManage interface. (boinc_c739a3c08a84275e, slot#1)
2023-03-22 18:59:37 (9632): Successfully started VM. (PID = '12176')
2023-03-22 18:59:37 (9632): Reporting VM Process ID to BOINC.
2023-03-22 18:59:37 (9632): Guest Log: BIOS: VirtualBox 7.0.6
2023-03-22 18:59:37 (9632): Guest Log: CPUID EDX: 0x178bfbff
2023-03-22 18:59:37 (9632): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-03-22 18:59:37 (9632): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-22 18:59:37 (9632): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-22 18:59:37 (9632): Detected: Web Application Enabled (http://localhost:51212)
2023-03-22 18:59:37 (9632): Detected: Remote Desktop Enabled (localhost:51213)
2023-03-22 18:59:37 (9632): Preference change detected
2023-03-22 18:59:37 (9632): Setting CPU throttle for VM. (100%)
2023-03-22 18:59:38 (9632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-22 18:59:39 (9632): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-22 18:59:39 (9632): Guest Log: BIOS: Booting from Hard Disk...
2023-03-22 18:59:42 (9632): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-22 18:59:42 (9632): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-22 18:59:42 (9632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-22 18:59:50 (9632): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-22 18:59:50 (9632): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-22 19:00:05 (9632): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-22 19:00:05 (9632): Guest Log: 00:00:00.000162 main     Log opened 2023-03-22T18:00:02.908609000Z
2023-03-22 19:00:05 (9632): Guest Log: 00:00:00.000259 main     OS Product: Linux
2023-03-22 19:00:05 (9632): Guest Log: 00:00:00.000290 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-22 19:00:05 (9632): Guest Log: 00:00:00.000311 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-22 19:00:05 (9632): Guest Log: 00:00:00.000331 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-22 19:00:05 (9632): Guest Log: 00:00:00.000332 main     Process ID: 1292
2023-03-22 19:00:05 (9632): Guest Log: 00:00:00.000332 main     Package type: LINUX_64BITS_GENERIC
2023-03-22 19:00:05 (9632): Guest Log: 00:00:00.000773 main     5.2.32 r132073 started. Verbose level = 0
2023-03-22 19:00:05 (9632): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-22 19:00:05 (9632): Guest Log: [INFO] Mounting shared directory
2023-03-22 19:00:05 (9632): Guest Log: [INFO] Checking for init_data.xml
2023-03-22 19:00:09 (9632): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-22 19:00:09 (9632): Guest Log: [INFO] Detected branch: dev
2023-03-22 19:00:10 (9632): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-22 19:00:10 (9632): Guest Log: Copying input files
2023-03-22 19:00:18 (9632): Guest Log: Copied input files into RunAtlas.
2023-03-22 19:00:18 (9632): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-03-22 19:00:18 (9632): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-03-22 19:00:18 (9632): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-03-22 19:00:18 (9632): Guest Log: Further information can be found at the LHC@home message board.
2023-03-22 19:00:32 (9632): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-22 19:00:32 (9632): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-22 19:00:32 (9632): Guest Log: 2.6.3.0 1568 0 30172 117052 4 1 3116365 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2023-03-22 19:00:35 (9632): Guest Log: copied the webapp to /var/www
2023-03-22 19:00:35 (9632): Guest Log: ATHENA_PROC_NUMBER=4
2023-03-22 19:00:35 (9632): Guest Log: ATHENA_CORE_NUMBER=4
2023-03-22 19:00:35 (9632): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-22 19:00:35 (9632): Guest Log:  *** Starting ATLAS job. (PandaID=5753961892 taskID=32413688) ***
2023-03-22 19:46:01 (9632): Preference change detected
2023-03-22 19:46:01 (9632): Setting CPU throttle for VM. (100%)
2023-03-22 19:46:01 (9632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-22 19:46:12 (9632): Preference change detected
2023-03-22 19:46:12 (9632): Setting CPU throttle for VM. (100%)
2023-03-22 19:46:12 (9632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-22 19:49:50 (9632): Preference change detected
2023-03-22 19:49:50 (9632): Setting CPU throttle for VM. (100%)
2023-03-22 19:49:50 (9632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-22 19:54:01 (9632): Preference change detected
2023-03-22 19:54:01 (9632): Setting CPU throttle for VM. (100%)
2023-03-22 19:54:01 (9632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-22 19:54:09 (9632): VM state change detected. (old = 'running', new = 'paused')
2023-03-22 19:56:39 (9632): Preference change detected
2023-03-22 19:56:39 (9632): Setting CPU throttle for VM. (100%)
2023-03-22 19:56:39 (9632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-22 19:56:40 (9632): VM state change detected. (old = 'paused', new = 'running')
2023-03-22 19:59:13 (9632): VM state change detected. (old = 'running', new = 'paused')
2023-03-22 21:07:44 (9632): VM state change detected. (old = 'paused', new = 'running')
2023-03-22 21:07:48 (9632): Guest Log: 00:56:42.262344 timesync vgsvcTimeSyncWorker: Radical host time change: 4 120 542 000 000ns (HostNow=1 679 515 667 257 000 000 ns HostLast=1 679 511 546 715 000 000 ns)
2023-03-22 21:07:58 (9632): Guest Log: 00:56:52.263361 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 272 087 387 000ns (GuestNow=1 679 515 677 258 098 000 ns GuestLast=1 679 511 405 170 711 000 ns fSetTimeLastLoop=true )
2023-03-22 21:10:57 (9632): Guest Log:  *** Job finished ***
2023-03-22 21:10:57 (9632): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:39,733 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:39,734 | INFO     | [job] queue monitor thread has finished
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:40,816 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:44,211 | INFO     | [data] queue_monitor thread has finished
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:54,803 | INFO     | job.realtimelogging is not enabled
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:54,803 | INFO     | [payload] run_realtimelog thread has finished
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,400 | INFO     | end of generic workflow (traces error code: 0)
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,400 | INFO     | traces error code: 0
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,400 | INFO     | pilot has finished
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,433 [wrapper] ==== pilot stdout END ====
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,435 [wrapper] ==== wrapper stdout RESUME ====
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,438 [wrapper] pilotpid: 5418
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,441 [wrapper] Pilot exit status: 0
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,501 [wrapper] pandaids: 5753961892
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,505 [wrapper] apfmon messages muted
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,508 [wrapper] Test setup, not cleaning
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,510 [wrapper] ==== wrapper stdout END ====
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,513 [wrapper] ==== wrapper stderr END ====
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,517 [wrapper] wrapperexiting ec=0, duration=7819
2023-03-22 21:10:57 (9632): Guest Log: 2023-03-22 20:10:55,520 [wrapper] apfmon messages muted
2023-03-22 21:10:57 (9632): Guest Log:  *** Error codes and diagnostics ***
2023-03-22 21:10:57 (9632): Guest Log:     "exeErrorCode": 65,
2023-03-22 21:10:57 (9632): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2023-03-22 21:10:57 (9632): Guest Log:     "pilotErrorCode": 1305,
2023-03-22 21:10:57 (9632): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-03-22 20:08:25,612 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2023-03-22 21:10:57 (9632): Guest Log:  *** Listing of results directory ***
2023-03-22 21:10:57 (9632): Guest Log: total 3680
2023-03-22 21:10:57 (9632): Guest Log: -rw-r--r--. 1 atlas atlas  386707 Mar 22 10:25 pilot3.tar.gz
2023-03-22 21:10:57 (9632): Guest Log: -rw-r--r--. 1 atlas atlas    4336 Mar 22 11:06 queuedata.json
2023-03-22 21:10:57 (9632): Guest Log: -rwx------. 1 atlas atlas   27542 Mar 22 11:08 runpilot2-wrapper.sh
2023-03-22 21:10:57 (9632): Guest Log: -rwxr-xr-x. 1 atlas atlas    8974 Mar 22 18:00 init_data.xml
2023-03-22 21:10:57 (9632): Guest Log: -rwxr-xr-x. 1 atlas atlas  398723 Mar 22 18:00 input.tar.gz
2023-03-22 21:10:57 (9632): Guest Log: -rwxr-xr-x. 1 atlas atlas   17707 Mar 22 18:00 start_atlas.sh
2023-03-22 21:10:57 (9632): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 22 18:00 EVNT.29838250._000010.pool.root.1 -> /data/./ATLAS.root_0
2023-03-22 21:10:57 (9632): Guest Log: -rw-r--r--. 1 atlas atlas    2553 Mar 22 18:00 pandaJob.out
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas     284 Mar 22 18:00 setup.sh.local
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas  982221 Mar 22 18:01 agis_schedconf.cvmfs.json
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas 1426500 Mar 22 18:01 agis_ddmendpoints.agis.ALL.json
2023-03-22 21:10:57 (9632): Guest Log: drwx------. 4 atlas atlas     245 Mar 22 18:01 pilot3
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas     996 Mar 22 20:08 memory_monitor_summary.json
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas   32999 Mar 22 20:08 log.32413688._000229-2542047-1679483289.job.log.tgz.1
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas    8544 Mar 22 20:10 heartbeat.json
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas    3018 Mar 22 20:10 pilotlog.txt
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas  176867 Mar 22 20:10 log.32413688._000229-2542047-1679483289.job.log.1
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas     220 Mar 22 20:10 output.list
2023-03-22 21:10:57 (9632): Guest Log: -rw-r--r--. 1 atlas atlas     677 Mar 22 20:10 runtime_log
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas  225280 Mar 22 20:10 result.tar.gz
2023-03-22 21:10:57 (9632): Guest Log: -rw-r--r--. 1 atlas atlas   10937 Mar 22 20:10 runtime_log.err
2023-03-22 21:10:57 (9632): Guest Log: -rw-------. 1 atlas atlas     637 Mar 22 20:10 9pMMDmLVBz2n7Olcko1bjSoqABFKDmABFKDm7AsVDmpZGKDmTeSxhm.diag
2023-03-22 21:10:57 (9632): Guest Log: Looking for outputfile HITS.32413688._000229-2542047-1679483289.pool.root.1
2023-03-22 21:10:57 (9632): Guest Log: No HITS file was produced
2023-03-22 21:10:57 (9632): Guest Log: Successfully finished the ATLAS job!
2023-03-22 21:10:57 (9632): Guest Log: Copying the results back to the shared directory!
2023-03-22 21:10:57 (9632): Guest Log:  *** Contents of shared directory: ***
2023-03-22 21:10:57 (9632): Guest Log: total 426800
2023-03-22 21:10:57 (9632): Guest Log: -rwxrwxrwx. 1 root root 436382292 Mar 22 17:59 ATLAS.root_0
2023-03-22 21:10:57 (9632): Guest Log: -rwxrwxrwx. 1 root root      8974 Mar 22 17:59 init_data.xml
2023-03-22 21:10:57 (9632): Guest Log: -rwxrwxrwx. 1 root root    398723 Mar 22 15:53 input.tar.gz
2023-03-22 21:10:57 (9632): Guest Log: -rwxrwxrwx. 1 root root    225280 Mar 22 20:10 result.tar.gz
2023-03-22 21:10:57 (9632): Guest Log: -rwxrwxrwx. 1 root root     17707 Mar 22 15:53 start_atlas.sh
2023-03-22 21:10:57 (9632): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-22 21:10:57 (9632): VM Completion File Detected.
2023-03-22 21:10:57 (9632): Powering off VM.
2023-03-22 21:10:57 (9632): Successfully stopped VM.
2023-03-22 21:10:57 (9632): Deregistering VM. (boinc_c739a3c08a84275e, slot#1)
2023-03-22 21:10:57 (9632): Removing network bandwidth throttle group from VM.
2023-03-22 21:10:58 (9632): Removing VM from VirtualBox.
21:11:03 (9632): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN