Name | gGkKDmyxeB3n7Olcko1bjSoqABFKDmABFKDm7AsVDmaDIKDmDlGr6m_1 |
Workunit | 2302305 |
Created | 25 Apr 2023, 21:28:40 UTC |
Sent | 25 Apr 2023, 21:33:39 UTC |
Report deadline | 2 May 2023, 21:33:39 UTC |
Received | 25 Apr 2023, 23:21:36 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4433 |
Run time | 55 min 28 sec |
CPU time | 16 min 42 sec |
Validate state | Valid |
Credit | 31.68 |
Device peak FLOPS | 5.37 GFLOPS |
Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.49 GB |
Peak swap size | 11.38 GB |
Peak disk usage | 80.94 MB |
<core_client_version>7.9.3</core_client_version> <![CDATA[ <stderr_txt> 17:36:31 (7525): wrapper (7.7.26015): starting 17:36:31 (7525): wrapper: running run_atlas (--nthreads 1) [2023-04-25 17:36:31] Arguments: --nthreads 1 [2023-04-25 17:36:31] Threads: 1 [2023-04-25 17:36:31] Checking for CVMFS [2023-04-25 17:36:32] Probing /cvmfs/atlas.cern.ch... OK [2023-04-25 17:36:34] Probing /cvmfs/atlas-condb.cern.ch... OK [2023-04-25 17:36:34] Running cvmfs_config stat atlas.cern.ch [2023-04-25 17:36:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2023-04-25 17:36:36] 2.9.2.0 25116 56 39452 118281 3 58 2201832 4194305 0 130560 0 56457 93.177 542856 2430 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1 [2023-04-25 17:36:36] CVMFS is ok [2023-04-25 17:36:36] Efficiency of ATLAS tasks can be improved by the following measure(s): [2023-04-25 17:36:36] Small home clusters do not require a local http proxy but it is suggested if [2023-04-25 17:36:36] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks. [2023-04-25 17:36:36] Further information can be found at the LHC@home message board. [2023-04-25 17:36:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2023-04-25 17:36:36] Checking for apptainer binary... [2023-04-25 17:36:36] apptainer is not installed, using version from CVMFS [2023-04-25 17:36:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2023-04-25 17:36:42] 2700x [2023-04-25 17:36:42] apptainer works [2023-04-25 17:36:42] Starting ATLAS job with PandaID=5831364361 [2023-04-25 17:36:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2023-04-25 18:31:56] *** The last 200 lines of the pilot log: *** [2023-04-25 18:31:56] x86-64-v3 [2023-04-25 18:31:56] 2023-04-25 22:31:30,921 | DEBUG | pilot.user.atlas.utilities | get_cpu_arch | CPU arch script returned: x86-64-v3 [2023-04-25 18:31:56] 2023-04-25 22:31:30,921 | DEBUG | pilot.control.job | get_data_structure | cpu arch=x86-64-v3 [2023-04-25 18:31:56] 2023-04-25 22:31:30,921 | INFO | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/13/PanDA_Pilot-5831364361/memory_monitor_summary.json (trf n [2023-04-25 18:31:56] 2023-04-25 22:31:30,936 | DEBUG | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Avg': {'nprocs': 5.3629999999999995, 'nthreads': 6.06, 'pss': 993279.0, 'rchar' [2023-04-25 18:31:56] 2023-04-25 22:31:30,936 | INFO | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json [2023-04-25 18:31:56] 2023-04-25 22:31:30,937 | INFO | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json [2023-04-25 18:31:56] 2023-04-25 22:31:30,937 | INFO | pilot.util.timing | timing_report | .............................. [2023-04-25 18:31:56] 2023-04-25 22:31:30,937 | INFO | pilot.util.timing | timing_report | . Timing measurements: [2023-04-25 18:31:56] 2023-04-25 22:31:30,937 | INFO | pilot.util.timing | timing_report | . get job = 55 s [2023-04-25 18:31:56] 2023-04-25 22:31:30,937 | INFO | pilot.util.timing | timing_report | . initial setup = 70 s [2023-04-25 18:31:56] 2023-04-25 22:31:30,937 | INFO | pilot.util.timing | timing_report | . payload setup = 199 s [2023-04-25 18:31:56] 2023-04-25 22:31:30,937 | INFO | pilot.util.timing | timing_report | . stage-in = 85 s [2023-04-25 18:31:56] 2023-04-25 22:31:30,937 | INFO | pilot.util.timing | timing_report | . payload execution = 2068 s [2023-04-25 18:31:56] 2023-04-25 22:31:30,938 | INFO | pilot.util.timing | timing_report | . stage-out = 313 s [2023-04-25 18:31:56] 2023-04-25 22:31:30,938 | INFO | pilot.util.timing | timing_report | .............................. [2023-04-25 18:31:56] 2023-04-25 22:31:30,938 | DEBUG | pilot.control.job | send_state | data={'jobId': '5831364361', 'state': 'finished', 'timestamp': '2023-04-25T18:29:33-05:00', 'siteNam [2023-04-25 18:31:56] 2023-04-25 22:31:30,940 | DEBUG | pilot.control.job | write_heartbeat_to_file | heartbeat dictionary: {'jobId': '5831364361', 'state': 'finished', 'timestamp': '2023-04-25T18:29:33 [2023-04-25 18:31:56] 2023-04-25 22:31:30,941 | DEBUG | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file: /var/lib/boinc-client/slots/13/heartbeat.json [2023-04-25 18:31:56] 2023-04-25 22:31:31,527 | INFO | pilot.control.job | make_job_report | [2023-04-25 18:31:56] 2023-04-25 22:31:31,529 | INFO | pilot.control.job | make_job_report | job summary report [2023-04-25 18:31:56] 2023-04-25 22:31:31,529 | INFO | pilot.control.job | make_job_report | -------------------------------------------------- [2023-04-25 18:31:56] 2023-04-25 22:31:31,529 | INFO | pilot.control.job | make_job_report | PanDA job id: 5831364361 [2023-04-25 18:31:56] 2023-04-25 22:31:31,529 | INFO | pilot.control.job | make_job_report | task id: NULL [2023-04-25 18:31:56] 2023-04-25 22:31:31,529 | INFO | pilot.control.job | make_job_report | errors: (none) [2023-04-25 18:31:56] 2023-04-25 22:31:31,530 | INFO | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE [2023-04-25 18:31:56] 2023-04-25 22:31:31,530 | INFO | pilot.control.job | make_job_report | pilot state: finished [2023-04-25 18:31:56] 2023-04-25 22:31:31,530 | INFO | pilot.control.job | make_job_report | transexitcode: 0 [2023-04-25 18:31:56] 2023-04-25 22:31:31,530 | INFO | pilot.control.job | make_job_report | exeerrorcode: 0 [2023-04-25 18:31:56] 2023-04-25 22:31:31,530 | INFO | pilot.control.job | make_job_report | exeerrordiag: [2023-04-25 18:31:56] 2023-04-25 22:31:31,531 | INFO | pilot.control.job | make_job_report | exitcode: 0 [2023-04-25 18:31:56] 2023-04-25 22:31:31,540 | INFO | pilot.control.job | make_job_report | exitmsg: OK [2023-04-25 18:31:56] 2023-04-25 22:31:31,540 | INFO | pilot.control.job | make_job_report | cpuconsumptiontime: 999 s [2023-04-25 18:31:56] 2023-04-25 22:31:31,541 | INFO | pilot.control.job | make_job_report | nevents: 2 [2023-04-25 18:31:56] 2023-04-25 22:31:31,541 | INFO | pilot.control.job | make_job_report | neventsw: 0 [2023-04-25 18:31:56] 2023-04-25 22:31:31,541 | INFO | pilot.control.job | make_job_report | pid: 18596 [2023-04-25 18:31:56] 2023-04-25 22:31:31,541 | INFO | pilot.control.job | make_job_report | pgrp: 18596 [2023-04-25 18:31:56] 2023-04-25 22:31:31,541 | INFO | pilot.control.job | make_job_report | corecount: 1 [2023-04-25 18:31:56] 2023-04-25 22:31:31,541 | INFO | pilot.control.job | make_job_report | event service: False [2023-04-25 18:31:56] 2023-04-25 22:31:31,541 | INFO | pilot.control.job | make_job_report | sizes: {0: 2585561, 1: 2585589, 2: 2585788, 13: 2585788, 24: 2585844, 35: 2585872, 46: 2586028, 57: [2023-04-25 18:31:56] 2023-04-25 22:31:31,542 | INFO | pilot.control.job | make_job_report | -------------------------------------------------- [2023-04-25 18:31:56] 2023-04-25 22:31:31,542 | INFO | pilot.control.job | make_job_report | [2023-04-25 18:31:56] 2023-04-25 22:31:31,542 | DEBUG | pilot.control.job | has_job_completed | ls -lF /var/lib/boinc-client/slots/13: [2023-04-25 18:31:56] [2023-04-25 18:31:56] 2023-04-25 22:31:31,543 | INFO | pilot.util.container | print_executable | executing command: ls -lF /var/lib/boinc-client/slots/13 [2023-04-25 18:31:56] 2023-04-25 22:31:32,080 | DEBUG | pilot.control.job | has_job_completed | total 42556 [2023-04-25 18:31:56] -rw------- 1 boinc boinc 380992 Apr 25 18:31 ae348625-4e19-44d6-a896-fd6e2b6bb68b_65869.1.job.log [2023-04-25 18:31:56] -rw------- 1 boinc boinc 184096 Apr 25 18:27 ae348625-4e19-44d6-a896-fd6e2b6bb68b_65869.1.job.log.tgz [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1017384 Apr 25 17:40 agis_schedconf.cvmfs.json [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 0 Apr 25 17:36 boinc_lockfile [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 8192 Apr 25 18:31 boinc_mmap_file [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 534 Apr 25 18:23 boinc_task_state.xml [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1450330 Apr 25 17:40 cric_ddmendpoints.json [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 37738636 Apr 25 17:36 EVNT.04972714._000024.pool.root.1 [2023-04-25 18:31:56] -rw------- 1 boinc boinc 128 Apr 25 17:36 gGkKDmyxeB3n7Olcko1bjSoqABFKDmABFKDm7AsVDmaDIKDmDlGr6m.diag [2023-04-25 18:31:56] -rw------- 1 boinc boinc 8009 Apr 25 18:31 heartbeat.json [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 9174 Apr 25 17:36 init_data.xml [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 423947 Apr 25 17:36 input.tar.gz [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 112 Apr 25 17:36 job.xml [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1038 Apr 25 18:24 memory_monitor_summary.json [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1410890 Apr 25 18:23 output.1.ae348625-4e19-44d6-a896-fd6e2b6bb68b_65869.pool.root [2023-04-25 18:31:56] -rw------- 1 boinc boinc 464 Apr 25 18:29 output.list [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 2663 Apr 25 17:36 pandaJob.out [2023-04-25 18:31:56] drwxrwx--- 2 boinc boinc 4096 Apr 25 18:29 PanDA_Pilot-5831364361/ [2023-04-25 18:31:56] drwx------ 4 boinc boinc 4096 Apr 25 17:41 pilot3/ [2023-04-25 18:31:56] -rw------- 1 boinc boinc 412460 Apr 25 17:01 pilot3.tar.gz [2023-04-25 18:31:56] -rw------- 1 boinc boinc 368828 Apr 25 18:31 pilotlog.txt [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 4388 Apr 25 17:01 queuedata.json [2023-04-25 18:31:56] -rwxr-xr-x 1 boinc boinc 7986 Apr 25 17:36 run_atlas* [2023-04-25 18:31:56] -rwx------ 1 boinc boinc 27540 Apr 25 17:01 runpilot2-wrapper.sh* [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 407 Apr 25 17:36 runtime_log [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 7841 Apr 25 17:36 runtime_log.err [2023-04-25 18:31:56] -rw------- 1 boinc boinc 424 Apr 25 17:36 setup.sh.local [2023-04-25 18:31:56] drwxrwx--x 2 boinc boinc 4096 Apr 25 17:36 shared/ [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 17632 Apr 25 17:36 start_atlas.sh [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 2035 Apr 25 17:36 stderr.txt [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 107 Apr 25 17:36 wrapper_26015_x86_64-pc-linux-gnu [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 25 Apr 25 18:31 wrapper_checkpoint.txt [2023-04-25 18:31:56] 2023-04-25 22:31:32,081 | INFO | pilot.util.queuehandling | queue_report | queue jobs had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,082 | INFO | pilot.util.queuehandling | queue_report | queue payloads had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,082 | INFO | pilot.util.queuehandling | queue_report | queue data_in had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,083 | INFO | pilot.util.queuehandling | queue_report | queue data_out had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,083 | INFO | pilot.util.queuehandling | queue_report | queue current_data_in had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,084 | INFO | pilot.util.queuehandling | queue_report | queue validated_jobs had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,084 | INFO | pilot.util.queuehandling | queue_report | queue validated_payloads had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,084 | INFO | pilot.util.queuehandling | queue_report | queue monitored_payloads had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,084 | INFO | pilot.util.queuehandling | queue_report | queue finished_jobs had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,085 | INFO | pilot.util.queuehandling | queue_report | queue finished_payloads had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,085 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_in had 1 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,085 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_out had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,086 | INFO | pilot.util.queuehandling | queue_report | queue failed_jobs had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,086 | INFO | pilot.util.queuehandling | queue_report | queue failed_payloads had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,086 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_in had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,086 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_out had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,086 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobs had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,087 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s) [2023-04-25 18:31:56] 2023-04-25 22:31:32,092 | INFO | pilot.util.queuehandling | queue_report | queue realtimelog_payloads had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,093 | INFO | pilot.util.queuehandling | queue_report | queue messages had 0 job(s) [purged] [2023-04-25 18:31:56] 2023-04-25 22:31:32,093 | INFO | pilot.control.job | has_job_completed | job 5831364361 has completed (purged errors) [2023-04-25 18:31:56] 2023-04-25 22:31:32,093 | DEBUG | pilot.util.realtimelogger | cleanup | attempting real-time logger cleanup [2023-04-25 18:31:56] 2023-04-25 22:31:32,093 | INFO | pilot.util.processes | cleanup | overall cleanup function is called [2023-04-25 18:31:56] 2023-04-25 22:31:32,116 | DEBUG | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/13/PanDA_Pilot-5831364361 [2023-04-25 18:31:56] 2023-04-25 22:31:33,123 | INFO | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [18596] [2023-04-25 18:31:56] 2023-04-25 22:31:33,124 | INFO | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 18596 [2023-04-25 18:31:56] 2023-04-25 22:31:33,125 | INFO | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes [2023-04-25 18:31:56] 2023-04-25 22:31:34,127 | INFO | pilot.util.processes | cleanup | collected zombie processes [2023-04-25 18:31:56] 2023-04-25 22:31:34,128 | INFO | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=18596 [2023-04-25 18:31:56] 2023-04-25 22:31:35,032 | INFO | pilot.util.processes | kill_processes | process IDs to be killed: [18596] (in reverse order) [2023-04-25 18:31:56] 2023-04-25 22:31:36,004 | WARNING | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) [2023-04-25 18:31:56] 2023-04-25 22:31:36,009 | INFO | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs [2023-04-25 18:31:56] 2023-04-25 22:31:36,010 | DEBUG | pilot.util.queuehandling | purge_queue | queue purged [2023-04-25 18:31:56] 2023-04-25 22:31:36,010 | INFO | pilot.control.job | retrieve | ready for new job [2023-04-25 18:31:56] 2023-04-25 22:31:36,010 | INFO | root | retrieve | pilot has finished with previous job - re-establishing logging [2023-04-25 18:31:56] 2023-04-25 22:31:36,013 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-04-25 18:31:56] 2023-04-25 22:31:36,028 | INFO | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 3.6.0 (66) *** [2023-04-25 18:31:56] 2023-04-25 22:31:36,029 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-04-25 18:31:56] 2023-04-25 22:31:36,029 | INFO | pilot.util.auxiliary | pilot_version_banner | [2023-04-25 18:31:56] 2023-04-25 22:31:36,049 | INFO | pilot.util.auxiliary | display_architecture_info | architecture information: [2023-04-25 18:31:56] 2023-04-25 22:31:36,056 | INFO | pilot.util.container | print_executable | executing command: cat /etc/os-release [2023-04-25 18:31:56] 2023-04-25 22:31:36,372 | INFO | pilot.util.filehandling | dump | cat /etc/os-release: [2023-04-25 18:31:56] NAME="CentOS Linux" [2023-04-25 18:31:56] VERSION="7 (Core)" [2023-04-25 18:31:56] ID="centos" [2023-04-25 18:31:56] ID_LIKE="rhel fedora" [2023-04-25 18:31:56] VERSION_ID="7" [2023-04-25 18:31:56] PRETTY_NAME="CentOS Linux 7 (Core)" [2023-04-25 18:31:56] ANSI_COLOR="0;31" [2023-04-25 18:31:56] CPE_NAME="cpe:/o:centos:centos:7" [2023-04-25 18:31:56] HOME_URL="https://www.centos.org/" [2023-04-25 18:31:56] BUG_REPORT_URL="https://bugs.centos.org/" [2023-04-25 18:31:56] [2023-04-25 18:31:56] CENTOS_MANTISBT_PROJECT="CentOS-7" [2023-04-25 18:31:56] CENTOS_MANTISBT_PROJECT_VERSION="7" [2023-04-25 18:31:56] REDHAT_SUPPORT_PRODUCT="centos" [2023-04-25 18:31:56] REDHAT_SUPPORT_PRODUCT_VERSION="7" [2023-04-25 18:31:56] [2023-04-25 18:31:56] 2023-04-25 22:31:36,374 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-04-25 18:31:56] 2023-04-25 22:31:36,880 | DEBUG | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/13 [2023-04-25 18:31:56] 2023-04-25 22:31:36,881 | INFO | pilot.util.container | print_executable | executing command: df -mP /var/lib/boinc-client/slots/13 [2023-04-25 18:31:56] 2023-04-25 22:31:37,191 | DEBUG | pilot.util.workernode | get_local_disk_space | stdout=Filesystem 1048576-blocks Used Available Capacity Mounted on [2023-04-25 18:31:56] /dev/nvme0n1p2 479119 162985 291725 36% /var/lib/boinc-client/slots/13 [2023-04-25 18:31:56] 2023-04-25 22:31:37,192 | DEBUG | pilot.util.workernode | get_local_disk_space | stderr= [2023-04-25 18:31:56] 2023-04-25 22:31:37,192 | INFO | pilot.util.monitoring | check_local_space | sufficient remaining disk space (305895833600 B) [2023-04-25 18:31:56] 2023-04-25 22:31:37,192 | WARNING | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job [2023-04-25 18:31:56] 2023-04-25 22:31:37,193 | DEBUG | pilot.control.job | retrieve | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:37,193 | INFO | pilot.control.job | retrieve | [job] retrieve thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:37,194 | WARNING | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration [2023-04-25 18:31:56] 2023-04-25 22:31:37,195 | WARNING | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration [2023-04-25 18:31:56] 2023-04-25 22:31:37,199 | DEBUG | pilot.control.job | create_data_payload | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:37,201 | INFO | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:37,201 | WARNING | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration [2023-04-25 18:31:56] 2023-04-25 22:31:37,202 | DEBUG | pilot.control.job | queue_monitor | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:37,202 | INFO | pilot.control.job | queue_monitor | [job] queue monitor thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:37,635 | DEBUG | pilot.control.data | control | data control ending since graceful_stop has been set [2023-04-25 18:31:56] 2023-04-25 22:31:37,637 | DEBUG | pilot.control.data | control | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:37,637 | INFO | pilot.control.data | control | [data] control thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:37,671 | DEBUG | pilot.control.job | control | job control ending since graceful_stop has been set [2023-04-25 18:31:56] 2023-04-25 22:31:37,672 | DEBUG | pilot.control.job | control | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:37,673 | INFO | pilot.control.job | control | [job] control thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:37,790 | DEBUG | pilot.control.payload | control | payload control ending since graceful_stop has been set [2023-04-25 18:31:56] 2023-04-25 22:31:37,791 | DEBUG | pilot.control.payload | control | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:37,792 | INFO | pilot.control.payload | control | [payload] control thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:37,835 | DEBUG | pilot.control.payload | validate_post | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:37,837 | INFO | pilot.control.payload | validate_post | [payload] validate_post thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:38,092 | INFO | pilot.control.monitor | control | [monitor] control thread has ended [2023-04-25 18:31:56] 2023-04-25 22:31:38,195 | DEBUG | pilot.control.data | copytool_out | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:38,196 | INFO | pilot.control.data | copytool_out | [data] copytool_out thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:38,206 | DEBUG | pilot.control.payload | validate_pre | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:38,207 | INFO | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:38,208 | DEBUG | pilot.control.job | validate | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:38,209 | INFO | pilot.control.job | validate | [job] validate thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:38,251 | DEBUG | pilot.control.data | copytool_in | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:38,253 | INFO | pilot.control.data | copytool_in | [data] copytool_in thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:38,255 | DEBUG | pilot.control.payload | execute_payloads | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:38,256 | INFO | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:38,279 | DEBUG | pilot.control.payload | failed_post | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:38,280 | INFO | pilot.control.payload | failed_post | [payload] failed_post thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:40,212 | DEBUG | pilot.control.data | queue_monitoring | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:40,213 | INFO | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:48,027 | INFO | pilot.control.payload | get_logging_info | job.realtimelogging is not enabled [2023-04-25 18:31:56] 2023-04-25 22:31:48,028 | DEBUG | pilot.control.payload | run_realtimelog | real-time logging not needed at this point [2023-04-25 18:31:56] 2023-04-25 22:31:48,028 | DEBUG | pilot.control.payload | run_realtimelog | realtime logger was not found, waiting .. [2023-04-25 18:31:56] 2023-04-25 22:31:48,028 | DEBUG | pilot.control.payload | run_realtimelog | will not set job_aborted yet [2023-04-25 18:31:56] 2023-04-25 22:31:48,028 | INFO | pilot.control.payload | run_realtimelog | [payload] run_realtimelog thread has finished [2023-04-25 18:31:56] 2023-04-25 22:31:48,524 | DEBUG | pilot.util.processes | threads_aborted | aborting since only the main Pilot thread is still running (total thread count=1 with 0 daemon threa [2023-04-25 18:31:56] 2023-04-25 22:31:48,525 | DEBUG | pilot.workflow.generic | run | all relevant threads have aborted (thread count=1) [2023-04-25 18:31:56] 2023-04-25 22:31:48,525 | INFO | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) [2023-04-25 18:31:56] 2023-04-25 22:31:48,526 | INFO | root | wrap_up | traces error code: 0 [2023-04-25 18:31:56] 2023-04-25 22:31:48,526 | INFO | root | wrap_up | pilot has finished (exit code=0, shell exit code=0) [2023-04-25 18:31:56] 2023-04-25 22:31:49,475 [wrapper] ==== pilot stdout END ==== [2023-04-25 18:31:56] 2023-04-25 22:31:49,631 [wrapper] ==== wrapper stdout RESUME ==== [2023-04-25 18:31:56] 2023-04-25 22:31:49,776 [wrapper] pilotpid: 11179 [2023-04-25 18:31:56] 2023-04-25 22:31:49,939 [wrapper] Pilot exit status: 0 [2023-04-25 18:31:56] 2023-04-25 22:31:50,352 [wrapper] pandaids: 5831364361 [2023-04-25 18:31:56] 2023-04-25 22:31:50,563 [wrapper] apfmon messages muted [2023-04-25 18:31:56] 2023-04-25 22:31:50,663 [wrapper] Test setup, not cleaning [2023-04-25 18:31:56] 2023-04-25 22:31:50,805 [wrapper] ==== wrapper stdout END ==== [2023-04-25 18:31:56] 2023-04-25 22:31:50,953 [wrapper] ==== wrapper stderr END ==== [2023-04-25 18:31:56] 2023-04-25 22:31:51,243 [wrapper] wrapperexiting ec=0, duration=3304 [2023-04-25 18:31:56] 2023-04-25 22:31:51,395 [wrapper] apfmon messages muted [2023-04-25 18:31:56] *** Error codes and diagnostics *** [2023-04-25 18:31:56] "exeErrorCode": 0, [2023-04-25 18:31:56] "exeErrorDiag": "", [2023-04-25 18:31:56] "pilotErrorCode": 0, [2023-04-25 18:31:56] "pilotErrorDiag": "", [2023-04-25 18:31:56] *** Listing of results directory *** [2023-04-25 18:31:56] total 44216 [2023-04-25 18:31:56] -rwx------ 1 boinc boinc 27540 Apr 25 17:01 runpilot2-wrapper.sh [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 4388 Apr 25 17:01 queuedata.json [2023-04-25 18:31:56] -rw------- 1 boinc boinc 412460 Apr 25 17:01 pilot3.tar.gz [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 107 Apr 25 17:36 wrapper_26015_x86_64-pc-linux-gnu [2023-04-25 18:31:56] -rwxr-xr-x 1 boinc boinc 7986 Apr 25 17:36 run_atlas [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 112 Apr 25 17:36 job.xml [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 17632 Apr 25 17:36 start_atlas.sh [2023-04-25 18:31:56] drwxrwx--x 2 boinc boinc 4096 Apr 25 17:36 shared [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 423947 Apr 25 17:36 input.tar.gz [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 9174 Apr 25 17:36 init_data.xml [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 37738636 Apr 25 17:36 EVNT.04972714._000024.pool.root.1 [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 0 Apr 25 17:36 boinc_lockfile [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 2663 Apr 25 17:36 pandaJob.out [2023-04-25 18:31:56] -rw------- 1 boinc boinc 424 Apr 25 17:36 setup.sh.local [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1450330 Apr 25 17:40 cric_ddmendpoints.json [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1017384 Apr 25 17:40 agis_schedconf.cvmfs.json [2023-04-25 18:31:56] drwx------ 4 boinc boinc 4096 Apr 25 17:41 pilot3 [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1410890 Apr 25 18:23 output.1.ae348625-4e19-44d6-a896-fd6e2b6bb68b_65869.pool.root [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 534 Apr 25 18:23 boinc_task_state.xml [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1038 Apr 25 18:24 memory_monitor_summary.json [2023-04-25 18:31:56] -rw------- 1 boinc boinc 184096 Apr 25 18:27 ae348625-4e19-44d6-a896-fd6e2b6bb68b_65869.1.job.log.tgz [2023-04-25 18:31:56] -rw------- 1 boinc boinc 8009 Apr 25 18:31 heartbeat.json [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 25 Apr 25 18:31 wrapper_checkpoint.txt [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 8192 Apr 25 18:31 boinc_mmap_file [2023-04-25 18:31:56] -rw------- 1 boinc boinc 8787 Apr 25 18:31 pilotlog.txt [2023-04-25 18:31:56] -rw------- 1 boinc boinc 397775 Apr 25 18:31 ae348625-4e19-44d6-a896-fd6e2b6bb68b_65869.1.job.log [2023-04-25 18:31:56] -rw------- 1 boinc boinc 464 Apr 25 18:31 output.list [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 748 Apr 25 18:31 runtime_log [2023-04-25 18:31:56] -rw------- 1 boinc boinc 2017280 Apr 25 18:31 result.tar.gz [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 11957 Apr 25 18:31 runtime_log.err [2023-04-25 18:31:56] -rw------- 1 boinc boinc 634 Apr 25 18:31 gGkKDmyxeB3n7Olcko1bjSoqABFKDmABFKDm7AsVDmaDIKDmDlGr6m.diag [2023-04-25 18:31:56] -rw-r--r-- 1 boinc boinc 29337 Apr 25 18:31 stderr.txt [2023-04-25 18:31:56] HITS file was successfully produced: [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1410890 Apr 25 18:23 shared/HITS.pool.root.1 [2023-04-25 18:31:56] *** Contents of shared directory: *** [2023-04-25 18:31:56] total 40644 [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 17632 Apr 25 17:36 start_atlas.sh [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 423947 Apr 25 17:36 input.tar.gz [2023-04-25 18:31:56] -rw-r--r-- 2 boinc boinc 37738636 Apr 25 17:36 ATLAS.root_0 [2023-04-25 18:31:56] -rw------- 1 boinc boinc 1410890 Apr 25 18:23 HITS.pool.root.1 [2023-04-25 18:31:56] -rw------- 1 boinc boinc 2017280 Apr 25 18:31 result.tar.gz 18:31:58 (7525): run_atlas exited; CPU time 1002.570134 18:31:58 (7525): called boinc_finish(0) </stderr_txt> ]]>
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