Name | 0FdNDmNLhB3n7Olcko1bjSoqABFKDmABFKDm7AsVDmFEIKDmPo0c6n_0 |
Workunit | 2302344 |
Created | 25 Apr 2023, 23:33:41 UTC |
Sent | 25 Apr 2023, 23:39:12 UTC |
Report deadline | 2 May 2023, 23:39:12 UTC |
Received | 26 Apr 2023, 0:47:29 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4433 |
Run time | 48 min 53 sec |
CPU time | 13 min 40 sec |
Validate state | Valid |
Credit | 27.90 |
Device peak FLOPS | 5.37 GFLOPS |
Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.43 GB |
Peak swap size | 10.56 GB |
Peak disk usage | 81.12 MB |
<core_client_version>7.9.3</core_client_version> <![CDATA[ <stderr_txt> 19:45:31 (14566): wrapper (7.7.26015): starting 19:45:31 (14566): wrapper: running run_atlas (--nthreads 1) [2023-04-25 19:45:32] Arguments: --nthreads 1 [2023-04-25 19:45:32] Threads: 1 [2023-04-25 19:45:32] Checking for CVMFS [2023-04-25 19:45:33] Probing /cvmfs/atlas.cern.ch... OK [2023-04-25 19:45:34] Probing /cvmfs/atlas-condb.cern.ch... OK [2023-04-25 19:45:34] Running cvmfs_config stat atlas.cern.ch [2023-04-25 19:45:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2023-04-25 19:45:36] 2.9.2.0 2164 15 36276 118284 0 70 2361805 4194304 271 130560 0 30127 99.994 895 719 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1 [2023-04-25 19:45:36] CVMFS is ok [2023-04-25 19:45:36] Efficiency of ATLAS tasks can be improved by the following measure(s): [2023-04-25 19:45:36] Small home clusters do not require a local http proxy but it is suggested if [2023-04-25 19:45:36] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks. [2023-04-25 19:45:36] Further information can be found at the LHC@home message board. [2023-04-25 19:45:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2023-04-25 19:45:36] Checking for apptainer binary... [2023-04-25 19:45:36] apptainer is not installed, using version from CVMFS [2023-04-25 19:45:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2023-04-25 19:45:41] 2700x [2023-04-25 19:45:41] apptainer works [2023-04-25 19:45:41] Starting ATLAS job with PandaID=5831456919 [2023-04-25 19:45:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2023-04-25 20:34:22] *** The last 200 lines of the pilot log: *** [2023-04-25 20:34:22] x86-64-v3 [2023-04-25 20:34:22] 2023-04-26 00:33:59,475 | DEBUG | pilot.user.atlas.utilities | get_cpu_arch | CPU arch script returned: x86-64-v3 [2023-04-25 20:34:22] 2023-04-26 00:33:59,475 | DEBUG | pilot.control.job | get_data_structure | cpu arch=x86-64-v3 [2023-04-25 20:34:22] 2023-04-26 00:33:59,475 | INFO | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-5831456919/memory_monitor_summary.json (trf na [2023-04-25 20:34:22] 2023-04-26 00:33:59,476 | DEBUG | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Avg': {'nprocs': 5.142, 'nthreads': 5.821, 'pss': 927102.0, 'rchar': 34940045.0 [2023-04-25 20:34:22] 2023-04-26 00:33:59,476 | INFO | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json [2023-04-25 20:34:22] 2023-04-26 00:33:59,476 | INFO | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | .............................. [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | . Timing measurements: [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | . get job = 41 s [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | . initial setup = 59 s [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | . payload setup = 165 s [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | . stage-in = 63 s [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | . payload execution = 1757 s [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | . stage-out = 363 s [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | INFO | pilot.util.timing | timing_report | .............................. [2023-04-25 20:34:22] 2023-04-26 00:33:59,477 | DEBUG | pilot.control.job | send_state | data={'jobId': '5831456919', 'state': 'finished', 'timestamp': '2023-04-25T20:32:18-05:00', 'siteNam [2023-04-25 20:34:22] 2023-04-26 00:33:59,478 | DEBUG | pilot.control.job | write_heartbeat_to_file | heartbeat dictionary: {'jobId': '5831456919', 'state': 'finished', 'timestamp': '2023-04-25T20:32:18 [2023-04-25 20:34:22] 2023-04-26 00:33:59,479 | DEBUG | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file: /var/lib/boinc-client/slots/5/heartbeat.json [2023-04-25 20:34:22] 2023-04-26 00:33:59,962 | INFO | pilot.control.job | make_job_report | [2023-04-25 20:34:22] 2023-04-26 00:33:59,963 | INFO | pilot.control.job | make_job_report | job summary report [2023-04-25 20:34:22] 2023-04-26 00:33:59,963 | INFO | pilot.control.job | make_job_report | -------------------------------------------------- [2023-04-25 20:34:22] 2023-04-26 00:33:59,963 | INFO | pilot.control.job | make_job_report | PanDA job id: 5831456919 [2023-04-25 20:34:22] 2023-04-26 00:33:59,963 | INFO | pilot.control.job | make_job_report | task id: NULL [2023-04-25 20:34:22] 2023-04-26 00:33:59,963 | INFO | pilot.control.job | make_job_report | errors: (none) [2023-04-25 20:34:22] 2023-04-26 00:33:59,963 | INFO | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | pilot state: finished [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | transexitcode: 0 [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | exeerrorcode: 0 [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | exeerrordiag: [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | exitcode: 0 [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | exitmsg: OK [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | cpuconsumptiontime: 819 s [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | nevents: 2 [2023-04-25 20:34:22] 2023-04-26 00:33:59,964 | INFO | pilot.control.job | make_job_report | neventsw: 0 [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | INFO | pilot.control.job | make_job_report | pid: 25742 [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | INFO | pilot.control.job | make_job_report | pgrp: 25742 [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | INFO | pilot.control.job | make_job_report | corecount: 1 [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | INFO | pilot.control.job | make_job_report | event service: False [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | INFO | pilot.control.job | make_job_report | sizes: {0: 2584824, 1: 2585588, 2: 2585787, 13: 2585787, 24: 2585843, 35: 2585871, 46: 2586027, 57: [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | INFO | pilot.control.job | make_job_report | -------------------------------------------------- [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | INFO | pilot.control.job | make_job_report | [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | DEBUG | pilot.control.job | has_job_completed | ls -lF /var/lib/boinc-client/slots/5: [2023-04-25 20:34:22] [2023-04-25 20:34:22] 2023-04-26 00:33:59,965 | INFO | pilot.util.container | print_executable | executing command: ls -lF /var/lib/boinc-client/slots/5 [2023-04-25 20:34:22] 2023-04-26 00:34:00,631 | DEBUG | pilot.control.job | has_job_completed | total 42500 [2023-04-25 20:34:22] -rw------- 1 boinc boinc 128 Apr 25 19:45 0FdNDmNLhB3n7Olcko1bjSoqABFKDmABFKDm7AsVDmFEIKDmPo0c6n.diag [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1017296 Apr 25 19:49 agis_schedconf.cvmfs.json [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 0 Apr 25 19:45 boinc_lockfile [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 8192 Apr 25 20:33 boinc_mmap_file [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 534 Apr 25 20:26 boinc_task_state.xml [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1450330 Apr 25 19:49 cric_ddmendpoints.json [2023-04-25 20:34:22] -rw------- 1 boinc boinc 353813 Apr 25 20:33 dd591d70-4d00-49f6-966d-4e37d1c6cec2_26032.1.job.log [2023-04-25 20:34:22] -rw------- 1 boinc boinc 179870 Apr 25 20:29 dd591d70-4d00-49f6-966d-4e37d1c6cec2_26032.1.job.log.tgz [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 37738636 Apr 25 19:45 EVNT.04972714._000024.pool.root.1 [2023-04-25 20:34:22] -rw------- 1 boinc boinc 8014 Apr 25 20:33 heartbeat.json [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 9173 Apr 25 19:45 init_data.xml [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 423959 Apr 25 19:45 input.tar.gz [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 112 Apr 25 19:45 job.xml [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1017 Apr 25 20:26 memory_monitor_summary.json [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1410889 Apr 25 20:25 output.1.dd591d70-4d00-49f6-966d-4e37d1c6cec2_26032.pool.root [2023-04-25 20:34:22] -rw------- 1 boinc boinc 464 Apr 25 20:32 output.list [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 2663 Apr 25 19:45 pandaJob.out [2023-04-25 20:34:22] drwxrwx--- 2 boinc boinc 4096 Apr 25 20:32 PanDA_Pilot-5831456919/ [2023-04-25 20:34:22] drwx------ 4 boinc boinc 4096 Apr 25 19:49 pilot3/ [2023-04-25 20:34:22] -rw------- 1 boinc boinc 412460 Apr 25 19:33 pilot3.tar.gz [2023-04-25 20:34:22] -rw------- 1 boinc boinc 341409 Apr 25 20:33 pilotlog.txt [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 4388 Apr 25 19:31 queuedata.json [2023-04-25 20:34:22] -rwxr-xr-x 1 boinc boinc 7986 Apr 25 19:45 run_atlas* [2023-04-25 20:34:22] -rwx------ 1 boinc boinc 27540 Apr 25 19:33 runpilot2-wrapper.sh* [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 407 Apr 25 19:45 runtime_log [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 7825 Apr 25 19:45 runtime_log.err [2023-04-25 20:34:22] -rw------- 1 boinc boinc 424 Apr 25 19:45 setup.sh.local [2023-04-25 20:34:22] drwxrwx--x 2 boinc boinc 4096 Apr 25 19:45 shared/ [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 17632 Apr 25 19:45 start_atlas.sh [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 2033 Apr 25 19:45 stderr.txt [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 107 Apr 25 19:45 wrapper_26015_x86_64-pc-linux-gnu [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 25 Apr 25 20:33 wrapper_checkpoint.txt [2023-04-25 20:34:22] 2023-04-26 00:34:00,632 | INFO | pilot.util.queuehandling | queue_report | queue jobs had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,632 | INFO | pilot.util.queuehandling | queue_report | queue payloads had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,632 | INFO | pilot.util.queuehandling | queue_report | queue data_in had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,632 | INFO | pilot.util.queuehandling | queue_report | queue data_out had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,632 | INFO | pilot.util.queuehandling | queue_report | queue current_data_in had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,632 | INFO | pilot.util.queuehandling | queue_report | queue validated_jobs had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,632 | INFO | pilot.util.queuehandling | queue_report | queue validated_payloads had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue monitored_payloads had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue finished_jobs had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue finished_payloads had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_in had 1 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_out had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue failed_jobs had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue failed_payloads had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_in had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_out had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobs had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s) [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue realtimelog_payloads had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.util.queuehandling | queue_report | queue messages had 0 job(s) [purged] [2023-04-25 20:34:22] 2023-04-26 00:34:00,633 | INFO | pilot.control.job | has_job_completed | job 5831456919 has completed (purged errors) [2023-04-25 20:34:22] 2023-04-26 00:34:00,634 | DEBUG | pilot.util.realtimelogger | cleanup | attempting real-time logger cleanup [2023-04-25 20:34:22] 2023-04-26 00:34:00,634 | INFO | pilot.util.processes | cleanup | overall cleanup function is called [2023-04-25 20:34:22] 2023-04-26 00:34:00,647 | DEBUG | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/5/PanDA_Pilot-5831456919 [2023-04-25 20:34:22] 2023-04-26 00:34:01,655 | INFO | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [25742] [2023-04-25 20:34:22] 2023-04-26 00:34:01,656 | INFO | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 25742 [2023-04-25 20:34:22] 2023-04-26 00:34:01,656 | INFO | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes [2023-04-25 20:34:22] 2023-04-26 00:34:02,663 | INFO | pilot.util.processes | cleanup | collected zombie processes [2023-04-25 20:34:22] 2023-04-26 00:34:02,663 | INFO | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=25742 [2023-04-25 20:34:22] 2023-04-26 00:34:03,156 | INFO | pilot.util.processes | kill_processes | process IDs to be killed: [25742] (in reverse order) [2023-04-25 20:34:22] 2023-04-26 00:34:04,137 | WARNING | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) [2023-04-25 20:34:22] 2023-04-26 00:34:04,138 | INFO | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs [2023-04-25 20:34:22] 2023-04-26 00:34:04,138 | DEBUG | pilot.util.queuehandling | purge_queue | queue purged [2023-04-25 20:34:22] 2023-04-26 00:34:04,138 | INFO | pilot.control.job | retrieve | ready for new job [2023-04-25 20:34:22] 2023-04-26 00:34:04,138 | INFO | root | retrieve | pilot has finished with previous job - re-establishing logging [2023-04-25 20:34:22] 2023-04-26 00:34:04,140 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-04-25 20:34:22] 2023-04-26 00:34:04,140 | INFO | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 3.6.0 (66) *** [2023-04-25 20:34:22] 2023-04-26 00:34:04,140 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-04-25 20:34:22] 2023-04-26 00:34:04,140 | INFO | pilot.util.auxiliary | pilot_version_banner | [2023-04-25 20:34:22] 2023-04-26 00:34:04,164 | INFO | pilot.util.auxiliary | display_architecture_info | architecture information: [2023-04-25 20:34:22] 2023-04-26 00:34:04,175 | INFO | pilot.util.container | print_executable | executing command: cat /etc/os-release [2023-04-25 20:34:22] 2023-04-26 00:34:04,359 | INFO | pilot.util.filehandling | dump | cat /etc/os-release: [2023-04-25 20:34:22] NAME="CentOS Linux" [2023-04-25 20:34:22] VERSION="7 (Core)" [2023-04-25 20:34:22] ID="centos" [2023-04-25 20:34:22] ID_LIKE="rhel fedora" [2023-04-25 20:34:22] VERSION_ID="7" [2023-04-25 20:34:22] PRETTY_NAME="CentOS Linux 7 (Core)" [2023-04-25 20:34:22] ANSI_COLOR="0;31" [2023-04-25 20:34:22] CPE_NAME="cpe:/o:centos:centos:7" [2023-04-25 20:34:22] HOME_URL="https://www.centos.org/" [2023-04-25 20:34:22] BUG_REPORT_URL="https://bugs.centos.org/" [2023-04-25 20:34:22] [2023-04-25 20:34:22] CENTOS_MANTISBT_PROJECT="CentOS-7" [2023-04-25 20:34:22] CENTOS_MANTISBT_PROJECT_VERSION="7" [2023-04-25 20:34:22] REDHAT_SUPPORT_PRODUCT="centos" [2023-04-25 20:34:22] REDHAT_SUPPORT_PRODUCT_VERSION="7" [2023-04-25 20:34:22] [2023-04-25 20:34:22] 2023-04-26 00:34:04,360 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-04-25 20:34:22] 2023-04-26 00:34:04,863 | DEBUG | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/5 [2023-04-25 20:34:22] 2023-04-26 00:34:04,863 | INFO | pilot.util.container | print_executable | executing command: df -mP /var/lib/boinc-client/slots/5 [2023-04-25 20:34:22] 2023-04-26 00:34:05,208 | DEBUG | pilot.util.workernode | get_local_disk_space | stdout=Filesystem 1048576-blocks Used Available Capacity Mounted on [2023-04-25 20:34:22] /dev/nvme0n1p2 479119 163421 291290 36% /var/lib/boinc-client/slots/5 [2023-04-25 20:34:22] 2023-04-26 00:34:05,208 | DEBUG | pilot.util.workernode | get_local_disk_space | stderr= [2023-04-25 20:34:22] 2023-04-26 00:34:05,208 | INFO | pilot.util.monitoring | check_local_space | sufficient remaining disk space (305439703040 B) [2023-04-25 20:34:22] 2023-04-26 00:34:05,208 | WARNING | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job [2023-04-25 20:34:22] 2023-04-26 00:34:05,211 | DEBUG | pilot.control.job | retrieve | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:05,211 | INFO | pilot.control.job | retrieve | [job] retrieve thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:05,212 | WARNING | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration [2023-04-25 20:34:22] 2023-04-26 00:34:05,215 | WARNING | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration [2023-04-25 20:34:22] 2023-04-26 00:34:05,216 | DEBUG | pilot.control.job | queue_monitor | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:05,216 | INFO | pilot.control.job | queue_monitor | [job] queue monitor thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:05,219 | WARNING | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration [2023-04-25 20:34:22] 2023-04-26 00:34:05,463 | DEBUG | pilot.control.payload | control | payload control ending since graceful_stop has been set [2023-04-25 20:34:22] 2023-04-26 00:34:05,464 | DEBUG | pilot.control.payload | control | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:05,464 | INFO | pilot.control.payload | control | [payload] control thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:05,659 | DEBUG | pilot.control.job | validate | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:05,659 | INFO | pilot.control.job | validate | [job] validate thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:05,687 | DEBUG | pilot.control.payload | validate_post | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:05,687 | INFO | pilot.control.payload | validate_post | [payload] validate_post thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:05,704 | INFO | pilot.control.monitor | control | [monitor] control thread has ended [2023-04-25 20:34:22] 2023-04-26 00:34:05,859 | DEBUG | pilot.control.data | control | data control ending since graceful_stop has been set [2023-04-25 20:34:22] 2023-04-26 00:34:05,860 | DEBUG | pilot.control.data | control | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:05,860 | INFO | pilot.control.data | control | [data] control thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:06,147 | DEBUG | pilot.control.job | control | job control ending since graceful_stop has been set [2023-04-25 20:34:22] 2023-04-26 00:34:06,148 | DEBUG | pilot.control.job | control | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:06,148 | INFO | pilot.control.job | control | [job] control thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:06,183 | DEBUG | pilot.control.payload | validate_pre | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:06,184 | INFO | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:06,220 | DEBUG | pilot.control.data | copytool_out | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:06,220 | INFO | pilot.control.data | copytool_out | [data] copytool_out thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:06,595 | DEBUG | pilot.control.payload | execute_payloads | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:06,596 | INFO | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:06,599 | DEBUG | pilot.control.data | copytool_in | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:06,599 | INFO | pilot.control.data | copytool_in | [data] copytool_in thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:06,659 | DEBUG | pilot.control.payload | failed_post | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:06,660 | INFO | pilot.control.payload | failed_post | [payload] failed_post thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:06,675 | DEBUG | pilot.control.job | create_data_payload | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:06,676 | INFO | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:08,219 | DEBUG | pilot.control.data | queue_monitoring | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:08,220 | INFO | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:15,767 | INFO | pilot.control.payload | get_logging_info | job.realtimelogging is not enabled [2023-04-25 20:34:22] 2023-04-26 00:34:15,768 | DEBUG | pilot.control.payload | run_realtimelog | real-time logging not needed at this point [2023-04-25 20:34:22] 2023-04-26 00:34:15,768 | DEBUG | pilot.control.payload | run_realtimelog | realtime logger was not found, waiting .. [2023-04-25 20:34:22] 2023-04-26 00:34:15,768 | DEBUG | pilot.control.payload | run_realtimelog | will not set job_aborted yet [2023-04-25 20:34:22] 2023-04-26 00:34:15,768 | INFO | pilot.control.payload | run_realtimelog | [payload] run_realtimelog thread has finished [2023-04-25 20:34:22] 2023-04-26 00:34:16,223 | DEBUG | pilot.util.processes | threads_aborted | aborting since only the main Pilot thread is still running (total thread count=1 with 0 daemon threa [2023-04-25 20:34:22] 2023-04-26 00:34:16,223 | DEBUG | pilot.workflow.generic | run | all relevant threads have aborted (thread count=1) [2023-04-25 20:34:22] 2023-04-26 00:34:16,223 | INFO | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) [2023-04-25 20:34:22] 2023-04-26 00:34:16,224 | INFO | root | wrap_up | traces error code: 0 [2023-04-25 20:34:22] 2023-04-26 00:34:16,224 | INFO | root | wrap_up | pilot has finished (exit code=0, shell exit code=0) [2023-04-25 20:34:22] 2023-04-26 00:34:16,611 [wrapper] ==== pilot stdout END ==== [2023-04-25 20:34:22] 2023-04-26 00:34:16,747 [wrapper] ==== wrapper stdout RESUME ==== [2023-04-25 20:34:22] 2023-04-26 00:34:16,875 [wrapper] pilotpid: 17900 [2023-04-25 20:34:22] 2023-04-26 00:34:16,976 [wrapper] Pilot exit status: 0 [2023-04-25 20:34:22] 2023-04-26 00:34:17,323 [wrapper] pandaids: 5831456919 [2023-04-25 20:34:22] 2023-04-26 00:34:17,532 [wrapper] apfmon messages muted [2023-04-25 20:34:22] 2023-04-26 00:34:17,612 [wrapper] Test setup, not cleaning [2023-04-25 20:34:22] 2023-04-26 00:34:17,707 [wrapper] ==== wrapper stdout END ==== [2023-04-25 20:34:22] 2023-04-26 00:34:17,801 [wrapper] ==== wrapper stderr END ==== [2023-04-25 20:34:22] 2023-04-26 00:34:18,047 [wrapper] wrapperexiting ec=0, duration=2910 [2023-04-25 20:34:22] 2023-04-26 00:34:18,167 [wrapper] apfmon messages muted [2023-04-25 20:34:22] *** Error codes and diagnostics *** [2023-04-25 20:34:22] "exeErrorCode": 0, [2023-04-25 20:34:22] "exeErrorDiag": "", [2023-04-25 20:34:22] "pilotErrorCode": 0, [2023-04-25 20:34:22] "pilotErrorDiag": "", [2023-04-25 20:34:22] *** Listing of results directory *** [2023-04-25 20:34:22] total 44148 [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 4388 Apr 25 19:31 queuedata.json [2023-04-25 20:34:22] -rwx------ 1 boinc boinc 27540 Apr 25 19:33 runpilot2-wrapper.sh [2023-04-25 20:34:22] -rw------- 1 boinc boinc 412460 Apr 25 19:33 pilot3.tar.gz [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 107 Apr 25 19:45 wrapper_26015_x86_64-pc-linux-gnu [2023-04-25 20:34:22] -rwxr-xr-x 1 boinc boinc 7986 Apr 25 19:45 run_atlas [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 112 Apr 25 19:45 job.xml [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 9173 Apr 25 19:45 init_data.xml [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 37738636 Apr 25 19:45 EVNT.04972714._000024.pool.root.1 [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 17632 Apr 25 19:45 start_atlas.sh [2023-04-25 20:34:22] drwxrwx--x 2 boinc boinc 4096 Apr 25 19:45 shared [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 423959 Apr 25 19:45 input.tar.gz [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 0 Apr 25 19:45 boinc_lockfile [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 2663 Apr 25 19:45 pandaJob.out [2023-04-25 20:34:22] -rw------- 1 boinc boinc 424 Apr 25 19:45 setup.sh.local [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1450330 Apr 25 19:49 cric_ddmendpoints.json [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1017296 Apr 25 19:49 agis_schedconf.cvmfs.json [2023-04-25 20:34:22] drwx------ 4 boinc boinc 4096 Apr 25 19:49 pilot3 [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1410889 Apr 25 20:25 output.1.dd591d70-4d00-49f6-966d-4e37d1c6cec2_26032.pool.root [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 534 Apr 25 20:26 boinc_task_state.xml [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1017 Apr 25 20:26 memory_monitor_summary.json [2023-04-25 20:34:22] -rw------- 1 boinc boinc 179870 Apr 25 20:29 dd591d70-4d00-49f6-966d-4e37d1c6cec2_26032.1.job.log.tgz [2023-04-25 20:34:22] -rw------- 1 boinc boinc 8014 Apr 25 20:33 heartbeat.json [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 8192 Apr 25 20:34 boinc_mmap_file [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 25 Apr 25 20:34 wrapper_checkpoint.txt [2023-04-25 20:34:22] -rw------- 1 boinc boinc 8784 Apr 25 20:34 pilotlog.txt [2023-04-25 20:34:22] -rw------- 1 boinc boinc 370592 Apr 25 20:34 dd591d70-4d00-49f6-966d-4e37d1c6cec2_26032.1.job.log [2023-04-25 20:34:22] -rw------- 1 boinc boinc 464 Apr 25 20:34 output.list [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 748 Apr 25 20:34 runtime_log [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1976320 Apr 25 20:34 result.tar.gz [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 11940 Apr 25 20:34 runtime_log.err [2023-04-25 20:34:22] -rw------- 1 boinc boinc 632 Apr 25 20:34 0FdNDmNLhB3n7Olcko1bjSoqABFKDmABFKDm7AsVDmFEIKDmPo0c6n.diag [2023-04-25 20:34:22] -rw-r--r-- 1 boinc boinc 29328 Apr 25 20:34 stderr.txt [2023-04-25 20:34:22] HITS file was successfully produced: [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1410889 Apr 25 20:25 shared/HITS.pool.root.1 [2023-04-25 20:34:22] *** Contents of shared directory: *** [2023-04-25 20:34:22] total 40608 [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 37738636 Apr 25 19:45 ATLAS.root_0 [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 17632 Apr 25 19:45 start_atlas.sh [2023-04-25 20:34:22] -rw-r--r-- 2 boinc boinc 423959 Apr 25 19:45 input.tar.gz [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1410889 Apr 25 20:25 HITS.pool.root.1 [2023-04-25 20:34:22] -rw------- 1 boinc boinc 1976320 Apr 25 20:34 result.tar.gz 20:34:24 (14566): run_atlas exited; CPU time 820.012235 20:34:24 (14566): called boinc_finish(0) </stderr_txt> ]]>
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