Name txSKDmKWED3n7Olcko1bjSoqABFKDmABFKDm7AsVDmxVIKDmMuPf6m_1
Workunit 2303674
Created 30 Apr 2023, 5:46:48 UTC
Sent 30 Apr 2023, 6:11:41 UTC
Report deadline 7 May 2023, 6:11:41 UTC
Received 30 Apr 2023, 6:48:06 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 5012
Run time 34 min 56 sec
CPU time 4 min 4 sec
Validate state Valid
Credit 38.40
Device peak FLOPS 8.12 GFLOPS
Application version ATLAS Simulation v3.01 (vbox64_mt_mcore_atlas)
x86_64-pc-linux-gnu
Peak working set size 479.00 MB
Peak swap size 5.56 GB
Peak disk usage 1,013.45 MB

Stderr output

<core_client_version>7.16.16</core_client_version>
<![CDATA[
<stderr_txt>
2023-04-30 08:11:27 (202389): Detected: vboxwrapper 26206
2023-04-30 08:11:27 (202389): Detected: BOINC client v7.16.16
2023-04-30 08:11:27 (202389): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2023-04-30 08:11:27 (202389): Successfully copied 'init_data.xml' to the shared directory.
2023-04-30 08:11:27 (202389): Create VM. (boinc_af185c7664573dfa, slot#21)
2023-04-30 08:11:27 (202389): Setting Memory Size for VM. (4100MB)
2023-04-30 08:11:27 (202389): Setting CPU Count for VM. (1)
2023-04-30 08:11:27 (202389): Setting Chipset Options for VM.
2023-04-30 08:11:27 (202389): Setting Graphics Controller Options for VM.
2023-04-30 08:11:28 (202389): Setting Boot Options for VM.
2023-04-30 08:11:28 (202389): Setting Network Configuration for NAT.
2023-04-30 08:11:28 (202389): Enabling VM Network Access.
2023-04-30 08:11:28 (202389): Disabling USB Support for VM.
2023-04-30 08:11:28 (202389): Disabling COM Port Support for VM.
2023-04-30 08:11:28 (202389): Disabling LPT Port Support for VM.
2023-04-30 08:11:28 (202389): Disabling Audio Support for VM.
2023-04-30 08:11:28 (202389): Disabling Clipboard Support for VM.
2023-04-30 08:11:28 (202389): Disabling Drag and Drop Support for VM.
2023-04-30 08:11:28 (202389): Adding storage controller(s) to VM.
2023-04-30 08:11:28 (202389): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-04-30 08:11:28 (202389): Adding VirtualBox Guest Additions to VM.
2023-04-30 08:11:28 (202389): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-04-30 08:11:28 (202389): forwarding host port 48535 to guest port 80
2023-04-30 08:11:28 (202389): Enabling remote desktop for VM.
2023-04-30 08:11:28 (202389): Enabling shared directory for VM.
2023-04-30 08:11:29 (202389): Starting VM using VBoxManage interface. (boinc_af185c7664573dfa, slot#21)
2023-04-30 08:11:30 (202389): Successfully started VM. (PID = '202790')
2023-04-30 08:11:30 (202389): Reporting VM Process ID to BOINC.
2023-04-30 08:11:30 (202389): Guest Log: BIOS: VirtualBox 6.1.40
2023-04-30 08:11:30 (202389): Guest Log: CPUID EDX: 0x178bfbff
2023-04-30 08:11:30 (202389): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-04-30 08:11:30 (202389): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-04-30 08:11:30 (202389): VM state change detected. (old = 'poweredoff', new = 'running')
2023-04-30 08:11:30 (202389): Detected: Web Application Enabled (http://localhost:48535)
2023-04-30 08:11:30 (202389): Detected: Remote Desktop Enabled (localhost:59541)
2023-04-30 08:11:30 (202389): Preference change detected
2023-04-30 08:11:30 (202389): Setting CPU throttle for VM. (100%)
2023-04-30 08:11:30 (202389): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2023-04-30 08:11:32 (202389): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-04-30 08:11:32 (202389): Guest Log: BIOS: Booting from Hard Disk...
2023-04-30 08:11:35 (202389): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-04-30 08:11:35 (202389): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-04-30 08:11:35 (202389): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-04-30 08:11:39 (202389): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-04-30 08:11:39 (202389): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-04-30 08:11:50 (202389): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-04-30 08:11:50 (202389): Guest Log: 00:00:00.000194 main     Log opened 2023-04-30T06:11:48.794678000Z
2023-04-30 08:11:50 (202389): Guest Log: 00:00:00.000306 main     OS Product: Linux
2023-04-30 08:11:50 (202389): Guest Log: 00:00:00.000335 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-04-30 08:11:50 (202389): Guest Log: 00:00:00.000357 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-04-30 08:11:50 (202389): Guest Log: 00:00:00.000379 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-04-30 08:11:50 (202389): Guest Log: 00:00:00.000379 main     Process ID: 1251
2023-04-30 08:11:50 (202389): Guest Log: 00:00:00.000380 main     Package type: LINUX_64BITS_GENERIC
2023-04-30 08:11:50 (202389): Guest Log: 00:00:00.001742 main     5.2.32 r132073 started. Verbose level = 0
2023-04-30 08:11:50 (202389): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-04-30 08:11:50 (202389): Guest Log: [INFO] Mounting shared directory
2023-04-30 08:11:50 (202389): Guest Log: [INFO] Checking for init_data.xml
2023-04-30 08:11:53 (202389): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-04-30 08:11:53 (202389): Guest Log: [INFO] Detected branch: dev
2023-04-30 08:11:53 (202389): Guest Log: This is the dev version of the ATLAS job wrapper
2023-04-30 08:11:53 (202389): Guest Log: Copying input files
2023-04-30 08:11:54 (202389): Guest Log: Copied input files into RunAtlas.
2023-04-30 08:11:54 (202389): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-04-30 08:11:54 (202389): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-04-30 08:11:54 (202389): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-04-30 08:11:54 (202389): Guest Log: Further information can be found at the LHC@home message board.
2023-04-30 08:12:02 (202389): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-04-30 08:12:03 (202389): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-04-30 08:12:03 (202389): Guest Log: 2.6.3.0 1520 0 32176 118450 4 1 3116371 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2023-04-30 08:12:03 (202389): Guest Log: copied the webapp to /var/www
2023-04-30 08:12:04 (202389): Guest Log: core_number=1
2023-04-30 08:12:04 (202389): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-04-30 08:12:04 (202389): Guest Log:  *** Starting ATLAS job. (PandaID=5835742340 taskID=NULL&cor) ***
2023-04-30 08:46:17 (202389): Guest Log:  *** Job finished ***
2023-04-30 08:46:17 (202389): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-04-30 08:46:17 (202389): Guest Log:  *** Error codes and diagnostics ***
2023-04-30 08:46:17 (202389): Guest Log:     "exeErrorCode": 65,
2023-04-30 08:46:17 (202389): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2023-04-30 08:46:17 (202389): Guest Log:     "pilotErrorCode": 1305,
2023-04-30 08:46:17 (202389): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-04-30 06:39:22,583 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
2023-04-30 08:46:17 (202389): Guest Log:  *** Listing of results directory ***
2023-04-30 08:46:17 (202389): Guest Log: total 3676
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 atlas atlas  393247 Apr 30 04:35 pilot3.tar.gz
2023-04-30 08:46:17 (202389): Guest Log: -rwx------. 1 atlas atlas   27542 Apr 30 05:11 runpilot2-wrapper.sh
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 atlas atlas    4388 Apr 30 05:11 queuedata.json
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 atlas atlas  403671 Apr 30 06:11 input.tar.gz
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 atlas atlas    9577 Apr 30 06:11 init_data.xml
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 atlas atlas   17600 Apr 30 06:11 start_atlas.sh
2023-04-30 08:46:17 (202389): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 30 06:11 EVNT.04972714._000029.pool.root.1 -> /data/./ATLAS.root_0
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 atlas atlas    2750 Apr 30 06:12 pandaJob.out
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas     424 Apr 30 06:12 setup.sh.local
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas 1013360 Apr 30 06:20 agis_schedconf.cvmfs.json
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas 1446236 Apr 30 06:21 cric_ddmendpoints.json
2023-04-30 08:46:17 (202389): Guest Log: drwx------. 4 atlas atlas     284 Apr 30 06:21 pilot3
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas    1015 Apr 30 06:39 memory_monitor_summary.json
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas   77087 Apr 30 06:39 c612a104-9f72-4982-a685-33903bf53c2e_8507.1.job.log.tgz
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas    8156 Apr 30 06:45 heartbeat.json
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas    2930 Apr 30 06:46 pilotlog.txt
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas  102366 Apr 30 06:46 c612a104-9f72-4982-a685-33903bf53c2e_8507.1.job.log
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas     225 Apr 30 06:46 output.list
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 atlas atlas     683 Apr 30 06:46 runtime_log
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas  194560 Apr 30 06:46 result.tar.gz
2023-04-30 08:46:17 (202389): Guest Log: -rw-------. 1 atlas atlas     627 Apr 30 06:46 txSKDmKWED3n7Olcko1bjSoqABFKDmABFKDm7AsVDmxVIKDmMuPf6m.diag
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 atlas atlas   11180 Apr 30 06:46 runtime_log.err
2023-04-30 08:46:17 (202389): Guest Log: Looking for outputfile output.1.c612a104-9f72-4982-a685-33903bf53c2e_8507.pool.root
2023-04-30 08:46:17 (202389): Guest Log: No HITS file was produced
2023-04-30 08:46:17 (202389): Guest Log: Successfully finished the ATLAS job!
2023-04-30 08:46:17 (202389): Guest Log: Copying the results back to the shared directory!
2023-04-30 08:46:17 (202389): Guest Log:  *** Contents of shared directory: ***
2023-04-30 08:46:17 (202389): Guest Log: total 37396
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 root root 37658468 Apr 30 06:11 ATLAS.root_0
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 root root     9577 Apr 30 06:11 init_data.xml
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 root root   403671 Apr 30 06:11 input.tar.gz
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 root root   194560 Apr 30 06:46 result.tar.gz
2023-04-30 08:46:17 (202389): Guest Log: -rw-r--r--. 1 root root    17600 Apr 30 06:11 start_atlas.sh
2023-04-30 08:46:17 (202389): Guest Log:  *** Success! Shutting down the machine. ***
2023-04-30 08:46:17 (202389): VM Completion File Detected.
2023-04-30 08:46:17 (202389): Powering off VM.
2023-04-30 08:46:17 (202389): Successfully stopped VM.
2023-04-30 08:46:17 (202389): Deregistering VM. (boinc_af185c7664573dfa, slot#21)
2023-04-30 08:46:17 (202389): Removing network bandwidth throttle group from VM.
2023-04-30 08:46:17 (202389): Removing VM from VirtualBox.
08:46:22 (202389): called boinc_finish(0)

</stderr_txt>
]]>


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