Name tPhKDmnvgD3n7Olcko1bjSoqABFKDmABFKDm7AsVDmecIKDmwfKYVm_2
Workunit 2303981
Created 1 May 2023, 12:37:07 UTC
Sent 1 May 2023, 12:39:20 UTC
Report deadline 8 May 2023, 12:39:20 UTC
Received 1 May 2023, 13:03:50 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4852
Run time 17 min 44 sec
CPU time 9 min 36 sec
Validate state Valid
Credit 12.01
Device peak FLOPS 9.86 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.52 GB
Peak swap size 11.49 GB
Peak disk usage 80.58 MB

Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
14:39:29 (2826881): wrapper (7.7.26015): starting
14:39:29 (2826881): wrapper: running run_atlas (--nthreads 2)
[2023-05-01 14:39:29] Arguments: --nthreads 2
[2023-05-01 14:39:29] Threads: 2
[2023-05-01 14:39:29] Checking for CVMFS
[2023-05-01 14:39:29] Probing /cvmfs/atlas.cern.ch... OK
[2023-05-01 14:39:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-05-01 14:39:30] Running cvmfs_config stat atlas.cern.ch
[2023-05-01 14:39:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-05-01 14:39:30] 2.10.0.0 2827028 0 22840 118494 3 1 8273507 10240000 0 130560 0 0 0.000 823 6051 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2023-05-01 14:39:30] CVMFS is ok
[2023-05-01 14:39:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-05-01 14:39:30] Checking for apptainer binary...
[2023-05-01 14:39:30] Using apptainer found in PATH at /usr/bin/apptainer
[2023-05-01 14:39:30] Running /usr/bin/apptainer --version
[2023-05-01 14:39:30] apptainer version 1.1.0-rc.2
[2023-05-01 14:39:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-05-01 14:39:30] atlas7l1
[2023-05-01 14:39:30] apptainer works
[2023-05-01 14:39:30] Set ATHENA_PROC_NUMBER=2
[2023-05-01 14:39:30] Set ATHENA_CORE_NUMBER=2
[2023-05-01 14:39:30] Starting ATLAS job with PandaID=5836572472
[2023-05-01 14:39:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-05-01 14:57:10]  *** The last 200 lines of the pilot log: ***
[2023-05-01 14:57:10] 2023-05-01 12:56:39,327 | INFO     | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from prmon json
[2023-05-01 14:57:10] 2023-05-01 12:56:39,327 | INFO     | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from prmon json
[2023-05-01 14:57:10] 2023-05-01 12:56:39,327 | INFO     | pilot.util.timing                | timing_report             | ..............................
[2023-05-01 14:57:10] 2023-05-01 12:56:39,327 | INFO     | pilot.util.timing                | timing_report             | . Timing measurements:
[2023-05-01 14:57:10] 2023-05-01 12:56:39,327 | INFO     | pilot.util.timing                | timing_report             | . get job = 62 s
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | INFO     | pilot.util.timing                | timing_report             | . initial setup = 63 s
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | INFO     | pilot.util.timing                | timing_report             | . payload setup = 7 s
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | INFO     | pilot.util.timing                | timing_report             | . stage-in = 53 s
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | INFO     | pilot.util.timing                | timing_report             | . payload execution = 469 s
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | INFO     | pilot.util.timing                | timing_report             | . stage-out = 337 s
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | INFO     | pilot.util.timing                | timing_report             | ..............................
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | DEBUG    | pilot.control.job                | send_state                | data={'jobId': '5836572472', 'state': 'finished', 'timestamp': '2023-05-01T14:56:34+01:00', 'siteNam
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | DEBUG    | pilot.control.job                | write_heartbeat_to_file   | heartbeat dictionary: {'jobId': '5836572472', 'state': 'finished', 'timestamp': '2023-05-01T14:56:34
[2023-05-01 14:57:10] 2023-05-01 12:56:39,328 | DEBUG    | pilot.control.job                | write_heartbeat_to_file   | wrote heartbeat to file: /var/lib/boinc_data/boinc-01/slots/5/heartbeat.json
[2023-05-01 14:57:10] 2023-05-01 12:56:39,379 | INFO     | pilot.control.job                | make_job_report           | 
[2023-05-01 14:57:10] 2023-05-01 12:56:39,379 | INFO     | pilot.control.job                | make_job_report           | job summary report
[2023-05-01 14:57:10] 2023-05-01 12:56:39,379 | INFO     | pilot.control.job                | make_job_report           | --------------------------------------------------
[2023-05-01 14:57:10] 2023-05-01 12:56:39,379 | INFO     | pilot.control.job                | make_job_report           | PanDA job id: 5836572472
[2023-05-01 14:57:10] 2023-05-01 12:56:39,379 | INFO     | pilot.control.job                | make_job_report           | task id: NULL
[2023-05-01 14:57:10] 2023-05-01 12:56:39,379 | INFO     | pilot.control.job                | make_job_report           | errors: (none)
[2023-05-01 14:57:10] 2023-05-01 12:56:39,379 | INFO     | pilot.control.job                | make_job_report           | status: LOG_TRANSFER = DONE 
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | pilot state: finished 
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | transexitcode: 0
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | exeerrorcode: 0
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | exeerrordiag: 
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | exitcode: 0
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | exitmsg: OK
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | cpuconsumptiontime: 581 s
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | nevents: 2
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | neventsw: 0
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | pid: 2841056
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | pgrp: 2841056
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | corecount: 2
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | event service: False
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | sizes: {0: 2578863, 1: 2578863, 11: 2579037, 22: 2579065, 32: 2579093, 43: 2579121, 54: 2579277, 58:
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | --------------------------------------------------
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.control.job                | make_job_report           | 
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | DEBUG    | pilot.control.job                | has_job_completed         | ls -lF /var/lib/boinc_data/boinc-01/slots/5:
[2023-05-01 14:57:10] 
[2023-05-01 14:57:10] 2023-05-01 12:56:39,380 | INFO     | pilot.util.container             | print_executable          | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/5
[2023-05-01 14:57:10] 2023-05-01 12:56:39,390 | DEBUG    | pilot.control.job                | has_job_completed         | total 44068
[2023-05-01 14:57:10] -rw------- 1 yeti yeti   230409 May  1 14:56 66e55af7-8edd-46a1-9830-65f1a4da323c_21178.1.job.log
[2023-05-01 14:57:10] -rw------- 1 yeti yeti   430271 May  1 14:54 66e55af7-8edd-46a1-9830-65f1a4da323c_21178.1.job.log.tgz
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti 38217911 May  1 14:39 EVNT.04972714._000030.pool.root.1
[2023-05-01 14:57:10] drwxrwx--- 3 yeti yeti     4096 May  1 14:56 PanDA_Pilot-5836572472/
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  1013741 May  1 14:40 agis_schedconf.cvmfs.json
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti        0 May  1 14:39 boinc_lockfile
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti     8192 May  1 14:56 boinc_mmap_file
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti      533 May  1 14:49 boinc_task_state.xml
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  1446236 May  1 14:40 cric_ddmendpoints.json
[2023-05-01 14:57:10] -rw------- 1 yeti yeti     7771 May  1 14:56 heartbeat.json
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti     6434 May  1 14:39 init_data.xml
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti   425360 May  1 14:39 input.tar.gz
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti      112 May  1 14:39 job.xml
[2023-05-01 14:57:10] -rw------- 1 yeti yeti     1006 May  1 14:50 memory_monitor_summary.json
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  2545412 May  1 14:50 output.1.66e55af7-8edd-46a1-9830-65f1a4da323c_21178.pool.root
[2023-05-01 14:57:10] -rw------- 1 yeti yeti      464 May  1 14:56 output.list
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti     2662 May  1 14:39 pandaJob.out
[2023-05-01 14:57:10] drwx------ 4 yeti yeti     4096 May  1 14:41 pilot3/
[2023-05-01 14:57:10] -rw------- 1 yeti yeti   413524 May  1 13:31 pilot3.tar.gz
[2023-05-01 14:57:10] -rw------- 1 yeti yeti   216735 May  1 14:56 pilotlog.txt
[2023-05-01 14:57:10] -rw-r--r-- 1 yeti yeti     4388 May  1 13:31 queuedata.json
[2023-05-01 14:57:10] -rwxr-xr-x 1 yeti yeti     7986 May  1 14:39 run_atlas*
[2023-05-01 14:57:10] -rwx------ 1 yeti yeti    27540 May  1 13:31 runpilot2-wrapper.sh*
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti      407 May  1 14:39 runtime_log
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti     8344 May  1 14:39 runtime_log.err
[2023-05-01 14:57:10] -rw------- 1 yeti yeti      462 May  1 14:39 setup.sh.local
[2023-05-01 14:57:10] drwxrwx--x 2 yeti yeti     4096 May  1 14:39 shared/
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti    17632 May  1 14:39 start_atlas.sh
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti     1750 May  1 14:39 stderr.txt
[2023-05-01 14:57:10] -rw------- 1 yeti yeti      144 May  1 14:39 tPhKDmnvgD3n7Olcko1bjSoqABFKDmABFKDm7AsVDmecIKDmwfKYVm.diag
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti      107 May  1 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti       25 May  1 14:56 wrapper_checkpoint.txt
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue jobs had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue payloads had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue data_in had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue data_out had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue current_data_in had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue validated_jobs had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue validated_payloads had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue monitored_payloads had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_jobs had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_payloads had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,391 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_data_in had 1 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_data_out had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_jobs had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_payloads had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_data_in had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_data_out had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue completed_jobs had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue completed_jobids has 1 job(s)
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue realtimelog_payloads had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.queuehandling         | queue_report              | queue messages had 0 job(s) [purged]
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.control.job                | has_job_completed         | job 5836572472 has completed (purged errors)
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | DEBUG    | pilot.util.realtimelogger        | cleanup                   | attempting real-time logger cleanup
[2023-05-01 14:57:10] 2023-05-01 12:56:39,392 | INFO     | pilot.util.processes             | cleanup                   | overall cleanup function is called
[2023-05-01 14:57:10] 2023-05-01 12:56:39,395 | DEBUG    | pilot.util.processes             | cleanup                   | work directory was removed: /var/lib/boinc_data/boinc-01/slots/5/PanDA_Pilot-5836572472
[2023-05-01 14:57:10] 2023-05-01 12:56:40,399 | INFO     | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [2841056]
[2023-05-01 14:57:10] 2023-05-01 12:56:40,399 | INFO     | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 2841056
[2023-05-01 14:57:10] 2023-05-01 12:56:40,399 | INFO     | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-05-01 14:57:10] 2023-05-01 12:56:41,403 | INFO     | pilot.util.processes             | cleanup                   | collected zombie processes
[2023-05-01 14:57:10] 2023-05-01 12:56:41,403 | INFO     | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=2841056
[2023-05-01 14:57:10] 2023-05-01 12:56:41,469 | INFO     | pilot.util.processes             | kill_processes            | process IDs to be killed: [2841056] (in reverse order)
[2023-05-01 14:57:10] 2023-05-01 12:56:41,513 | WARNING  | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
[2023-05-01 14:57:10] 2023-05-01 12:56:41,513 | INFO     | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
[2023-05-01 14:57:10] 2023-05-01 12:56:41,513 | DEBUG    | pilot.util.queuehandling         | purge_queue               | queue purged
[2023-05-01 14:57:10] 2023-05-01 12:56:41,513 | INFO     | pilot.control.job                | retrieve                  | ready for new job
[2023-05-01 14:57:10] 2023-05-01 12:56:41,513 | INFO     | root                             | retrieve                  | pilot has finished with previous job - re-establishing logging
[2023-05-01 14:57:10] 2023-05-01 12:56:41,514 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-05-01 14:57:10] 2023-05-01 12:56:41,514 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ***  PanDA Pilot version 3.6.0 (68)  ***
[2023-05-01 14:57:10] 2023-05-01 12:56:41,514 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-05-01 14:57:10] 2023-05-01 12:56:41,514 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | 
[2023-05-01 14:57:10] 2023-05-01 12:56:41,515 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | pilot is running in a VM
[2023-05-01 14:57:10] 2023-05-01 12:56:41,515 | INFO     | pilot.util.auxiliary             | display_architecture_info | architecture information:
[2023-05-01 14:57:10] 2023-05-01 12:56:41,515 | INFO     | pilot.util.container             | print_executable          | executing command: cat /etc/os-release
[2023-05-01 14:57:10] 2023-05-01 12:56:41,524 | INFO     | pilot.util.filehandling          | dump                      | cat /etc/os-release:
[2023-05-01 14:57:10] NAME="CentOS Linux"
[2023-05-01 14:57:10] VERSION="7 (Core)"
[2023-05-01 14:57:10] ID="centos"
[2023-05-01 14:57:10] ID_LIKE="rhel fedora"
[2023-05-01 14:57:10] VERSION_ID="7"
[2023-05-01 14:57:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-05-01 14:57:10] ANSI_COLOR="0;31"
[2023-05-01 14:57:10] CPE_NAME="cpe:/o:centos:centos:7"
[2023-05-01 14:57:10] HOME_URL="https://www.centos.org/"
[2023-05-01 14:57:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-05-01 14:57:10] 
[2023-05-01 14:57:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-05-01 14:57:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-05-01 14:57:10] REDHAT_SUPPORT_PRODUCT="centos"
[2023-05-01 14:57:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-05-01 14:57:10] 
[2023-05-01 14:57:10] 2023-05-01 12:56:41,524 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-05-01 14:57:10] 2023-05-01 12:56:42,027 | DEBUG    | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc_data/boinc-01/slots/5
[2023-05-01 14:57:10] 2023-05-01 12:56:42,027 | INFO     | pilot.util.container             | print_executable          | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/5
[2023-05-01 14:57:10] 2023-05-01 12:56:42,039 | DEBUG    | pilot.util.workernode            | get_local_disk_space      | stdout=Filesystem     1048576-blocks  Used Available Capacity Mounted on
[2023-05-01 14:57:10] /dev/sda5               99971 25999     68862      28% /var/lib/boinc_data/boinc-01/slots/5
[2023-05-01 14:57:10] 2023-05-01 12:56:42,039 | DEBUG    | pilot.util.workernode            | get_local_disk_space      | stderr=
[2023-05-01 14:57:10] 2023-05-01 12:56:42,039 | INFO     | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (72207040512 B)
[2023-05-01 14:57:10] 2023-05-01 12:56:42,039 | WARNING  | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
[2023-05-01 14:57:10] 2023-05-01 12:56:42,039 | DEBUG    | pilot.control.job                | retrieve                  | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:42,039 | INFO     | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:42,039 | WARNING  | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
[2023-05-01 14:57:10] 2023-05-01 12:56:42,040 | WARNING  | pilot.control.monitor            | control                   | aborting monitor loop since graceful_stop has been set
[2023-05-01 14:57:10] 2023-05-01 12:56:42,040 | INFO     | pilot.control.monitor            | control                   | [monitor] control thread has ended
[2023-05-01 14:57:10] 2023-05-01 12:56:42,145 | DEBUG    | pilot.control.job                | create_data_payload       | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:42,146 | INFO     | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:42,227 | DEBUG    | pilot.control.payload            | validate_pre              | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:42,227 | INFO     | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:42,283 | DEBUG    | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
[2023-05-01 14:57:10] 2023-05-01 12:56:42,283 | DEBUG    | pilot.control.payload            | control                   | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:42,283 | INFO     | pilot.control.payload            | control                   | [payload] control thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:42,289 | DEBUG    | pilot.control.payload            | validate_post             | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:42,289 | INFO     | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:42,519 | DEBUG    | pilot.control.payload            | execute_payloads          | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:42,519 | INFO     | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:42,659 | DEBUG    | pilot.control.data               | control                   | data control ending since graceful_stop has been set
[2023-05-01 14:57:10] 2023-05-01 12:56:42,659 | DEBUG    | pilot.control.data               | control                   | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:42,659 | INFO     | pilot.control.data               | control                   | [data] control thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:42,673 | DEBUG    | pilot.control.job                | control                   | job control ending since graceful_stop has been set
[2023-05-01 14:57:10] 2023-05-01 12:56:42,673 | DEBUG    | pilot.control.job                | control                   | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:42,673 | INFO     | pilot.control.job                | control                   | [job] control thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:43,040 | DEBUG    | pilot.control.data               | copytool_out              | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:43,040 | INFO     | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:43,143 | DEBUG    | pilot.control.data               | copytool_in               | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:43,143 | INFO     | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:43,175 | DEBUG    | pilot.control.payload            | failed_post               | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:43,175 | INFO     | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:43,422 | DEBUG    | pilot.control.job                | validate                  | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:43,422 | INFO     | pilot.control.job                | validate                  | [job] validate thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:44,387 | WARNING  | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
[2023-05-01 14:57:10] 2023-05-01 12:56:44,387 | DEBUG    | pilot.control.job                | queue_monitor             | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:44,387 | INFO     | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:44,527 | WARNING  | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-05-01 14:57:10] 2023-05-01 12:56:47,527 | DEBUG    | pilot.control.data               | queue_monitoring          | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:47,527 | INFO     | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:56:52,171 | INFO     | pilot.control.payload            | get_logging_info          | job.realtimelogging is not enabled
[2023-05-01 14:57:10] 2023-05-01 12:56:52,171 | DEBUG    | pilot.control.payload            | run_realtimelog           | real-time logging not needed at this point
[2023-05-01 14:57:10] 2023-05-01 12:56:52,171 | DEBUG    | pilot.control.payload            | run_realtimelog           | realtime logger was not found, waiting ..
[2023-05-01 14:57:10] 2023-05-01 12:56:52,171 | DEBUG    | pilot.control.payload            | run_realtimelog           | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:56:52,171 | INFO     | pilot.control.payload            | run_realtimelog           | [payload] run_realtimelog thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:57:09,915 | WARNING  | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
[2023-05-01 14:57:10] 2023-05-01 12:57:09,915 | DEBUG    | pilot.control.job                | job_monitor               | will not set job_aborted yet
[2023-05-01 14:57:10] 2023-05-01 12:57:09,915 | INFO     | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
[2023-05-01 14:57:10] 2023-05-01 12:57:10,779 | DEBUG    | pilot.util.processes             | threads_aborted           | aborting since only the main Pilot thread is still running (total thread count=1 with 0 daemon threa
[2023-05-01 14:57:10] 2023-05-01 12:57:10,779 | DEBUG    | pilot.workflow.generic           | run                       | all relevant threads have aborted (thread count=1)
[2023-05-01 14:57:10] 2023-05-01 12:57:10,779 | INFO     | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
[2023-05-01 14:57:10] 2023-05-01 12:57:10,779 | INFO     | root                             | wrap_up                   | traces error code: 0
[2023-05-01 14:57:10] 2023-05-01 12:57:10,780 | INFO     | root                             | wrap_up                   | pilot has finished (exit code=0, shell exit code=0)
[2023-05-01 14:57:10] 2023-05-01 12:57:10,828 [wrapper] ==== pilot stdout END ====
[2023-05-01 14:57:10] 2023-05-01 12:57:10,829 [wrapper] ==== wrapper stdout RESUME ====
[2023-05-01 14:57:10] 2023-05-01 12:57:10,831 [wrapper] pilotpid: 2830646
[2023-05-01 14:57:10] 2023-05-01 12:57:10,832 [wrapper] Pilot exit status: 0
[2023-05-01 14:57:10] 2023-05-01 12:57:10,837 [wrapper] pandaids: 5836572472
[2023-05-01 14:57:10] 2023-05-01 12:57:10,840 [wrapper] apfmon messages muted
[2023-05-01 14:57:10] 2023-05-01 12:57:10,841 [wrapper] Test setup, not cleaning
[2023-05-01 14:57:10] 2023-05-01 12:57:10,842 [wrapper] ==== wrapper stdout END ====
[2023-05-01 14:57:10] 2023-05-01 12:57:10,844 [wrapper] ==== wrapper stderr END ====
[2023-05-01 14:57:10] 2023-05-01 12:57:10,846 [wrapper] wrapperexiting ec=0, duration=1059
[2023-05-01 14:57:10] 2023-05-01 12:57:10,848 [wrapper] apfmon messages muted
[2023-05-01 14:57:10]  *** Error codes and diagnostics ***
[2023-05-01 14:57:10]     "exeErrorCode": 0,
[2023-05-01 14:57:10]     "exeErrorDiag": "",
[2023-05-01 14:57:10]     "pilotErrorCode": 0,
[2023-05-01 14:57:10]     "pilotErrorDiag": "",
[2023-05-01 14:57:10]  *** Listing of results directory ***
[2023-05-01 14:57:10] insgesamt 47080
[2023-05-01 14:57:10] -rwx------ 1 yeti yeti    27540 Mai  1 13:31 runpilot2-wrapper.sh
[2023-05-01 14:57:10] -rw-r--r-- 1 yeti yeti     4388 Mai  1 13:31 queuedata.json
[2023-05-01 14:57:10] -rw------- 1 yeti yeti   413524 Mai  1 13:31 pilot3.tar.gz
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti      107 Mai  1 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2023-05-01 14:57:10] -rwxr-xr-x 1 yeti yeti     7986 Mai  1 14:39 run_atlas
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti      112 Mai  1 14:39 job.xml
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti    17632 Mai  1 14:39 start_atlas.sh
[2023-05-01 14:57:10] drwxrwx--x 2 yeti yeti     4096 Mai  1 14:39 shared
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti   425360 Mai  1 14:39 input.tar.gz
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti     6434 Mai  1 14:39 init_data.xml
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti 38217911 Mai  1 14:39 EVNT.04972714._000030.pool.root.1
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti        0 Mai  1 14:39 boinc_lockfile
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti     2662 Mai  1 14:39 pandaJob.out
[2023-05-01 14:57:10] -rw------- 1 yeti yeti      462 Mai  1 14:39 setup.sh.local
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  1446236 Mai  1 14:40 cric_ddmendpoints.json
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  1013741 Mai  1 14:40 agis_schedconf.cvmfs.json
[2023-05-01 14:57:10] drwx------ 4 yeti yeti     4096 Mai  1 14:41 pilot3
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti      533 Mai  1 14:49 boinc_task_state.xml
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  2545412 Mai  1 14:50 output.1.66e55af7-8edd-46a1-9830-65f1a4da323c_21178.pool.root
[2023-05-01 14:57:10] -rw------- 1 yeti yeti     1006 Mai  1 14:50 memory_monitor_summary.json
[2023-05-01 14:57:10] -rw------- 1 yeti yeti   430271 Mai  1 14:54 66e55af7-8edd-46a1-9830-65f1a4da323c_21178.1.job.log.tgz
[2023-05-01 14:57:10] -rw------- 1 yeti yeti     7771 Mai  1 14:56 heartbeat.json
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti     8192 Mai  1 14:57 boinc_mmap_file
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti       25 Mai  1 14:57 wrapper_checkpoint.txt
[2023-05-01 14:57:10] -rw------- 1 yeti yeti     9508 Mai  1 14:57 pilotlog.txt
[2023-05-01 14:57:10] -rw------- 1 yeti yeti   247865 Mai  1 14:57 66e55af7-8edd-46a1-9830-65f1a4da323c_21178.1.job.log
[2023-05-01 14:57:10] -rw------- 1 yeti yeti      464 Mai  1 14:57 output.list
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti      748 Mai  1 14:57 runtime_log
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  3246080 Mai  1 14:57 result.tar.gz
[2023-05-01 14:57:10] -rw------- 1 yeti yeti      624 Mai  1 14:57 tPhKDmnvgD3n7Olcko1bjSoqABFKDmABFKDm7AsVDmecIKDmwfKYVm.diag
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti    12606 Mai  1 14:57 runtime_log.err
[2023-05-01 14:57:10] -rw-rw-r-- 1 yeti yeti    29077 Mai  1 14:57 stderr.txt
[2023-05-01 14:57:10] HITS file was successfully produced:
[2023-05-01 14:57:10] -rw------- 1 yeti yeti 2545412 Mai  1 14:50 shared/HITS.pool.root.1
[2023-05-01 14:57:10]  *** Contents of shared directory: ***
[2023-05-01 14:57:10] insgesamt 43420
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti    17632 Mai  1 14:39 start_atlas.sh
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti   425360 Mai  1 14:39 input.tar.gz
[2023-05-01 14:57:10] -rw-r--r-- 2 yeti yeti 38217911 Mai  1 14:39 ATLAS.root_0
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  2545412 Mai  1 14:50 HITS.pool.root.1
[2023-05-01 14:57:10] -rw------- 1 yeti yeti  3246080 Mai  1 14:57 result.tar.gz
14:57:12 (2826881): run_atlas exited; CPU time 576.449440
14:57:12 (2826881): called boinc_finish(0)

</stderr_txt>
]]>


©2024 CERN