Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
13:46:40 (785857): wrapper (7.7.26015): starting
13:46:40 (785857): wrapper: running run_atlas (--nthreads 1)
[2023-05-26 13:46:40] Arguments: --nthreads 1
[2023-05-26 13:46:40] Threads: 1
[2023-05-26 13:46:40] Checking for CVMFS
[2023-05-26 13:46:45] Probing /cvmfs/atlas.cern.ch... OK
[2023-05-26 13:46:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-05-26 13:46:47] Running cvmfs_config stat atlas.cern.ch
[2023-05-26 13:46:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-05-26 13:46:47] 2.10.1.0 786078 0 24728 119434 3 1 2253544 4096001 0 130560 0 0 0.000 824 321 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2023-05-26 13:46:47] CVMFS is ok
[2023-05-26 13:46:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2023-05-26 13:46:47] Small home clusters do not require a local http proxy but it is suggested if
[2023-05-26 13:46:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2023-05-26 13:46:47] Further information can be found at the LHC@home message board.
[2023-05-26 13:46:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-05-26 13:46:47] Checking for apptainer binary...
[2023-05-26 13:46:47] apptainer is not installed, using version from CVMFS
[2023-05-26 13:46:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-05-26 13:46:48] T5810
[2023-05-26 13:46:48] apptainer works
[2023-05-26 13:46:48] Starting ATLAS job with PandaID=5857366180
[2023-05-26 13:46:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-05-26 14:19:50]  *** The last 200 lines of the pilot log: ***
[2023-05-26 14:19:50]  direct_access_wan=False
[2023-05-26 14:19:50]  domain=
[2023-05-26 14:19:50]  filesize=157502
[2023-05-26 14:19:50]  filetype=log
[2023-05-26 14:19:50]  guid=b835185e-e177-4422-8d6f-b84b13feebdd
[2023-05-26 14:19:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2023-05-26 14:19:50]  is_tar=False
[2023-05-26 14:19:50]  lfn=50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log.tgz
[2023-05-26 14:19:50]  mtime=0
[2023-05-26 14:19:50]  protocol_id=None
[2023-05-26 14:19:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2023-05-26 14:19:50]  replicas=None
[2023-05-26 14:19:50]  scope=hc_test
[2023-05-26 14:19:50]  status=None
[2023-05-26 14:19:50]  status_code=0
[2023-05-26 14:19:50]  storage_token=
[2023-05-26 14:19:50]  surl=/var/lib/boinc-client/slots/31/PanDA_Pilot-5857366180/50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log.tgz
[2023-05-26 14:19:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/c5/73/50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log.tgz
[2023-05-26 14:19:50]  workdir=None
[2023-05-26 14:19:50] ]
[2023-05-26 14:19:50] 2023-05-26 20:17:47,717 | INFO     | [attempt=1/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-05-26 14:19:50] 2023-05-26 20:17:48,101 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-05-26 14:19:50] 2023-05-26 20:17:48,101 | INFO     | will try again after 41s..
[2023-05-26 14:19:50] 2023-05-26 20:18:05,323 | INFO     | collecting machine features
[2023-05-26 14:19:50] 2023-05-26 20:18:05,323 | INFO     | machine features path does not exist (path="")
[2023-05-26 14:19:50] 2023-05-26 20:18:29,198 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-05-26 14:19:50] 2023-05-26 20:18:29,784 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-05-26 14:19:50] 2023-05-26 20:18:29,784 | INFO     | will try again after 28s..
[2023-05-26 14:19:50] 2023-05-26 20:18:35,383 | INFO     | 1888s have passed since pilot start
[2023-05-26 14:19:50] 2023-05-26 20:18:47,990 | INFO     | monitor loop #24: job 0:5857366180 is in state 'stageout'
[2023-05-26 14:19:50] 2023-05-26 20:18:47,991 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 779470 B
[2023-05-26 14:19:50] 2023-05-26 20:18:47,991 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 8859 B
[2023-05-26 14:19:50] 2023-05-26 20:18:47,992 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/31
[2023-05-26 14:19:50] 2023-05-26 20:18:48,026 | INFO     | sufficient remaining disk space (193055424512 B)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,027 | INFO     | work directory size check will use 61362667520 B as a max limit (10% grace limit added)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,027 | INFO     | size of work directory /var/lib/boinc-client/slots/31/PanDA_Pilot-5857366180: 1119904 B (within 61362667520 B limit)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,028 | INFO     | pfn file=/var/lib/boinc-client/slots/31/PanDA_Pilot-5857366180/output.1.50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.pool.root does not exist (skip from workdir size
[2023-05-26 14:19:50] 2023-05-26 20:18:48,028 | INFO     | total size of present files: 0 B (workdir size: 1119904 B)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,028 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/31/PanDA_Pilot-5857366180/output.1.50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.pool.root si
[2023-05-26 14:19:50] 2023-05-26 20:18:48,111 | INFO     | number of running child processes to parent process 793233: 1
[2023-05-26 14:19:50] 2023-05-26 20:18:48,112 | INFO     | maximum number of monitored processes: 7
[2023-05-26 14:19:50] 2023-05-26 20:18:48,112 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,112 | INFO     | job 5857366180 has state 'running' - writing heartbeat
[2023-05-26 14:19:50] 2023-05-26 20:18:48,112 | INFO     | collecting machine features
[2023-05-26 14:19:50] 2023-05-26 20:18:48,112 | INFO     | machine features path does not exist (path="")
[2023-05-26 14:19:50] 2023-05-26 20:18:48,113 | INFO     | collecting job features
[2023-05-26 14:19:50] 2023-05-26 20:18:48,113 | INFO     | job features path does not exist (path="")
[2023-05-26 14:19:50] 2023-05-26 20:18:48,113 | INFO     | fitting pss+swap vs Time
[2023-05-26 14:19:50] 2023-05-26 20:18:48,115 | INFO     | current memory leak: 1402.83 B/s (using 22 data points, chi2=2.07)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,116 | INFO     | total number of processed events: 2 (read)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,137 | INFO     | executing command: lscpu
[2023-05-26 14:19:50] 2023-05-26 20:18:48,171 | INFO     | found 14 cores (14 cores per socket, 1 sockets)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,172 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-05-26 14:19:50] 2023-05-26 20:18:48,205 | INFO     | using path: /var/lib/boinc-client/slots/31/PanDA_Pilot-5857366180/memory_monitor_summary.json (trf name=prmon)
[2023-05-26 14:19:50] 2023-05-26 20:18:48,207 | INFO     | extracted standard info from prmon json
[2023-05-26 14:19:50] 2023-05-26 20:18:48,207 | INFO     | extracted standard memory fields from prmon json
[2023-05-26 14:19:50] 2023-05-26 20:18:57,883 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-05-26 14:19:50] 2023-05-26 20:18:58,237 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-05-26 14:19:50] 2023-05-26 20:18:58,238 | WARNING  | cache file=/var/lib/boinc-client/slots/31/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/31/ag
[2023-05-26 14:19:50] 2023-05-26 20:18:58,316 | INFO     | transferring file 50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log.tgz from /var/lib/boinc-client/slots/31/PanDA_Pilot-5857366180/50992fdd-1b4c-48c0-a45e-f7f8e
[2023-05-26 14:19:50] 2023-05-26 20:18:58,316 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/31/PanDA_Pilot-5857366180/50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log.tgz /var/lib/boinc-cl
[2023-05-26 14:19:50] 2023-05-26 20:18:58,353 | INFO     | Adding to output.list: 50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/c5/73/50992fdd-1b4c-
[2023-05-26 14:19:50] 2023-05-26 20:18:58,354 | INFO     | executing command: ps aux -q 789710
[2023-05-26 14:19:50] 2023-05-26 20:18:58,380 | INFO     | summary of transferred files:
[2023-05-26 14:19:50] 2023-05-26 20:18:58,381 | INFO     |  -- lfn=50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log.tgz, status_code=0, status=transferred
[2023-05-26 14:19:50] 2023-05-26 20:18:58,381 | INFO     | stage-out finished correctly
[2023-05-26 14:19:50] 2023-05-26 20:18:58,505 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-05-26 14:19:50] 2023-05-26 20:18:58,643 | INFO     | job 5857366180 has state=finished
[2023-05-26 14:19:50] 2023-05-26 20:18:58,643 | INFO     | preparing for final server update for job 5857366180 in state='finished'
[2023-05-26 14:19:50] 2023-05-26 20:18:58,643 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-05-26 14:19:50] 2023-05-26 20:18:58,644 | INFO     | job 5857366180 has finished - writing final server update
[2023-05-26 14:19:50] 2023-05-26 20:18:58,644 | INFO     | collecting machine features
[2023-05-26 14:19:50] 2023-05-26 20:18:58,644 | INFO     | machine features path does not exist (path="")
[2023-05-26 14:19:50] 2023-05-26 20:18:58,644 | INFO     | collecting job features
[2023-05-26 14:19:50] 2023-05-26 20:18:58,645 | INFO     | job features path does not exist (path="")
[2023-05-26 14:19:50] 2023-05-26 20:18:58,645 | INFO     | fitting pss+swap vs Time
[2023-05-26 14:19:50] 2023-05-26 20:18:58,646 | INFO     | current memory leak: 1527.55 B/s (using 15 data points, chi2=0.28)
[2023-05-26 14:19:50] 2023-05-26 20:18:58,646 | INFO     | total number of processed events: 2 (read)
[2023-05-26 14:19:50] 2023-05-26 20:18:58,664 | INFO     | executing command: lscpu
[2023-05-26 14:19:50] 2023-05-26 20:18:58,690 | INFO     | found 14 cores (14 cores per socket, 1 sockets)
[2023-05-26 14:19:50] 2023-05-26 20:18:58,690 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-05-26 14:19:50] 2023-05-26 20:18:58,723 | INFO     | using path: /var/lib/boinc-client/slots/31/PanDA_Pilot-5857366180/memory_monitor_summary.json (trf name=prmon)
[2023-05-26 14:19:50] 2023-05-26 20:18:58,724 | INFO     | extracted standard info from prmon json
[2023-05-26 14:19:50] 2023-05-26 20:18:58,724 | INFO     | extracted standard memory fields from prmon json
[2023-05-26 14:19:50] 2023-05-26 20:18:58,724 | INFO     | ..............................
[2023-05-26 14:19:50] 2023-05-26 20:18:58,725 | INFO     | . Timing measurements:
[2023-05-26 14:19:50] 2023-05-26 20:18:58,725 | INFO     | . get job = 60 s
[2023-05-26 14:19:50] 2023-05-26 20:18:58,725 | INFO     | . initial setup = 54 s
[2023-05-26 14:19:50] 2023-05-26 20:18:58,725 | INFO     | . payload setup = 31 s
[2023-05-26 14:19:50] 2023-05-26 20:18:58,725 | INFO     | . stage-in = 43 s
[2023-05-26 14:19:50] 2023-05-26 20:18:58,725 | INFO     | . payload execution = 1313 s
[2023-05-26 14:19:50] 2023-05-26 20:18:58,725 | INFO     | . stage-out = 392 s
[2023-05-26 14:19:50] 2023-05-26 20:18:58,725 | INFO     | ..............................
[2023-05-26 14:19:50] 2023-05-26 20:18:58,841 | INFO     | 
[2023-05-26 14:19:50] 2023-05-26 20:18:58,842 | INFO     | job summary report
[2023-05-26 14:19:50] 2023-05-26 20:18:58,842 | INFO     | --------------------------------------------------
[2023-05-26 14:19:50] 2023-05-26 20:18:58,842 | INFO     | PanDA job id: 5857366180
[2023-05-26 14:19:50] 2023-05-26 20:18:58,842 | INFO     | task id: NULL
[2023-05-26 14:19:50] 2023-05-26 20:18:58,842 | INFO     | errors: (none)
[2023-05-26 14:19:50] 2023-05-26 20:18:58,842 | INFO     | status: LOG_TRANSFER = DONE 
[2023-05-26 14:19:50] 2023-05-26 20:18:58,843 | INFO     | pilot state: finished 
[2023-05-26 14:19:50] 2023-05-26 20:18:58,843 | INFO     | transexitcode: 0
[2023-05-26 14:19:50] 2023-05-26 20:18:58,843 | INFO     | exeerrorcode: 0
[2023-05-26 14:19:50] 2023-05-26 20:18:58,843 | INFO     | exeerrordiag: 
[2023-05-26 14:19:50] 2023-05-26 20:18:58,843 | INFO     | exitcode: 0
[2023-05-26 14:19:50] 2023-05-26 20:18:58,843 | INFO     | exitmsg: OK
[2023-05-26 14:19:50] 2023-05-26 20:18:58,843 | INFO     | cpuconsumptiontime: 679 s
[2023-05-26 14:19:50] 2023-05-26 20:18:58,844 | INFO     | nevents: 2
[2023-05-26 14:19:50] 2023-05-26 20:18:58,844 | INFO     | neventsw: 0
[2023-05-26 14:19:50] 2023-05-26 20:18:58,844 | INFO     | pid: 793233
[2023-05-26 14:19:50] 2023-05-26 20:18:58,844 | INFO     | pgrp: 793233
[2023-05-26 14:19:50] 2023-05-26 20:18:58,844 | INFO     | corecount: 1
[2023-05-26 14:19:50] 2023-05-26 20:18:58,844 | INFO     | event service: False
[2023-05-26 14:19:50] 2023-05-26 20:18:58,844 | INFO     | sizes: {0: 2538368, 1: 2538623, 12: 2538769, 23: 2538797, 33: 2538825, 44: 2538853, 46: 2539069, 55: 2539097, 1348: 2559665, 1742: 2569241}
[2023-05-26 14:19:50] 2023-05-26 20:18:58,844 | INFO     | --------------------------------------------------
[2023-05-26 14:19:50] 2023-05-26 20:18:58,845 | INFO     | 
[2023-05-26 14:19:50] 2023-05-26 20:18:58,845 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/31
[2023-05-26 14:19:50] 2023-05-26 20:18:58,864 | INFO     | queue jobs had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,864 | INFO     | queue payloads had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,864 | INFO     | queue data_in had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,864 | INFO     | queue data_out had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,865 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,865 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,865 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,865 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,865 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,865 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,865 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,866 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,866 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,866 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,866 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,866 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,866 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,866 | INFO     | queue completed_jobids has 1 job(s)
[2023-05-26 14:19:50] 2023-05-26 20:18:58,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,867 | INFO     | queue messages had 0 job(s) [purged]
[2023-05-26 14:19:50] 2023-05-26 20:18:58,867 | INFO     | job 5857366180 has completed (purged errors)
[2023-05-26 14:19:50] 2023-05-26 20:18:58,867 | INFO     | overall cleanup function is called
[2023-05-26 14:19:50] 2023-05-26 20:18:59,874 | INFO     | --- collectZombieJob: --- 10, [793233]
[2023-05-26 14:19:50] 2023-05-26 20:18:59,875 | INFO     | zombie collector trying to kill pid 793233
[2023-05-26 14:19:50] 2023-05-26 20:18:59,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-05-26 14:19:50] 2023-05-26 20:19:00,878 | INFO     | collected zombie processes
[2023-05-26 14:19:50] 2023-05-26 20:19:00,879 | INFO     | will now attempt to kill all subprocesses of pid=793233
[2023-05-26 14:19:50] 2023-05-26 20:19:00,960 | INFO     | process IDs to be killed: [793233] (in reverse order)
[2023-05-26 14:19:50] 2023-05-26 20:19:01,021 | WARNING  | found no corresponding commands to process id(s)
[2023-05-26 14:19:50] 2023-05-26 20:19:01,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-05-26 14:19:50] 2023-05-26 20:19:01,021 | INFO     | ready for new job
[2023-05-26 14:19:50] 2023-05-26 20:19:01,022 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-05-26 14:19:50] 2023-05-26 20:19:01,023 | INFO     | ****************************************
[2023-05-26 14:19:50] 2023-05-26 20:19:01,023 | INFO     | ***  PanDA Pilot version 3.5.1 (17)  ***
[2023-05-26 14:19:50] 2023-05-26 20:19:01,023 | INFO     | ****************************************
[2023-05-26 14:19:50] 2023-05-26 20:19:01,024 | INFO     | 
[2023-05-26 14:19:50] 2023-05-26 20:19:01,044 | INFO     | architecture information:
[2023-05-26 14:19:50] 2023-05-26 20:19:01,111 | INFO     | 
[2023-05-26 14:19:50] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2023-05-26 14:19:50] Distributor ID:	CentOS
[2023-05-26 14:19:50] Description:	CentOS Linux release 7.9.2009 (Core)
[2023-05-26 14:19:50] Release:	7.9.2009
[2023-05-26 14:19:50] Codename:	Core
[2023-05-26 14:19:50] 2023-05-26 20:19:01,112 | INFO     | ****************************************
[2023-05-26 14:19:50] 2023-05-26 20:19:01,615 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/31
[2023-05-26 14:19:50] 2023-05-26 20:19:01,635 | INFO     | sufficient remaining disk space (193057521664 B)
[2023-05-26 14:19:50] 2023-05-26 20:19:01,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-05-26 14:19:50] 2023-05-26 20:19:01,636 | INFO     | [job] retrieve thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:01,636 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-05-26 14:19:50] 2023-05-26 20:19:01,743 | INFO     | [payload] execute_payloads thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:01,780 | INFO     | [job] validate thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:01,895 | INFO     | [data] copytool_in thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:02,148 | INFO     | [payload] control thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:02,306 | INFO     | [job] control thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:02,327 | INFO     | [data] control thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:02,438 | INFO     | [monitor] control thread has ended
[2023-05-26 14:19:50] 2023-05-26 20:19:02,585 | INFO     | [job] create_data_payload thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:02,637 | INFO     | [data] copytool_out thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:02,737 | INFO     | [payload] validate_post thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:02,791 | INFO     | [payload] validate_pre thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:02,811 | INFO     | [payload] failed_post thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:03,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-05-26 14:19:50] 2023-05-26 20:19:03,851 | INFO     | [job] queue monitor thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:04,622 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-05-26 14:19:50] 2023-05-26 20:19:07,623 | INFO     | [data] queue_monitor thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:17,858 | INFO     | job.realtimelogging is not enabled
[2023-05-26 14:19:50] 2023-05-26 20:19:17,859 | INFO     | [payload] run_realtimelog thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:49,810 | WARNING  | no jobs in monitored_payloads queue (waited for 62 s)
[2023-05-26 14:19:50] 2023-05-26 20:19:49,811 | INFO     | [job] job monitor thread has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:49,887 | INFO     | end of generic workflow (traces error code: 0)
[2023-05-26 14:19:50] 2023-05-26 20:19:49,887 | INFO     | traces error code: 0
[2023-05-26 14:19:50] 2023-05-26 20:19:49,887 | INFO     | pilot has finished
[2023-05-26 14:19:50] 2023-05-26 20:19:49,963 [wrapper] ==== pilot stdout END ====
[2023-05-26 14:19:50] 2023-05-26 20:19:49,968 [wrapper] ==== wrapper stdout RESUME ====
[2023-05-26 14:19:50] 2023-05-26 20:19:49,972 [wrapper] pilotpid: 789710
[2023-05-26 14:19:50] 2023-05-26 20:19:49,980 [wrapper] Pilot exit status: 0
[2023-05-26 14:19:50] 2023-05-26 20:19:49,996 [wrapper] pandaids: 5857366180
[2023-05-26 14:19:50] 2023-05-26 20:19:50,005 [wrapper] apfmon messages muted
[2023-05-26 14:19:50] 2023-05-26 20:19:50,007 [wrapper] Test setup, not cleaning
[2023-05-26 14:19:50] 2023-05-26 20:19:50,024 [wrapper] ==== wrapper stdout END ====
[2023-05-26 14:19:50] 2023-05-26 20:19:50,032 [wrapper] ==== wrapper stderr END ====
[2023-05-26 14:19:50] 2023-05-26 20:19:50,038 [wrapper] wrapperexiting ec=0, duration=1982
[2023-05-26 14:19:50] 2023-05-26 20:19:50,040 [wrapper] apfmon messages muted
[2023-05-26 14:19:50]  *** Error codes and diagnostics ***
[2023-05-26 14:19:50]     "exeErrorCode": 0,
[2023-05-26 14:19:50]     "exeErrorDiag": "",
[2023-05-26 14:19:50]     "pilotErrorCode": 0,
[2023-05-26 14:19:50]     "pilotErrorDiag": "",
[2023-05-26 14:19:50]  *** Listing of results directory ***
[2023-05-26 14:19:50] total 42932
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc   393247 May 26 12:37 pilot3.tar.gz
[2023-05-26 14:19:50] -rwx------ 1 boinc boinc    27811 May 26 13:25 runpilot2-wrapper.sh
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc     4388 May 26 13:25 queuedata.json
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc      107 May 26 13:46 wrapper_26015_x86_64-pc-linux-gnu
[2023-05-26 14:19:50] -rwxr-xr-x 1 boinc boinc     7986 May 26 13:46 run_atlas
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc      112 May 26 13:46 job.xml
[2023-05-26 14:19:50] -rw-r--r-- 2 boinc boinc    17604 May 26 13:46 start_atlas.sh
[2023-05-26 14:19:50] drwxrwx--x 2 boinc boinc     4096 May 26 13:46 shared
[2023-05-26 14:19:50] -rw-r--r-- 2 boinc boinc   403723 May 26 13:46 input.tar.gz
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc     9118 May 26 13:46 init_data.xml
[2023-05-26 14:19:50] -rw-r--r-- 2 boinc boinc 37438704 May 26 13:46 EVNT.04972714._000033.pool.root.1
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc        0 May 26 13:46 boinc_lockfile
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc     2753 May 26 13:46 pandaJob.out
[2023-05-26 14:19:50] -rw------- 1 boinc boinc      424 May 26 13:46 setup.sh.local
[2023-05-26 14:19:50] -rw------- 1 boinc boinc  1016842 May 26 13:47 agis_schedconf.cvmfs.json
[2023-05-26 14:19:50] -rw------- 1 boinc boinc  1419598 May 26 13:47 cric_ddmendpoints.json
[2023-05-26 14:19:50] drwx------ 4 boinc boinc     4096 May 26 13:49 pilot3
[2023-05-26 14:19:50] -rw------- 1 boinc boinc  1237698 May 26 14:12 output.1.50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.pool.root
[2023-05-26 14:19:50] -rw------- 1 boinc boinc     1028 May 26 14:12 memory_monitor_summary.json
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc      533 May 26 14:12 boinc_task_state.xml
[2023-05-26 14:19:50] -rw------- 1 boinc boinc   157502 May 26 14:15 50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log.tgz
[2023-05-26 14:19:50] -rw------- 1 boinc boinc     6638 May 26 14:18 heartbeat.json
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc     8192 May 26 14:19 boinc_mmap_file
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc       25 May 26 14:19 wrapper_checkpoint.txt
[2023-05-26 14:19:50] -rw------- 1 boinc boinc     2879 May 26 14:19 pilotlog.txt
[2023-05-26 14:19:50] -rw------- 1 boinc boinc   136291 May 26 14:19 50992fdd-1b4c-48c0-a45e-f7f8ec82ba1b_23008.1.job.log
[2023-05-26 14:19:50] -rw------- 1 boinc boinc      464 May 26 14:19 output.list
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc      748 May 26 14:19 runtime_log
[2023-05-26 14:19:50] -rw------- 1 boinc boinc  1546240 May 26 14:19 result.tar.gz
[2023-05-26 14:19:50] -rw------- 1 boinc boinc      631 May 26 14:19 S8kNDmXFsM3n7Olcko1bjSoqABFKDmABFKDm7AsVDmnGKKDmHA5Swn.diag
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc    11958 May 26 14:19 runtime_log.err
[2023-05-26 14:19:50] -rw-r--r-- 1 boinc boinc    22521 May 26 14:19 stderr.txt
[2023-05-26 14:19:50] HITS file was successfully produced:
[2023-05-26 14:19:50] -rw------- 1 boinc boinc 1237698 May 26 14:12 shared/HITS.pool.root.1
[2023-05-26 14:19:50]  *** Contents of shared directory: ***
[2023-05-26 14:19:50] total 39704
[2023-05-26 14:19:50] -rw-r--r-- 2 boinc boinc    17604 May 26 13:46 start_atlas.sh
[2023-05-26 14:19:50] -rw-r--r-- 2 boinc boinc   403723 May 26 13:46 input.tar.gz
[2023-05-26 14:19:50] -rw-r--r-- 2 boinc boinc 37438704 May 26 13:46 ATLAS.root_0
[2023-05-26 14:19:50] -rw------- 1 boinc boinc  1237698 May 26 14:12 HITS.pool.root.1
[2023-05-26 14:19:50] -rw------- 1 boinc boinc  1546240 May 26 14:19 result.tar.gz
14:19:51 (785857): run_atlas exited; CPU time 664.442980
14:19:51 (785857): called boinc_finish(0)

</stderr_txt>
]]>

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