Name JoGODmn0lO3n7Olcko1bjSoqABFKDmABFKDm7AsVDmlfKKDmu17jam_1
Workunit 2309847
Created 1 Jun 2023, 1:27:08 UTC
Sent 1 Jun 2023, 1:35:38 UTC
Report deadline 8 Jun 2023, 1:35:38 UTC
Received 1 Jun 2023, 2:41:04 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4759
Run time 21 min 43 sec
CPU time 7 min 25 sec
Validate state Valid
Credit 12.22
Device peak FLOPS 3.77 GFLOPS
Application version ATLAS Simulation v3.01 (vbox64_mt_mcore_atlas)
windows_x86_64
Peak working set size 73.37 MB
Peak swap size 77.86 MB
Peak disk usage 1.13 GB

Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-05-31 22:13:44 (2816): Detected: vboxwrapper 26206
2023-05-31 22:13:44 (2816): Detected: BOINC client v7.20.2
2023-05-31 22:13:46 (2816): Detected: VirtualBox VboxManage Interface (Version: 6.1.16)
2023-05-31 22:13:46 (2816): Successfully copied 'init_data.xml' to the shared directory.
2023-05-31 22:13:46 (2816): Create VM. (boinc_e3ff908dbed66704, slot#12)
2023-05-31 22:13:47 (2816): Setting Memory Size for VM. (4100MB)
2023-05-31 22:13:47 (2816): Setting CPU Count for VM. (1)
2023-05-31 22:13:47 (2816): Setting Chipset Options for VM.
2023-05-31 22:13:48 (2816): Setting Graphics Controller Options for VM.
2023-05-31 22:13:48 (2816): Setting Boot Options for VM.
2023-05-31 22:13:48 (2816): Setting Network Configuration for NAT.
2023-05-31 22:13:48 (2816): Enabling VM Network Access.
2023-05-31 22:13:49 (2816): Disabling USB Support for VM.
2023-05-31 22:13:49 (2816): Disabling COM Port Support for VM.
2023-05-31 22:13:49 (2816): Disabling LPT Port Support for VM.
2023-05-31 22:13:50 (2816): Disabling Audio Support for VM.
2023-05-31 22:13:50 (2816): Disabling Clipboard Support for VM.
2023-05-31 22:13:50 (2816): Disabling Drag and Drop Support for VM.
2023-05-31 22:13:50 (2816): Adding storage controller(s) to VM.
2023-05-31 22:13:51 (2816): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-05-31 22:13:52 (2816): Adding VirtualBox Guest Additions to VM.
2023-05-31 22:13:52 (2816): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-05-31 22:13:52 (2816): forwarding host port 8517 to guest port 80
2023-05-31 22:13:52 (2816): Enabling remote desktop for VM.
2023-05-31 22:13:53 (2816): Required extension pack not installed, remote desktop not enabled.
2023-05-31 22:13:53 (2816): Enabling shared directory for VM.
2023-05-31 22:13:53 (2816): Starting VM using VBoxManage interface. (boinc_e3ff908dbed66704, slot#12)
2023-05-31 22:14:00 (2816): Successfully started VM. (PID = '568')
2023-05-31 22:14:00 (2816): Reporting VM Process ID to BOINC.
2023-05-31 22:14:00 (2816): Guest Log: BIOS: VirtualBox 6.1.16
2023-05-31 22:14:00 (2816): Guest Log: CPUID EDX: 0x178bfbff
2023-05-31 22:14:00 (2816): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-05-31 22:14:00 (2816): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-05-31 22:14:00 (2816): VM state change detected. (old = 'poweredoff', new = 'running')
2023-05-31 22:14:00 (2816): Detected: Web Application Enabled (http://localhost:8517)
2023-05-31 22:14:00 (2816): Preference change detected
2023-05-31 22:14:00 (2816): Setting CPU throttle for VM. (90%)
2023-05-31 22:14:00 (2816): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2023-05-31 22:14:02 (2816): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-05-31 22:14:02 (2816): Guest Log: BIOS: Booting from Hard Disk...
2023-05-31 22:14:06 (2816): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-05-31 22:14:06 (2816): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-05-31 22:14:06 (2816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-05-31 22:14:15 (2816): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-05-31 22:14:15 (2816): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-05-31 22:14:35 (2816): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-05-31 22:14:35 (2816): Guest Log: 00:00:00.000334 main     Log opened 2023-05-31T22:14:34.267185000Z
2023-05-31 22:14:35 (2816): Guest Log: 00:00:00.000506 main     OS Product: Linux
2023-05-31 22:14:35 (2816): Guest Log: 00:00:00.000577 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-05-31 22:14:35 (2816): Guest Log: 00:00:00.000657 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-05-31 22:14:35 (2816): Guest Log: 00:00:00.000723 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-05-31 22:14:35 (2816): Guest Log: 00:00:00.000726 main     Process ID: 1252
2023-05-31 22:14:35 (2816): Guest Log: 00:00:00.000726 main     Package type: LINUX_64BITS_GENERIC
2023-05-31 22:14:35 (2816): Guest Log: 00:00:00.002931 main     5.2.32 r132073 started. Verbose level = 0
2023-05-31 22:14:36 (2816): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-05-31 22:14:36 (2816): Guest Log: [INFO] Mounting shared directory
2023-05-31 22:14:36 (2816): Guest Log: [INFO] Checking for init_data.xml
2023-05-31 22:14:46 (2816): Guest Log: 00:00:10.056371 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 036 021 000ns (GuestNow=1 685 585 685 358 578 000 ns GuestLast=1 685 571 274 322 557 000 ns fSetTimeLastLoop=true )
2023-05-31 22:15:07 (2816): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-05-31 22:15:08 (2816): Guest Log: [INFO] Detected branch: dev
2023-05-31 22:15:08 (2816): Guest Log: This is the dev version of the ATLAS job wrapper
2023-05-31 22:15:08 (2816): Guest Log: Copying input files
2023-05-31 22:15:10 (2816): Guest Log: Copied input files into RunAtlas.
2023-05-31 22:15:10 (2816): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-05-31 22:15:10 (2816): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-05-31 22:15:10 (2816): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-05-31 22:15:10 (2816): Guest Log: Further information can be found at the LHC@home message board.
2023-05-31 22:15:26 (2816): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-05-31 22:15:31 (2816): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-05-31 22:15:31 (2816): Guest Log: 2.6.3.0 1550 0 32108 119627 4 1 3116374 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2023-05-31 22:15:35 (2816): Guest Log: copied the webapp to /var/www
2023-05-31 22:15:35 (2816): Guest Log: core_number=1
2023-05-31 22:15:42 (2816): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-05-31 22:15:43 (2816): Guest Log:  *** Starting ATLAS job. (PandaID=5861536475 taskID=NULL&cor) ***
2023-05-31 22:40:17 (2816): Guest Log:  *** Job finished ***
2023-05-31 22:40:17 (2816): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-05-31 22:40:17 (2816): Guest Log:  *** Error codes and diagnostics ***
2023-05-31 22:40:17 (2816): Guest Log:     "exeErrorCode": 65,
2023-05-31 22:40:17 (2816): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2023-05-31 22:40:17 (2816): Guest Log:     "pilotErrorCode": 1305,
2023-05-31 22:40:17 (2816): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-06-01 02:32:33,142 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
2023-05-31 22:40:17 (2816): Guest Log:  *** Listing of results directory ***
2023-05-31 22:40:17 (2816): Guest Log: total 4340
2023-05-31 22:40:17 (2816): Guest Log: -rwx------. 1 atlas atlas   27809 Jun  1 01:10 runpilot2-wrapper.sh
2023-05-31 22:40:17 (2816): Guest Log: -rw-r--r--. 1 atlas atlas    4388 Jun  1 01:10 queuedata.json
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas  417013 Jun  1 01:10 pilot3.tar.gz
2023-05-31 22:40:17 (2816): Guest Log: -rwxr-xr-x. 1 atlas atlas    8960 Jun  1 02:15 init_data.xml
2023-05-31 22:40:17 (2816): Guest Log: -rwxr-xr-x. 1 atlas atlas  428899 Jun  1 02:15 input.tar.gz
2023-05-31 22:40:17 (2816): Guest Log: -rwxr-xr-x. 1 atlas atlas   17632 Jun  1 02:15 start_atlas.sh
2023-05-31 22:40:17 (2816): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jun  1 02:15 EVNT.04972714._000023.pool.root.1 -> /data/./ATLAS.root_0
2023-05-31 22:40:17 (2816): Guest Log: -rw-r--r--. 1 atlas atlas    2662 Jun  1 02:15 pandaJob.out
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas     424 Jun  1 02:15 setup.sh.local
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas 1416894 Jun  1 02:19 cric_ddmendpoints.json
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas 1018185 Jun  1 02:19 agis_schedconf.cvmfs.json
2023-05-31 22:40:17 (2816): Guest Log: drwx------. 4 atlas atlas     284 Jun  1 02:20 pilot3
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas    1024 Jun  1 02:32 memory_monitor_summary.json
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas   91076 Jun  1 02:32 32f51e5f-d9e8-4576-8fc3-ca0ac8d7d4b4_42087.1.job.log.tgz
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas    7539 Jun  1 02:39 heartbeat.json
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas    8526 Jun  1 02:40 pilotlog.txt
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas  411735 Jun  1 02:40 32f51e5f-d9e8-4576-8fc3-ca0ac8d7d4b4_42087.1.job.log
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas     227 Jun  1 02:40 output.list
2023-05-31 22:40:17 (2816): Guest Log: -rw-r--r--. 1 atlas atlas     686 Jun  1 02:40 runtime_log
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas  522240 Jun  1 02:40 result.tar.gz
2023-05-31 22:40:17 (2816): Guest Log: -rw-r--r--. 1 atlas atlas   11211 Jun  1 02:40 runtime_log.err
2023-05-31 22:40:17 (2816): Guest Log: -rw-------. 1 atlas atlas     629 Jun  1 02:40 JoGODmn0lO3n7Olcko1bjSoqABFKDmABFKDm7AsVDmlfKKDmu17jam.diag
2023-05-31 22:40:17 (2816): Guest Log: Looking for outputfile output.1.32f51e5f-d9e8-4576-8fc3-ca0ac8d7d4b4_42087.pool.root
2023-05-31 22:40:17 (2816): Guest Log: No HITS file was produced
2023-05-31 22:40:17 (2816): Guest Log: Successfully finished the ATLAS job!
2023-05-31 22:40:17 (2816): Guest Log: Copying the results back to the shared directory!
2023-05-31 22:40:17 (2816): Guest Log:  *** Contents of shared directory: ***
2023-05-31 22:40:17 (2816): Guest Log: total 38096
2023-05-31 22:40:17 (2816): Guest Log: -rwxrwxrwx. 1 root root 38019645 Jun  1 02:13 ATLAS.root_0
2023-05-31 22:40:17 (2816): Guest Log: -rwxrwxrwx. 1 root root     8960 Jun  1 02:13 init_data.xml
2023-05-31 22:40:17 (2816): Guest Log: -rwxrwxrwx. 1 root root   428899 Jun  1 01:35 input.tar.gz
2023-05-31 22:40:17 (2816): Guest Log: -rwxrwxrwx. 1 root root   522240 Jun  1 02:40 result.tar.gz
2023-05-31 22:40:17 (2816): Guest Log: -rwxrwxrwx. 1 root root    17632 Jun  1 01:35 start_atlas.sh
2023-05-31 22:40:17 (2816): Guest Log:  *** Success! Shutting down the machine. ***
2023-05-31 22:40:17 (2816): VM Completion File Detected.
2023-05-31 22:40:17 (2816): Powering off VM.
2023-05-31 22:40:19 (2816): Successfully stopped VM.
2023-05-31 22:40:19 (2816): Deregistering VM. (boinc_e3ff908dbed66704, slot#12)
2023-05-31 22:40:19 (2816): Removing network bandwidth throttle group from VM.
2023-05-31 22:40:19 (2816): Removing VM from VirtualBox.
22:40:24 (2816): called boinc_finish(0)

</stderr_txt>
]]>


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