Name ixfNDm0biQ3n7Olcko1bjSoqABFKDmABFKDm7AsVDmC0KKDmymkSVn_0
Workunit 2310758
Created 6 Jun 2023, 9:56:55 UTC
Sent 6 Jun 2023, 10:10:51 UTC
Report deadline 13 Jun 2023, 10:10:51 UTC
Received 6 Jun 2023, 10:37:40 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1498
Run time 25 min 12 sec
CPU time 17 min 23 sec
Validate state Valid
Credit 8.97
Device peak FLOPS 6.51 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.45 GB
Peak swap size 2.12 GB
Peak disk usage 82.99 MB

Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
11:11:46 (28177): wrapper (7.7.26015): starting
11:11:46 (28177): wrapper: running run_atlas (--nthreads 2)
[2023-06-06 11:11:46] Arguments: --nthreads 2
[2023-06-06 11:11:46] Threads: 2
[2023-06-06 11:11:46] Checking for CVMFS
[2023-06-06 11:11:46] Probing /cvmfs/atlas.cern.ch... OK
[2023-06-06 11:11:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-06-06 11:11:46] Running cvmfs_config stat atlas.cern.ch
[2023-06-06 11:11:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-06-06 11:11:46] 2.9.0.0 2923 38 38684 119828 1 71 2941328 4194305 0 130560 0 135644 97.215 524031 480 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-06-06 11:11:46] CVMFS is ok
[2023-06-06 11:11:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-06-06 11:11:46] Checking for apptainer binary...
[2023-06-06 11:11:46] Using apptainer found in PATH at /usr/bin/apptainer
[2023-06-06 11:11:46] Running /usr/bin/apptainer --version
[2023-06-06 11:11:47] apptainer version 1.0.3
[2023-06-06 11:11:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-06-06 11:11:47] TeeC16
[2023-06-06 11:11:47] apptainer works
[2023-06-06 11:11:47] Set ATHENA_PROC_NUMBER=2
[2023-06-06 11:11:47] Set ATHENA_CORE_NUMBER=2
[2023-06-06 11:11:47] Starting ATLAS job with PandaID=5866733496
[2023-06-06 11:11:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-06-06 11:36:56]  *** The last 200 lines of the pilot log: ***
[2023-06-06 11:36:56] 2023-06-06 10:36:00,162 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:02,665 | INFO     | monitor loop #223: job 0:5866733496 is in state 'stageout'
[2023-06-06 11:36:56] 2023-06-06 10:36:02,706 | INFO     | number of running child processes to parent process 6763: 1
[2023-06-06 11:36:56] 2023-06-06 10:36:02,706 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:05,209 | INFO     | monitor loop #224: job 0:5866733496 is in state 'stageout'
[2023-06-06 11:36:56] 2023-06-06 10:36:05,248 | INFO     | number of running child processes to parent process 6763: 1
[2023-06-06 11:36:56] 2023-06-06 10:36:05,248 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:07,751 | INFO     | monitor loop #225: job 0:5866733496 is in state 'stageout'
[2023-06-06 11:36:56] 2023-06-06 10:36:07,791 | INFO     | number of running child processes to parent process 6763: 1
[2023-06-06 11:36:56] 2023-06-06 10:36:07,792 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:10,295 | INFO     | monitor loop #226: job 0:5866733496 is in state 'stageout'
[2023-06-06 11:36:56] 2023-06-06 10:36:10,335 | INFO     | number of running child processes to parent process 6763: 1
[2023-06-06 11:36:56] 2023-06-06 10:36:10,335 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:12,838 | INFO     | monitor loop #227: job 0:5866733496 is in state 'stageout'
[2023-06-06 11:36:56] 2023-06-06 10:36:12,882 | INFO     | number of running child processes to parent process 6763: 1
[2023-06-06 11:36:56] 2023-06-06 10:36:12,882 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:15,385 | INFO     | monitor loop #228: job 0:5866733496 is in state 'stageout'
[2023-06-06 11:36:56] 2023-06-06 10:36:15,427 | INFO     | number of running child processes to parent process 6763: 1
[2023-06-06 11:36:56] 2023-06-06 10:36:15,427 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:17,930 | INFO     | monitor loop #229: job 0:5866733496 is in state 'stageout'
[2023-06-06 11:36:56] 2023-06-06 10:36:17,969 | INFO     | number of running child processes to parent process 6763: 1
[2023-06-06 11:36:56] 2023-06-06 10:36:17,970 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:20,473 | INFO     | monitor loop #230: job 0:5866733496 is in state 'stageout'
[2023-06-06 11:36:56] 2023-06-06 10:36:20,510 | INFO     | number of running child processes to parent process 6763: 1
[2023-06-06 11:36:56] 2023-06-06 10:36:20,511 | INFO     | maximum number of monitored processes: 7
[2023-06-06 11:36:56] 2023-06-06 10:36:21,847 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-06-06 11:36:56] 2023-06-06 10:36:22,013 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-06-06 11:36:56] 2023-06-06 10:36:22,014 | WARNING  | cache file=/home/m/BOINC/slots/4/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/4/agis_ddmendpoints.ag
[2023-06-06 11:36:56] 2023-06-06 10:36:22,060 | INFO     | transferring file 3102b12f-c5e9-4543-8b36-0cece8ef847e_15976.job.log.tgz from /home/m/BOINC/slots/4/PanDA_Pilot-5866733496/3102b12f-c5e9-4543-8b36-0cece8ef847e_159
[2023-06-06 11:36:56] 2023-06-06 10:36:22,060 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/4/PanDA_Pilot-5866733496/3102b12f-c5e9-4543-8b36-0cece8ef847e_15976.job.log.tgz /home/m/BOINC/slots/4/3102b1
[2023-06-06 11:36:56] 2023-06-06 10:36:22,079 | INFO     | Adding to output.list: 3102b12f-c5e9-4543-8b36-0cece8ef847e_15976.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/9c/2e/3102b12f-c5e9-45
[2023-06-06 11:36:56] 2023-06-06 10:36:22,079 | INFO     | executing command: ps aux -q 31586
[2023-06-06 11:36:56] 2023-06-06 10:36:22,101 | INFO     | summary of transferred files:
[2023-06-06 11:36:56] 2023-06-06 10:36:22,102 | INFO     |  -- lfn=3102b12f-c5e9-4543-8b36-0cece8ef847e_15976.job.log.tgz, status_code=0, status=transferred
[2023-06-06 11:36:56] 2023-06-06 10:36:22,102 | INFO     | stage-out finished correctly
[2023-06-06 11:36:56] 2023-06-06 10:36:23,011 | INFO     | monitor loop #231: job 0:5866733496 is in state 'finished'
[2023-06-06 11:36:56] 2023-06-06 10:36:23,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-06 11:36:56] 2023-06-06 10:36:25,279 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-06-06 11:36:56] 2023-06-06 10:36:25,515 | INFO     | monitor loop #232: job 0:5866733496 is in state 'finished'
[2023-06-06 11:36:56] 2023-06-06 10:36:25,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-06 11:36:56] 2023-06-06 10:36:27,581 | INFO     | job 5866733496 has state=finished
[2023-06-06 11:36:56] 2023-06-06 10:36:27,582 | INFO     | preparing for final server update for job 5866733496 in state='finished'
[2023-06-06 11:36:56] 2023-06-06 10:36:27,582 | INFO     | this job has now completed (state=finished)
[2023-06-06 11:36:56] 2023-06-06 10:36:27,582 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-06-06 11:36:56] 2023-06-06 10:36:27,582 | INFO     | job 5866733496 has finished - writing final server update
[2023-06-06 11:36:56] 2023-06-06 10:36:27,584 | INFO     | fitting pss+swap vs Time
[2023-06-06 11:36:56] 2023-06-06 10:36:27,584 | INFO     | current memory leak: -543.83 B/s (using 8 data points, chi2=0.06)
[2023-06-06 11:36:56] 2023-06-06 10:36:27,585 | INFO     | total number of processed events: 2 (read)
[2023-06-06 11:36:56] 2023-06-06 10:36:27,604 | INFO     | executing command: lscpu
[2023-06-06 11:36:56] 2023-06-06 10:36:27,626 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-06-06 11:36:56] 2023-06-06 10:36:27,626 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-06-06 11:36:56] 2023-06-06 10:36:27,659 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-06-06 11:36:56] 2023-06-06 10:36:28,019 | INFO     | monitor loop #233: job 0:5866733496 is in state 'finished'
[2023-06-06 11:36:56] 2023-06-06 10:36:28,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-06 11:36:56] 2023-06-06 10:36:30,522 | INFO     | monitor loop #234: job 0:5866733496 is in state 'finished'
[2023-06-06 11:36:56] 2023-06-06 10:36:30,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-06 11:36:56] 2023-06-06 10:36:33,026 | INFO     | monitor loop #235: job 0:5866733496 is in state 'finished'
[2023-06-06 11:36:56] 2023-06-06 10:36:33,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-06 11:36:56] 2023-06-06 10:36:35,529 | INFO     | monitor loop #236: job 0:5866733496 is in state 'finished'
[2023-06-06 11:36:56] 2023-06-06 10:36:35,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-06 11:36:56] 2023-06-06 10:36:36,224 | INFO     | executing command: python3 /home/m/BOINC/slots/4/pilot3/pilot/scripts/cpu_arch.py --alg gcc
[2023-06-06 11:36:56] 2023-06-06 10:36:36,328 | INFO     | using path: /home/m/BOINC/slots/4/PanDA_Pilot-5866733496/memory_monitor_summary.json (trf name=prmon)
[2023-06-06 11:36:56] 2023-06-06 10:36:36,329 | INFO     | extracted standard info from prmon json
[2023-06-06 11:36:56] 2023-06-06 10:36:36,329 | INFO     | extracted standard memory fields from prmon json
[2023-06-06 11:36:56] 2023-06-06 10:36:36,329 | INFO     | ..............................
[2023-06-06 11:36:56] 2023-06-06 10:36:36,329 | INFO     | . Timing measurements:
[2023-06-06 11:36:56] 2023-06-06 10:36:36,329 | INFO     | . get job = 53 s
[2023-06-06 11:36:56] 2023-06-06 10:36:36,329 | INFO     | . initial setup = 60 s
[2023-06-06 11:36:56] 2023-06-06 10:36:36,330 | INFO     | . payload setup = 8 s
[2023-06-06 11:36:56] 2023-06-06 10:36:36,330 | INFO     | . stage-in = 59 s
[2023-06-06 11:36:56] 2023-06-06 10:36:36,330 | INFO     | . payload execution = 863 s
[2023-06-06 11:36:56] 2023-06-06 10:36:36,330 | INFO     | . stage-out = 394 s
[2023-06-06 11:36:56] 2023-06-06 10:36:36,330 | INFO     | ..............................
[2023-06-06 11:36:56] 2023-06-06 10:36:36,543 | INFO     | 
[2023-06-06 11:36:56] 2023-06-06 10:36:36,543 | INFO     | job summary report
[2023-06-06 11:36:56] 2023-06-06 10:36:36,543 | INFO     | --------------------------------------------------
[2023-06-06 11:36:56] 2023-06-06 10:36:36,543 | INFO     | PanDA job id: 5866733496
[2023-06-06 11:36:56] 2023-06-06 10:36:36,544 | INFO     | task id: NULL
[2023-06-06 11:36:56] 2023-06-06 10:36:36,544 | INFO     | errors: (none)
[2023-06-06 11:36:56] 2023-06-06 10:36:36,544 | INFO     | status: LOG_TRANSFER = DONE 
[2023-06-06 11:36:56] 2023-06-06 10:36:36,544 | INFO     | pilot state: finished 
[2023-06-06 11:36:56] 2023-06-06 10:36:36,544 | INFO     | transexitcode: 0
[2023-06-06 11:36:56] 2023-06-06 10:36:36,544 | INFO     | exeerrorcode: 0
[2023-06-06 11:36:56] 2023-06-06 10:36:36,544 | INFO     | exeerrordiag: 
[2023-06-06 11:36:56] 2023-06-06 10:36:36,545 | INFO     | exitcode: 0
[2023-06-06 11:36:56] 2023-06-06 10:36:36,545 | INFO     | exitmsg: OK
[2023-06-06 11:36:56] 2023-06-06 10:36:36,545 | INFO     | cpuconsumptiontime: 1069 s
[2023-06-06 11:36:56] 2023-06-06 10:36:36,545 | INFO     | nevents: 2
[2023-06-06 11:36:56] 2023-06-06 10:36:36,545 | INFO     | neventsw: 0
[2023-06-06 11:36:56] 2023-06-06 10:36:36,545 | INFO     | pid: 6763
[2023-06-06 11:36:56] 2023-06-06 10:36:36,545 | INFO     | pgrp: 6763
[2023-06-06 11:36:56] 2023-06-06 10:36:36,546 | INFO     | corecount: 2
[2023-06-06 11:36:56] 2023-06-06 10:36:36,546 | INFO     | event service: False
[2023-06-06 11:36:56] 2023-06-06 10:36:36,546 | INFO     | sizes: {0: 2501751, 1: 2503286, 12: 2503432, 22: 2503460, 33: 2503488, 43: 2503516, 54: 2503672, 65: 2503788, 75: 2503788, 875: 2528666, 1270: 2538018, 1273: 25383
[2023-06-06 11:36:56] 2023-06-06 10:36:36,546 | INFO     | --------------------------------------------------
[2023-06-06 11:36:56] 2023-06-06 10:36:36,546 | INFO     | 
[2023-06-06 11:36:56] 2023-06-06 10:36:36,546 | INFO     | executing command: ls -lF /home/m/BOINC/slots/4
[2023-06-06 11:36:56] 2023-06-06 10:36:36,568 | INFO     | queue jobs had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,569 | INFO     | queue payloads had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,569 | INFO     | queue data_in had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,569 | INFO     | queue data_out had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,569 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,569 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,569 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,570 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,570 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,570 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,570 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,570 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,570 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,570 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,570 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,571 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,571 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,571 | INFO     | queue completed_jobids has 1 job(s)
[2023-06-06 11:36:56] 2023-06-06 10:36:36,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,571 | INFO     | queue messages had 0 job(s) [purged]
[2023-06-06 11:36:56] 2023-06-06 10:36:36,571 | INFO     | job 5866733496 has completed (purged errors)
[2023-06-06 11:36:56] 2023-06-06 10:36:36,571 | INFO     | overall cleanup function is called
[2023-06-06 11:36:56] 2023-06-06 10:36:37,580 | INFO     | --- collectZombieJob: --- 10, [6763]
[2023-06-06 11:36:56] 2023-06-06 10:36:37,580 | INFO     | zombie collector trying to kill pid 6763
[2023-06-06 11:36:56] 2023-06-06 10:36:37,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-06-06 11:36:56] 2023-06-06 10:36:38,586 | INFO     | collected zombie processes
[2023-06-06 11:36:56] 2023-06-06 10:36:38,586 | INFO     | will now attempt to kill all subprocesses of pid=6763
[2023-06-06 11:36:56] 2023-06-06 10:36:38,630 | INFO     | process IDs to be killed: [6763] (in reverse order)
[2023-06-06 11:36:56] 2023-06-06 10:36:38,665 | WARNING  | found no corresponding commands to process id(s)
[2023-06-06 11:36:56] 2023-06-06 10:36:38,665 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-06-06 11:36:56] 2023-06-06 10:36:38,665 | INFO     | ready for new job
[2023-06-06 11:36:56] 2023-06-06 10:36:38,665 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-06-06 11:36:56] 2023-06-06 10:36:38,666 | INFO     | *****************************************
[2023-06-06 11:36:56] 2023-06-06 10:36:38,666 | INFO     | ***  PanDA Pilot version 3.6.0 (108)  ***
[2023-06-06 11:36:56] 2023-06-06 10:36:38,666 | INFO     | *****************************************
[2023-06-06 11:36:56] 2023-06-06 10:36:38,666 | INFO     | 
[2023-06-06 11:36:56] 2023-06-06 10:36:38,683 | INFO     | architecture information:
[2023-06-06 11:36:56] 2023-06-06 10:36:38,684 | INFO     | executing command: cat /etc/os-release
[2023-06-06 11:36:56] 2023-06-06 10:36:38,701 | INFO     | cat /etc/os-release:
[2023-06-06 11:36:56] NAME="CentOS Linux"
[2023-06-06 11:36:56] VERSION="7 (Core)"
[2023-06-06 11:36:56] ID="centos"
[2023-06-06 11:36:56] ID_LIKE="rhel fedora"
[2023-06-06 11:36:56] VERSION_ID="7"
[2023-06-06 11:36:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-06-06 11:36:56] ANSI_COLOR="0;31"
[2023-06-06 11:36:56] CPE_NAME="cpe:/o:centos:centos:7"
[2023-06-06 11:36:56] HOME_URL="https://www.centos.org/"
[2023-06-06 11:36:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-06-06 11:36:56] 
[2023-06-06 11:36:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-06-06 11:36:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-06-06 11:36:56] REDHAT_SUPPORT_PRODUCT="centos"
[2023-06-06 11:36:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-06-06 11:36:56] 
[2023-06-06 11:36:56] 2023-06-06 10:36:38,701 | INFO     | *****************************************
[2023-06-06 11:36:56] 2023-06-06 10:36:39,204 | INFO     | executing command: df -mP /home/m/BOINC/slots/4
[2023-06-06 11:36:56] 2023-06-06 10:36:39,223 | INFO     | sufficient remaining disk space (423635189760 B)
[2023-06-06 11:36:56] 2023-06-06 10:36:39,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-06-06 11:36:56] 2023-06-06 10:36:39,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-06-06 11:36:56] 2023-06-06 10:36:39,224 | INFO     | [job] retrieve thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-06-06 11:36:56] 2023-06-06 10:36:39,224 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-06-06 11:36:56] 2023-06-06 10:36:39,225 | INFO     | aborting loop
[2023-06-06 11:36:56] 2023-06-06 10:36:39,225 | INFO     | found 0 job(s) in 20 queues
[2023-06-06 11:36:56] 2023-06-06 10:36:39,226 | INFO     | [job] job monitor thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-06-06 11:36:56] 2023-06-06 10:36:39,226 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-06-06 11:36:56] 2023-06-06 10:36:39,298 | INFO     | [data] control thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,322 | INFO     | [payload] control thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,692 | INFO     | [payload] failed_post thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,718 | INFO     | [job] validate thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,815 | INFO     | [job] control thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,815 | INFO     | [payload] execute_payloads thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,832 | INFO     | [data] copytool_in thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:39,937 | INFO     | [job] create_data_payload thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:40,068 | INFO     | [payload] validate_pre thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:40,183 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-06-06 11:36:56] 2023-06-06 10:36:40,250 | INFO     | [payload] validate_post thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:40,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-06-06 11:36:56] 2023-06-06 10:36:41,183 | INFO     | [data] copytool_out thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:41,403 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-06-06 11:36:56] 2023-06-06 10:36:41,403 | INFO     | [job] queue monitor thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:43,355 | INFO     | [data] queue_monitor thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:50,240 | INFO     | job.realtimelogging is not enabled
[2023-06-06 11:36:56] 2023-06-06 10:36:50,241 | INFO     | [payload] run_realtimelog thread has finished
[2023-06-06 11:36:56] 2023-06-06 10:36:50,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139753240934208)>', '<ExcThread(monitor, started 139752598664960)>']
[2023-06-06 11:36:56] 2023-06-06 10:36:51,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-06-06 11:36:56] 2023-06-06 10:36:51,276 | INFO     | [monitor] control thread has ended
[2023-06-06 11:36:56] 2023-06-06 10:36:55,986 | INFO     | end of generic workflow (traces error code: 0)
[2023-06-06 11:36:56] 2023-06-06 10:36:55,986 | INFO     | traces error code: 0
[2023-06-06 11:36:56] 2023-06-06 10:36:55,986 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-06-06 11:36:56] 2023-06-06 10:36:56,033 [wrapper] ==== pilot stdout END ====
[2023-06-06 11:36:56] 2023-06-06 10:36:56,038 [wrapper] ==== wrapper stdout RESUME ====
[2023-06-06 11:36:56] 2023-06-06 10:36:56,042 [wrapper] pilotpid: 31586
[2023-06-06 11:36:56] 2023-06-06 10:36:56,047 [wrapper] Pilot exit status: 0
[2023-06-06 11:36:56] 2023-06-06 10:36:56,057 [wrapper] pandaids: 5866733496
[2023-06-06 11:36:56] 2023-06-06 10:36:56,063 [wrapper] apfmon messages muted
[2023-06-06 11:36:56] 2023-06-06 10:36:56,067 [wrapper] Test setup, not cleaning
[2023-06-06 11:36:56] 2023-06-06 10:36:56,070 [wrapper] ==== wrapper stdout END ====
[2023-06-06 11:36:56] 2023-06-06 10:36:56,074 [wrapper] ==== wrapper stderr END ====
[2023-06-06 11:36:56] 2023-06-06 10:36:56,083 [wrapper] wrapperexiting ec=0, duration=1509
[2023-06-06 11:36:56] 2023-06-06 10:36:56,088 [wrapper] apfmon messages muted
[2023-06-06 11:36:56]  *** Error codes and diagnostics ***
[2023-06-06 11:36:56]     "exeErrorCode": 0,
[2023-06-06 11:36:56]     "exeErrorDiag": "",
[2023-06-06 11:36:56]     "pilotErrorCode": 0,
[2023-06-06 11:36:56]     "pilotErrorDiag": "",
[2023-06-06 11:36:56]  *** Listing of results directory ***
[2023-06-06 11:36:56] total 44204
[2023-06-06 11:36:56] -rw-r--r-- 1 m m   410584 Jun  6 10:24 pilot3.tar.gz
[2023-06-06 11:36:56] -rwx------ 1 m m    27811 Jun  6 10:56 runpilot2-wrapper.sh
[2023-06-06 11:36:56] -rw-r--r-- 1 m m     4388 Jun  6 10:56 queuedata.json
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m      107 Jun  6 11:11 wrapper_26015_x86_64-pc-linux-gnu
[2023-06-06 11:36:56] -rwxr-xr-x 1 m m     7986 Jun  6 11:11 run_atlas
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m      112 Jun  6 11:11 job.xml
[2023-06-06 11:36:56] -rw-r--r-- 2 m m    17596 Jun  6 11:11 start_atlas.sh
[2023-06-06 11:36:56] drwxrwx--x 2 m m     4096 Jun  6 11:11 shared
[2023-06-06 11:36:56] -rw-r--r-- 2 m m   422317 Jun  6 11:11 input.tar.gz
[2023-06-06 11:36:56] -rw-r--r-- 2 m m 37595586 Jun  6 11:11 EVNT.04972714._000034.pool.root.1
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m        0 Jun  6 11:11 boinc_lockfile
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m     2797 Jun  6 11:11 pandaJob.out
[2023-06-06 11:36:56] -rw------- 1 m m      424 Jun  6 11:11 setup.sh.local
[2023-06-06 11:36:56] -rw------- 1 m m  1399451 Jun  6 11:12 cric_ddmendpoints.json
[2023-06-06 11:36:56] -rw------- 1 m m  1020145 Jun  6 11:12 agis_schedconf.cvmfs.json
[2023-06-06 11:36:56] drwx------ 4 m m     4096 Jun  6 11:13 pilot3
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m     5732 Jun  6 11:22 init_data.xml
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m      532 Jun  6 11:27 boinc_task_state.xml
[2023-06-06 11:36:56] -rw------- 1 m m  2875958 Jun  6 11:29 Hits.hc_20267990.BOINC-TEST.3102b12f-c5e9-4543-8b36-0cece8ef847e_15976.HITS.pool.root
[2023-06-06 11:36:56] -rw------- 1 m m     1027 Jun  6 11:29 memory_monitor_summary.json
[2023-06-06 11:36:56] -rw------- 1 m m   441878 Jun  6 11:33 3102b12f-c5e9-4543-8b36-0cece8ef847e_15976.job.log.tgz
[2023-06-06 11:36:56] -rw------- 1 m m     9198 Jun  6 11:36 heartbeat.json
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m       25 Jun  6 11:36 wrapper_checkpoint.txt
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m     8192 Jun  6 11:36 boinc_mmap_file
[2023-06-06 11:36:56] -rw------- 1 m m     4108 Jun  6 11:36 pilotlog.txt
[2023-06-06 11:36:56] -rw------- 1 m m   212449 Jun  6 11:36 3102b12f-c5e9-4543-8b36-0cece8ef847e_15976.job.log
[2023-06-06 11:36:56] -rw------- 1 m m      510 Jun  6 11:36 output.list
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m      680 Jun  6 11:36 runtime_log
[2023-06-06 11:36:56] -rw------- 1 m m   675840 Jun  6 11:36 result.tar.gz
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m    11580 Jun  6 11:36 runtime_log.err
[2023-06-06 11:36:56] -rw------- 1 m m      628 Jun  6 11:36 ixfNDm0biQ3n7Olcko1bjSoqABFKDmABFKDm7AsVDmC0KKDmymkSVn.diag
[2023-06-06 11:36:56] -rw-rw-r-- 1 m m    22578 Jun  6 11:36 stderr.txt
[2023-06-06 11:36:56] HITS file was successfully produced:
[2023-06-06 11:36:56] -rw------- 1 m m 2875958 Jun  6 11:29 shared/HITS.pool.root.1
[2023-06-06 11:36:56]  *** Contents of shared directory: ***
[2023-06-06 11:36:56] total 40624
[2023-06-06 11:36:56] -rw-r--r-- 2 m m    17596 Jun  6 11:11 start_atlas.sh
[2023-06-06 11:36:56] -rw-r--r-- 2 m m   422317 Jun  6 11:11 input.tar.gz
[2023-06-06 11:36:56] -rw-r--r-- 2 m m 37595586 Jun  6 11:11 ATLAS.root_0
[2023-06-06 11:36:56] -rw------- 1 m m  2875958 Jun  6 11:29 HITS.pool.root.1
[2023-06-06 11:36:56] -rw------- 1 m m   675840 Jun  6 11:36 result.tar.gz
11:36:57 (28177): run_atlas exited; CPU time 1043.235518
11:36:57 (28177): called boinc_finish(0)

</stderr_txt>
]]>


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