Name | bHMNDmcYqT3n7Olcko1bjSoqABFKDmABFKDm7AsVDmhSLKDmJavBbm_0 |
Workunit | 2312294 |
Created | 15 Jun 2023, 1:02:25 UTC |
Sent | 15 Jun 2023, 1:08:09 UTC |
Report deadline | 22 Jun 2023, 1:08:09 UTC |
Received | 15 Jun 2023, 1:36:18 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 1498 |
Run time | 25 min 42 sec |
CPU time | 11 min 1 sec |
Validate state | Valid |
Credit | 18.38 |
Device peak FLOPS | 13.02 GFLOPS |
Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.50 GB |
Peak swap size | 4.81 GB |
Peak disk usage | 81.77 MB |
<core_client_version>7.4.25</core_client_version> <![CDATA[ <stderr_txt> 02:09:14 (6248): wrapper (7.7.26015): starting 02:09:14 (6248): wrapper: running run_atlas (--nthreads 4) [2023-06-15 02:09:14] Arguments: --nthreads 4 [2023-06-15 02:09:14] Threads: 4 [2023-06-15 02:09:14] Checking for CVMFS [2023-06-15 02:09:17] Probing /cvmfs/atlas.cern.ch... OK [2023-06-15 02:09:23] Probing /cvmfs/atlas-condb.cern.ch... OK [2023-06-15 02:09:23] Running cvmfs_config stat atlas.cern.ch [2023-06-15 02:09:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2023-06-15 02:09:23] 2.9.0.0 6392 0 24636 120157 3 1 3972932 4194304 0 130560 0 0 0.000 827 405 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1 [2023-06-15 02:09:23] CVMFS is ok [2023-06-15 02:09:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2023-06-15 02:09:23] Checking for apptainer binary... [2023-06-15 02:09:23] Using apptainer found in PATH at /usr/bin/apptainer [2023-06-15 02:09:23] Running /usr/bin/apptainer --version [2023-06-15 02:09:24] apptainer version 1.0.3 [2023-06-15 02:09:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2023-06-15 02:09:25] TeeC16 [2023-06-15 02:09:25] apptainer works [2023-06-15 02:09:25] Set ATHENA_PROC_NUMBER=4 [2023-06-15 02:09:25] Set ATHENA_CORE_NUMBER=4 [2023-06-15 02:09:25] Starting ATLAS job with PandaID=5874349881 [2023-06-15 02:09:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2023-06-15 02:34:55] *** The last 200 lines of the pilot log: *** [2023-06-15 02:34:55] 2023-06-15 01:34:10,447 | INFO | monitor loop #213: job 0:5874349881 is in state 'stageout' [2023-06-15 02:34:55] 2023-06-15 01:34:10,495 | INFO | number of running child processes to parent process 17382: 1 [2023-06-15 02:34:55] 2023-06-15 01:34:10,495 | INFO | maximum number of monitored processes: 5 [2023-06-15 02:34:55] 2023-06-15 01:34:12,998 | INFO | monitor loop #214: job 0:5874349881 is in state 'stageout' [2023-06-15 02:34:55] 2023-06-15 01:34:13,035 | INFO | number of running child processes to parent process 17382: 1 [2023-06-15 02:34:55] 2023-06-15 01:34:13,035 | INFO | maximum number of monitored processes: 5 [2023-06-15 02:34:55] 2023-06-15 01:34:15,538 | INFO | monitor loop #215: job 0:5874349881 is in state 'stageout' [2023-06-15 02:34:55] 2023-06-15 01:34:15,584 | INFO | number of running child processes to parent process 17382: 1 [2023-06-15 02:34:55] 2023-06-15 01:34:15,584 | INFO | maximum number of monitored processes: 5 [2023-06-15 02:34:55] 2023-06-15 01:34:18,088 | INFO | monitor loop #216: job 0:5874349881 is in state 'stageout' [2023-06-15 02:34:55] 2023-06-15 01:34:18,132 | INFO | number of running child processes to parent process 17382: 1 [2023-06-15 02:34:55] 2023-06-15 01:34:18,132 | INFO | maximum number of monitored processes: 5 [2023-06-15 02:34:55] 2023-06-15 01:34:20,635 | INFO | monitor loop #217: job 0:5874349881 is in state 'stageout' [2023-06-15 02:34:55] 2023-06-15 01:34:20,674 | INFO | number of running child processes to parent process 17382: 1 [2023-06-15 02:34:55] 2023-06-15 01:34:20,674 | INFO | maximum number of monitored processes: 5 [2023-06-15 02:34:55] 2023-06-15 01:34:23,177 | INFO | monitor loop #218: job 0:5874349881 is in state 'stageout' [2023-06-15 02:34:55] 2023-06-15 01:34:23,212 | INFO | number of running child processes to parent process 17382: 1 [2023-06-15 02:34:55] 2023-06-15 01:34:23,213 | INFO | maximum number of monitored processes: 5 [2023-06-15 02:34:55] 2023-06-15 01:34:25,714 | INFO | monitor loop #219: job 0:5874349881 is in state 'stageout' [2023-06-15 02:34:55] 2023-06-15 01:34:25,715 | INFO | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 780760 B [2023-06-15 02:34:55] 2023-06-15 01:34:25,715 | INFO | payload log (payload.stdout) within allowed size limit (2147483648 B): 9549 B [2023-06-15 02:34:55] 2023-06-15 01:34:25,715 | INFO | executing command: df -mP /home/m/BOINC/slots/3 [2023-06-15 02:34:55] 2023-06-15 01:34:25,728 | INFO | sufficient remaining disk space (422705102848 B) [2023-06-15 02:34:55] 2023-06-15 01:34:25,728 | INFO | work directory size check will use 61362667520 B as a max limit (10% grace limit added) [2023-06-15 02:34:55] 2023-06-15 01:34:25,729 | INFO | size of work directory /home/m/BOINC/slots/3/PanDA_Pilot-5874349881: 1131983 B (within 61362667520 B limit) [2023-06-15 02:34:55] 2023-06-15 01:34:25,729 | INFO | pfn file=/home/m/BOINC/slots/3/PanDA_Pilot-5874349881/output.1.52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.pool.root does not exist (skip from workdir size calculat [2023-06-15 02:34:55] 2023-06-15 01:34:25,729 | INFO | total size of present files: 0 B (workdir size: 1131983 B) [2023-06-15 02:34:55] 2023-06-15 01:34:25,729 | INFO | output file size check: skipping output file /home/m/BOINC/slots/3/PanDA_Pilot-5874349881/output.1.52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.pool.root since it do [2023-06-15 02:34:55] 2023-06-15 01:34:25,776 | INFO | number of running child processes to parent process 17382: 1 [2023-06-15 02:34:55] 2023-06-15 01:34:25,776 | INFO | maximum number of monitored processes: 5 [2023-06-15 02:34:55] 2023-06-15 01:34:26,327 | INFO | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json [2023-06-15 02:34:55] 2023-06-15 01:34:26,462 | WARNING | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: [2023-06-15 02:34:55] 2023-06-15 01:34:26,462 | WARNING | cache file=/home/m/BOINC/slots/3/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/3/agis_ddmendpoints.ag [2023-06-15 02:34:55] 2023-06-15 01:34:26,514 | INFO | transferring file 52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.1.job.log.tgz from /home/m/BOINC/slots/3/PanDA_Pilot-5874349881/52ca65b1-18b6-4602-8396-dfa2867ae3f7_8 [2023-06-15 02:34:55] 2023-06-15 01:34:26,514 | INFO | executing command: /usr/bin/env mv /home/m/BOINC/slots/3/PanDA_Pilot-5874349881/52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.1.job.log.tgz /home/m/BOINC/slots/3/52ca [2023-06-15 02:34:55] 2023-06-15 01:34:26,529 | INFO | Adding to output.list: 52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/d1/80/52ca65b1-18b6- [2023-06-15 02:34:55] 2023-06-15 01:34:26,529 | INFO | executing command: ps aux -q 9907 [2023-06-15 02:34:55] 2023-06-15 01:34:26,546 | INFO | summary of transferred files: [2023-06-15 02:34:55] 2023-06-15 01:34:26,546 | INFO | -- lfn=52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.1.job.log.tgz, status_code=0, status=transferred [2023-06-15 02:34:55] 2023-06-15 01:34:26,547 | INFO | stage-out finished correctly [2023-06-15 02:34:55] 2023-06-15 01:34:26,747 | INFO | finished stage-out for finished payload, adding job to finished_jobs queue [2023-06-15 02:34:55] 2023-06-15 01:34:27,930 | INFO | job 5874349881 has state=finished [2023-06-15 02:34:55] 2023-06-15 01:34:27,931 | INFO | preparing for final server update for job 5874349881 in state='finished' [2023-06-15 02:34:55] 2023-06-15 01:34:27,931 | INFO | this job has now completed (state=finished) [2023-06-15 02:34:55] 2023-06-15 01:34:27,931 | INFO | pilot will not update the server (heartbeat message will be written to file) [2023-06-15 02:34:55] 2023-06-15 01:34:27,931 | INFO | job 5874349881 has finished - writing final server update [2023-06-15 02:34:55] 2023-06-15 01:34:27,932 | WARNING | wrong length of table data, x=[1686791973.0, 1686792034.0, 1686792095.0, 1686792156.0, 1686792217.0, 1686792278.0, 1686792339.0], y=[1427594.0, 1643340.0, 1650284. [2023-06-15 02:34:55] 2023-06-15 01:34:27,932 | INFO | total number of processed events: 2 (read) [2023-06-15 02:34:55] 2023-06-15 01:34:27,951 | INFO | executing command: lscpu [2023-06-15 02:34:55] 2023-06-15 01:34:27,968 | INFO | found 2 cores (2 cores per socket, 1 sockets) [2023-06-15 02:34:55] 2023-06-15 01:34:27,968 | INFO | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo [2023-06-15 02:34:55] 2023-06-15 01:34:27,989 | INFO | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup [2023-06-15 02:34:55] 2023-06-15 01:34:28,282 | INFO | monitor loop #220: job 0:5874349881 is in state 'finished' [2023-06-15 02:34:55] 2023-06-15 01:34:28,283 | INFO | will abort job monitoring soon since job state=finished (job is still in queue) [2023-06-15 02:34:55] 2023-06-15 01:34:30,786 | INFO | monitor loop #221: job 0:5874349881 is in state 'finished' [2023-06-15 02:34:55] 2023-06-15 01:34:30,787 | INFO | will abort job monitoring soon since job state=finished (job is still in queue) [2023-06-15 02:34:55] 2023-06-15 01:34:33,290 | INFO | monitor loop #222: job 0:5874349881 is in state 'finished' [2023-06-15 02:34:55] 2023-06-15 01:34:33,290 | INFO | will abort job monitoring soon since job state=finished (job is still in queue) [2023-06-15 02:34:55] 2023-06-15 01:34:35,793 | INFO | monitor loop #223: job 0:5874349881 is in state 'finished' [2023-06-15 02:34:55] 2023-06-15 01:34:35,794 | INFO | will abort job monitoring soon since job state=finished (job is still in queue) [2023-06-15 02:34:55] 2023-06-15 01:34:37,165 | INFO | executing command: python3 /home/m/BOINC/slots/3/pilot3/pilot/scripts/cpu_arch.py --alg gcc [2023-06-15 02:34:55] 2023-06-15 01:34:37,289 | INFO | using path: /home/m/BOINC/slots/3/PanDA_Pilot-5874349881/memory_monitor_summary.json (trf name=prmon) [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | extracted standard info from prmon json [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | extracted standard memory fields from prmon json [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | .............................. [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | . Timing measurements: [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | . get job = 63 s [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | . initial setup = 71 s [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | . payload setup = 10 s [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | . stage-in = 81 s [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | . payload execution = 835 s [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | . stage-out = 367 s [2023-06-15 02:34:55] 2023-06-15 01:34:37,290 | INFO | .............................. [2023-06-15 02:34:55] 2023-06-15 01:34:37,350 | INFO | [2023-06-15 02:34:55] 2023-06-15 01:34:37,350 | INFO | job summary report [2023-06-15 02:34:55] 2023-06-15 01:34:37,350 | INFO | -------------------------------------------------- [2023-06-15 02:34:55] 2023-06-15 01:34:37,350 | INFO | PanDA job id: 5874349881 [2023-06-15 02:34:55] 2023-06-15 01:34:37,350 | INFO | task id: NULL [2023-06-15 02:34:55] 2023-06-15 01:34:37,350 | INFO | errors: (none) [2023-06-15 02:34:55] 2023-06-15 01:34:37,350 | INFO | status: LOG_TRANSFER = DONE [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | pilot state: finished [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | transexitcode: 0 [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | exeerrorcode: 0 [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | exeerrordiag: [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | exitcode: 0 [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | exitmsg: OK [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | cpuconsumptiontime: 674 s [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | nevents: 2 [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | neventsw: 0 [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | pid: 17382 [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | pgrp: 17382 [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | corecount: 4 [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | event service: False [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | sizes: {0: 2504521, 1: 2504521, 11: 2504695, 22: 2504723, 32: 2504751, 43: 2504779, 54: 2504935, 64: 2504963, 75: 2505019, 86: 2505135, 96: 2505135, 848: 2528104, [2023-06-15 02:34:55] 2023-06-15 01:34:37,351 | INFO | -------------------------------------------------- [2023-06-15 02:34:55] 2023-06-15 01:34:37,352 | INFO | [2023-06-15 02:34:55] 2023-06-15 01:34:37,352 | INFO | executing command: ls -lF /home/m/BOINC/slots/3 [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue jobs had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue payloads had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue data_in had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue data_out had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue current_data_in had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue validated_jobs had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue validated_payloads had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue monitored_payloads had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue finished_jobs had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue finished_payloads had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue finished_data_in had 1 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,366 | INFO | queue finished_data_out had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | queue failed_jobs had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | queue failed_payloads had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | queue failed_data_in had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | queue failed_data_out had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | queue completed_jobs had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | queue completed_jobids has 1 job(s) [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | queue realtimelog_payloads had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | queue messages had 0 job(s) [purged] [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | job 5874349881 has completed (purged errors) [2023-06-15 02:34:55] 2023-06-15 01:34:37,367 | INFO | overall cleanup function is called [2023-06-15 02:34:55] 2023-06-15 01:34:38,374 | INFO | --- collectZombieJob: --- 10, [17382] [2023-06-15 02:34:55] 2023-06-15 01:34:38,374 | INFO | zombie collector trying to kill pid 17382 [2023-06-15 02:34:55] 2023-06-15 01:34:38,374 | INFO | harmless exception when collecting zombies: [Errno 10] No child processes [2023-06-15 02:34:55] 2023-06-15 01:34:39,379 | INFO | collected zombie processes [2023-06-15 02:34:55] 2023-06-15 01:34:39,379 | INFO | will now attempt to kill all subprocesses of pid=17382 [2023-06-15 02:34:55] 2023-06-15 01:34:39,423 | INFO | process IDs to be killed: [17382] (in reverse order) [2023-06-15 02:34:55] 2023-06-15 01:34:39,458 | WARNING | found no corresponding commands to process id(s) [2023-06-15 02:34:55] 2023-06-15 01:34:39,458 | INFO | Do not look for orphan processes in BOINC jobs [2023-06-15 02:34:55] 2023-06-15 01:34:39,459 | INFO | ready for new job [2023-06-15 02:34:55] 2023-06-15 01:34:39,459 | INFO | pilot has finished with previous job - re-establishing logging [2023-06-15 02:34:55] 2023-06-15 01:34:39,460 | INFO | ***************************************** [2023-06-15 02:34:55] 2023-06-15 01:34:39,460 | INFO | *** PanDA Pilot version 3.6.0 (108) *** [2023-06-15 02:34:55] 2023-06-15 01:34:39,460 | INFO | ***************************************** [2023-06-15 02:34:55] 2023-06-15 01:34:39,460 | INFO | [2023-06-15 02:34:55] 2023-06-15 01:34:39,479 | INFO | architecture information: [2023-06-15 02:34:55] 2023-06-15 01:34:39,479 | INFO | executing command: cat /etc/os-release [2023-06-15 02:34:55] 2023-06-15 01:34:39,493 | INFO | cat /etc/os-release: [2023-06-15 02:34:55] NAME="CentOS Linux" [2023-06-15 02:34:55] VERSION="7 (Core)" [2023-06-15 02:34:55] ID="centos" [2023-06-15 02:34:55] ID_LIKE="rhel fedora" [2023-06-15 02:34:55] VERSION_ID="7" [2023-06-15 02:34:55] PRETTY_NAME="CentOS Linux 7 (Core)" [2023-06-15 02:34:55] ANSI_COLOR="0;31" [2023-06-15 02:34:55] CPE_NAME="cpe:/o:centos:centos:7" [2023-06-15 02:34:55] HOME_URL="https://www.centos.org/" [2023-06-15 02:34:55] BUG_REPORT_URL="https://bugs.centos.org/" [2023-06-15 02:34:55] [2023-06-15 02:34:55] CENTOS_MANTISBT_PROJECT="CentOS-7" [2023-06-15 02:34:55] CENTOS_MANTISBT_PROJECT_VERSION="7" [2023-06-15 02:34:55] REDHAT_SUPPORT_PRODUCT="centos" [2023-06-15 02:34:55] REDHAT_SUPPORT_PRODUCT_VERSION="7" [2023-06-15 02:34:55] [2023-06-15 02:34:55] 2023-06-15 01:34:39,493 | INFO | ***************************************** [2023-06-15 02:34:55] 2023-06-15 01:34:39,996 | INFO | executing command: df -mP /home/m/BOINC/slots/3 [2023-06-15 02:34:55] 2023-06-15 01:34:40,009 | INFO | sufficient remaining disk space (422705102848 B) [2023-06-15 02:34:55] 2023-06-15 01:34:40,009 | WARNING | since timefloor is set to 0, pilot was only allowed to run one job [2023-06-15 02:34:55] 2023-06-15 01:34:40,009 | WARNING | setting graceful_stop since proceed_with_getjob() returned False (pilot will end) [2023-06-15 02:34:55] 2023-06-15 01:34:40,009 | INFO | [job] retrieve thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,009 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2023-06-15 02:34:55] 2023-06-15 01:34:40,009 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads) [2023-06-15 02:34:55] 2023-06-15 01:34:40,009 | WARNING | data:copytool_out:received graceful stop - abort after this iteration [2023-06-15 02:34:55] 2023-06-15 01:34:40,010 | INFO | aborting loop [2023-06-15 02:34:55] 2023-06-15 01:34:40,010 | INFO | found 0 job(s) in 20 queues [2023-06-15 02:34:55] 2023-06-15 01:34:40,010 | INFO | [job] job monitor thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,010 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2023-06-15 02:34:55] 2023-06-15 01:34:40,011 | WARNING | will wait for a maximum of 300 s for threads to finish [2023-06-15 02:34:55] 2023-06-15 01:34:40,122 | INFO | [data] control thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,431 | INFO | [job] validate thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,552 | INFO | [data] copytool_in thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,556 | INFO | [job] create_data_payload thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,718 | INFO | [payload] control thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,743 | INFO | [payload] validate_pre thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,795 | INFO | [payload] validate_post thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,847 | INFO | [payload] execute_payloads thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,854 | INFO | [payload] failed_post thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:40,866 | INFO | [job] control thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:41,010 | INFO | [data] copytool_out thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:41,822 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2023-06-15 02:34:55] 2023-06-15 01:34:42,359 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration [2023-06-15 02:34:55] 2023-06-15 01:34:42,359 | INFO | [job] queue monitor thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:44,822 | INFO | [data] queue_monitor thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:50,059 | INFO | job.realtimelogging is not enabled [2023-06-15 02:34:55] 2023-06-15 01:34:50,060 | INFO | [payload] run_realtimelog thread has finished [2023-06-15 02:34:55] 2023-06-15 01:34:50,230 | INFO | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006546302784)>', '<ExcThread(monitor, started 140005993342720)>'] [2023-06-15 02:34:55] 2023-06-15 01:34:51,060 | WARNING | job_aborted has been set - aborting pilot monitoring [2023-06-15 02:34:55] 2023-06-15 01:34:51,060 | INFO | [monitor] control thread has ended [2023-06-15 02:34:55] 2023-06-15 01:34:55,256 | INFO | end of generic workflow (traces error code: 0) [2023-06-15 02:34:55] 2023-06-15 01:34:55,256 | INFO | traces error code: 0 [2023-06-15 02:34:55] 2023-06-15 01:34:55,256 | INFO | pilot has finished (exit code=0, shell exit code=0) [2023-06-15 02:34:55] 2023-06-15 01:34:55,316 [wrapper] ==== pilot stdout END ==== [2023-06-15 02:34:55] 2023-06-15 01:34:55,319 [wrapper] ==== wrapper stdout RESUME ==== [2023-06-15 02:34:55] 2023-06-15 01:34:55,323 [wrapper] pilotpid: 9907 [2023-06-15 02:34:55] 2023-06-15 01:34:55,326 [wrapper] Pilot exit status: 0 [2023-06-15 02:34:55] 2023-06-15 01:34:55,336 [wrapper] pandaids: 5874349881 [2023-06-15 02:34:55] 2023-06-15 01:34:55,342 [wrapper] apfmon messages muted [2023-06-15 02:34:55] 2023-06-15 01:34:55,345 [wrapper] Test setup, not cleaning [2023-06-15 02:34:55] 2023-06-15 01:34:55,348 [wrapper] ==== wrapper stdout END ==== [2023-06-15 02:34:55] 2023-06-15 01:34:55,351 [wrapper] ==== wrapper stderr END ==== [2023-06-15 02:34:55] 2023-06-15 01:34:55,357 [wrapper] wrapperexiting ec=0, duration=1529 [2023-06-15 02:34:55] 2023-06-15 01:34:55,360 [wrapper] apfmon messages muted [2023-06-15 02:34:55] *** Error codes and diagnostics *** [2023-06-15 02:34:55] "exeErrorCode": 0, [2023-06-15 02:34:55] "exeErrorDiag": "", [2023-06-15 02:34:55] "pilotErrorCode": 0, [2023-06-15 02:34:55] "pilotErrorDiag": "", [2023-06-15 02:34:55] *** Listing of results directory *** [2023-06-15 02:34:55] total 44740 [2023-06-15 02:34:55] -rw-r--r-- 1 m m 410584 Jun 15 01:35 pilot3.tar.gz [2023-06-15 02:34:55] -rw-r--r-- 1 m m 4388 Jun 15 02:00 queuedata.json [2023-06-15 02:34:55] -rwx------ 1 m m 27012 Jun 15 02:02 runpilot2-wrapper.sh [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 107 Jun 15 02:09 wrapper_26015_x86_64-pc-linux-gnu [2023-06-15 02:34:55] -rwxr-xr-x 1 m m 7986 Jun 15 02:09 run_atlas [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 112 Jun 15 02:09 job.xml [2023-06-15 02:34:55] -rw-r--r-- 2 m m 17604 Jun 15 02:09 start_atlas.sh [2023-06-15 02:34:55] drwxrwx--x 2 m m 4096 Jun 15 02:09 shared [2023-06-15 02:34:55] -rw-r--r-- 2 m m 421981 Jun 15 02:09 input.tar.gz [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 5726 Jun 15 02:09 init_data.xml [2023-06-15 02:34:55] -rw-r--r-- 2 m m 37965264 Jun 15 02:09 EVNT.04972714._000027.pool.root.1 [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 0 Jun 15 02:09 boinc_lockfile [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 2754 Jun 15 02:09 pandaJob.out [2023-06-15 02:34:55] -rw------- 1 m m 424 Jun 15 02:09 setup.sh.local [2023-06-15 02:34:55] -rw------- 1 m m 1401610 Jun 15 02:11 cric_ddmendpoints.json [2023-06-15 02:34:55] -rw------- 1 m m 1020335 Jun 15 02:11 agis_schedconf.cvmfs.json [2023-06-15 02:34:55] drwx------ 4 m m 4096 Jun 15 02:12 pilot3 [2023-06-15 02:34:55] -rw------- 1 m m 1808621 Jun 15 02:28 output.1.52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.pool.root [2023-06-15 02:34:55] -rw------- 1 m m 1014 Jun 15 02:28 memory_monitor_summary.json [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 533 Jun 15 02:28 boinc_task_state.xml [2023-06-15 02:34:55] -rw------- 1 m m 162761 Jun 15 02:30 52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.1.job.log.tgz [2023-06-15 02:34:55] -rw------- 1 m m 8755 Jun 15 02:34 heartbeat.json [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 25 Jun 15 02:34 wrapper_checkpoint.txt [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 8192 Jun 15 02:34 boinc_mmap_file [2023-06-15 02:34:55] -rw------- 1 m m 4108 Jun 15 02:34 pilotlog.txt [2023-06-15 02:34:55] -rw------- 1 m m 204948 Jun 15 02:34 52ca65b1-18b6-4602-8396-dfa2867ae3f7_81752.1.job.log [2023-06-15 02:34:55] -rw------- 1 m m 464 Jun 15 02:34 output.list [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 748 Jun 15 02:34 runtime_log [2023-06-15 02:34:55] -rw------- 1 m m 2201600 Jun 15 02:34 result.tar.gz [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 11905 Jun 15 02:34 runtime_log.err [2023-06-15 02:34:55] -rw------- 1 m m 627 Jun 15 02:34 bHMNDmcYqT3n7Olcko1bjSoqABFKDmABFKDm7AsVDmhSLKDmJavBbm.diag [2023-06-15 02:34:55] -rw-rw-r-- 1 m m 23010 Jun 15 02:34 stderr.txt [2023-06-15 02:34:55] HITS file was successfully produced: [2023-06-15 02:34:55] -rw------- 1 m m 1808621 Jun 15 02:28 shared/HITS.pool.root.1 [2023-06-15 02:34:55] *** Contents of shared directory: *** [2023-06-15 02:34:55] total 41432 [2023-06-15 02:34:55] -rw-r--r-- 2 m m 17604 Jun 15 02:09 start_atlas.sh [2023-06-15 02:34:55] -rw-r--r-- 2 m m 421981 Jun 15 02:09 input.tar.gz [2023-06-15 02:34:55] -rw-r--r-- 2 m m 37965264 Jun 15 02:09 ATLAS.root_0 [2023-06-15 02:34:55] -rw------- 1 m m 1808621 Jun 15 02:28 HITS.pool.root.1 [2023-06-15 02:34:55] -rw------- 1 m m 2201600 Jun 15 02:34 result.tar.gz 02:34:56 (6248): run_atlas exited; CPU time 661.928476 02:34:56 (6248): called boinc_finish(0) </stderr_txt> ]]>
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