Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
04:29:11 (6922): wrapper (7.7.26015): starting
04:29:11 (6922): wrapper: running run_atlas (--nthreads 4)
[2023-06-21 04:29:11] Arguments: --nthreads 4
[2023-06-21 04:29:11] Threads: 4
[2023-06-21 04:29:11] Checking for CVMFS
[2023-06-21 04:29:14] Probing /cvmfs/atlas.cern.ch... OK
[2023-06-21 04:29:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-06-21 04:29:19] Running cvmfs_config stat atlas.cern.ch
[2023-06-21 04:29:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-06-21 04:29:19] 2.9.0.0 7067 0 24572 120386 3 1 2857471 4194305 0 130560 0 0 0.000 827 315 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-06-21 04:29:19] CVMFS is ok
[2023-06-21 04:29:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-06-21 04:29:19] Checking for apptainer binary...
[2023-06-21 04:29:19] Using apptainer found in PATH at /usr/bin/apptainer
[2023-06-21 04:29:19] Running /usr/bin/apptainer --version
[2023-06-21 04:29:20] apptainer version 1.0.3
[2023-06-21 04:29:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-06-21 04:29:21] TeeC16
[2023-06-21 04:29:21] apptainer works
[2023-06-21 04:29:21] Set ATHENA_PROC_NUMBER=4
[2023-06-21 04:29:21] Set ATHENA_CORE_NUMBER=4
[2023-06-21 04:29:21] Starting ATLAS job with PandaID=5883180257
[2023-06-21 04:29:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-06-21 04:58:24]  *** The last 200 lines of the pilot log: ***
[2023-06-21 04:58:24] 2023-06-21 03:57:16,606 | INFO     | transferring file 39c0cc98-385c-4461-b1a0-386636450f7c_57003.1.job.log.tgz from /home/m/BOINC/slots/0/PanDA_Pilot-5883180257/39c0cc98-385c-4461-b1a0-386636450f7c_5
[2023-06-21 04:58:24] 2023-06-21 03:57:16,606 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/0/PanDA_Pilot-5883180257/39c0cc98-385c-4461-b1a0-386636450f7c_57003.1.job.log.tgz /home/m/BOINC/slots/0/39c0
[2023-06-21 04:58:24] 2023-06-21 03:57:16,621 | INFO     | Adding to output.list: 39c0cc98-385c-4461-b1a0-386636450f7c_57003.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/0b/7a/39c0cc98-385c-
[2023-06-21 04:58:24] 2023-06-21 03:57:16,622 | INFO     | executing command: ps aux -q 10603
[2023-06-21 04:58:24] 2023-06-21 03:57:16,639 | INFO     | summary of transferred files:
[2023-06-21 04:58:24] 2023-06-21 03:57:16,639 | INFO     |  -- lfn=39c0cc98-385c-4461-b1a0-386636450f7c_57003.1.job.log.tgz, status_code=0, status=transferred
[2023-06-21 04:58:24] 2023-06-21 03:57:16,639 | INFO     | stage-out finished correctly
[2023-06-21 04:58:24] 2023-06-21 03:57:17,306 | INFO     | monitor loop #239: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:17,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:19,807 | INFO     | monitor loop #240: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:19,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:19,854 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-06-21 04:58:24] 2023-06-21 03:57:21,239 | INFO     | job 5883180257 has state=finished
[2023-06-21 04:58:24] 2023-06-21 03:57:21,239 | INFO     | preparing for final server update for job 5883180257 in state='finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:21,240 | INFO     | this job has now completed (state=finished)
[2023-06-21 04:58:24] 2023-06-21 03:57:21,240 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-06-21 04:58:24] 2023-06-21 03:57:21,240 | INFO     | job 5883180257 has finished - writing final server update
[2023-06-21 04:58:24] 2023-06-21 03:57:21,241 | INFO     | fitting pss+swap vs Time
[2023-06-21 04:58:24] 2023-06-21 03:57:21,242 | INFO     | current memory leak: 2775.68 B/s (using 11 data points, chi2=0.14)
[2023-06-21 04:58:24] 2023-06-21 03:57:21,242 | INFO     | total number of processed events: 2 (read)
[2023-06-21 04:58:24] 2023-06-21 03:57:21,260 | INFO     | executing command: lscpu
[2023-06-21 04:58:24] 2023-06-21 03:57:21,272 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-06-21 04:58:24] 2023-06-21 03:57:21,272 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-06-21 04:58:24] 2023-06-21 03:57:21,294 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-06-21 04:58:24] 2023-06-21 03:57:22,310 | INFO     | monitor loop #241: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:22,310 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:24,813 | INFO     | monitor loop #242: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:24,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:27,317 | INFO     | monitor loop #243: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:27,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:29,818 | INFO     | monitor loop #244: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:29,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:32,321 | INFO     | monitor loop #245: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:32,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:34,822 | INFO     | monitor loop #246: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:34,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:37,324 | INFO     | monitor loop #247: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:37,325 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:39,827 | INFO     | monitor loop #248: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:39,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:42,330 | INFO     | monitor loop #249: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:42,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:44,833 | INFO     | monitor loop #250: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:44,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:47,336 | INFO     | monitor loop #251: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:47,337 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:49,840 | INFO     | monitor loop #252: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:49,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:52,341 | INFO     | monitor loop #253: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:52,341 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:53,785 | INFO     | 1656s have passed since pilot start
[2023-06-21 04:58:24] 2023-06-21 03:57:54,843 | INFO     | monitor loop #254: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:54,843 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:57,346 | INFO     | monitor loop #255: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:57,346 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:57:59,848 | INFO     | monitor loop #256: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:57:59,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:58:02,351 | INFO     | monitor loop #257: job 0:5883180257 is in state 'finished'
[2023-06-21 04:58:24] 2023-06-21 03:58:02,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-06-21 04:58:24] 2023-06-21 03:58:04,032 | INFO     | executing command: python3 /home/m/BOINC/slots/0/pilot3/pilot/scripts/cpu_arch.py --alg gcc
[2023-06-21 04:58:24] 2023-06-21 03:58:04,141 | INFO     | using path: /home/m/BOINC/slots/0/PanDA_Pilot-5883180257/memory_monitor_summary.json (trf name=prmon)
[2023-06-21 04:58:24] 2023-06-21 03:58:04,143 | INFO     | extracted standard info from prmon json
[2023-06-21 04:58:24] 2023-06-21 03:58:04,143 | INFO     | extracted standard memory fields from prmon json
[2023-06-21 04:58:24] 2023-06-21 03:58:04,143 | INFO     | ..............................
[2023-06-21 04:58:24] 2023-06-21 03:58:04,143 | INFO     | . Timing measurements:
[2023-06-21 04:58:24] 2023-06-21 03:58:04,143 | INFO     | . get job = 61 s
[2023-06-21 04:58:24] 2023-06-21 03:58:04,143 | INFO     | . initial setup = 63 s
[2023-06-21 04:58:24] 2023-06-21 03:58:04,144 | INFO     | . payload setup = 29 s
[2023-06-21 04:58:24] 2023-06-21 03:58:04,144 | INFO     | . stage-in = 38 s
[2023-06-21 04:58:24] 2023-06-21 03:58:04,144 | INFO     | . payload execution = 1045 s
[2023-06-21 04:58:24] 2023-06-21 03:58:04,144 | INFO     | . stage-out = 369 s
[2023-06-21 04:58:24] 2023-06-21 03:58:04,144 | INFO     | ..............................
[2023-06-21 04:58:24] 2023-06-21 03:58:04,340 | INFO     | 
[2023-06-21 04:58:24] 2023-06-21 03:58:04,340 | INFO     | job summary report
[2023-06-21 04:58:24] 2023-06-21 03:58:04,340 | INFO     | --------------------------------------------------
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | PanDA job id: 5883180257
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | task id: NULL
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | errors: (none)
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | status: LOG_TRANSFER = DONE 
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | pilot state: finished 
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | transexitcode: 0
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | exeerrorcode: 0
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | exeerrordiag: 
[2023-06-21 04:58:24] 2023-06-21 03:58:04,341 | INFO     | exitcode: 0
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | exitmsg: OK
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | cpuconsumptiontime: 219 s
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | nevents: 2
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | neventsw: 0
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | pid: 17347
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | pgrp: 17347
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | corecount: 4
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | event service: False
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | sizes: {0: 2499151, 1: 2500686, 12: 2500832, 22: 2500860, 33: 2500888, 43: 2501132, 1078: 2522799, 1449: 2532043, 1452: 2532099, 1496: 2532321}
[2023-06-21 04:58:24] 2023-06-21 03:58:04,342 | INFO     | --------------------------------------------------
[2023-06-21 04:58:24] 2023-06-21 03:58:04,343 | INFO     | 
[2023-06-21 04:58:24] 2023-06-21 03:58:04,343 | INFO     | executing command: ls -lF /home/m/BOINC/slots/0
[2023-06-21 04:58:24] 2023-06-21 03:58:04,356 | INFO     | queue jobs had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue payloads had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue data_in had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue data_out had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,357 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | queue completed_jobids has 1 job(s)
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | queue messages had 0 job(s) [purged]
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | job 5883180257 has completed (purged errors)
[2023-06-21 04:58:24] 2023-06-21 03:58:04,358 | INFO     | overall cleanup function is called
[2023-06-21 04:58:24] 2023-06-21 03:58:05,365 | INFO     | --- collectZombieJob: --- 10, [17347]
[2023-06-21 04:58:24] 2023-06-21 03:58:05,365 | INFO     | zombie collector trying to kill pid 17347
[2023-06-21 04:58:24] 2023-06-21 03:58:05,365 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-06-21 04:58:24] 2023-06-21 03:58:06,370 | INFO     | collected zombie processes
[2023-06-21 04:58:24] 2023-06-21 03:58:06,370 | INFO     | will now attempt to kill all subprocesses of pid=17347
[2023-06-21 04:58:24] 2023-06-21 03:58:06,422 | INFO     | process IDs to be killed: [17347] (in reverse order)
[2023-06-21 04:58:24] 2023-06-21 03:58:06,457 | WARNING  | found no corresponding commands to process id(s)
[2023-06-21 04:58:24] 2023-06-21 03:58:06,457 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-06-21 04:58:24] 2023-06-21 03:58:06,457 | INFO     | ready for new job
[2023-06-21 04:58:24] 2023-06-21 03:58:06,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-06-21 04:58:24] 2023-06-21 03:58:06,458 | INFO     | *****************************************
[2023-06-21 04:58:24] 2023-06-21 03:58:06,458 | INFO     | ***  PanDA Pilot version 3.6.0 (108)  ***
[2023-06-21 04:58:24] 2023-06-21 03:58:06,459 | INFO     | *****************************************
[2023-06-21 04:58:24] 2023-06-21 03:58:06,459 | INFO     | 
[2023-06-21 04:58:24] 2023-06-21 03:58:06,475 | INFO     | architecture information:
[2023-06-21 04:58:24] 2023-06-21 03:58:06,476 | INFO     | executing command: cat /etc/os-release
[2023-06-21 04:58:24] 2023-06-21 03:58:06,487 | INFO     | cat /etc/os-release:
[2023-06-21 04:58:24] NAME="CentOS Linux"
[2023-06-21 04:58:24] VERSION="7 (Core)"
[2023-06-21 04:58:24] ID="centos"
[2023-06-21 04:58:24] ID_LIKE="rhel fedora"
[2023-06-21 04:58:24] VERSION_ID="7"
[2023-06-21 04:58:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-06-21 04:58:24] ANSI_COLOR="0;31"
[2023-06-21 04:58:24] CPE_NAME="cpe:/o:centos:centos:7"
[2023-06-21 04:58:24] HOME_URL="https://www.centos.org/"
[2023-06-21 04:58:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-06-21 04:58:24] 
[2023-06-21 04:58:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-06-21 04:58:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-06-21 04:58:24] REDHAT_SUPPORT_PRODUCT="centos"
[2023-06-21 04:58:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-06-21 04:58:24] 
[2023-06-21 04:58:24] 2023-06-21 03:58:06,487 | INFO     | *****************************************
[2023-06-21 04:58:24] 2023-06-21 03:58:06,990 | INFO     | executing command: df -mP /home/m/BOINC/slots/0
[2023-06-21 04:58:24] 2023-06-21 03:58:07,001 | INFO     | sufficient remaining disk space (423060570112 B)
[2023-06-21 04:58:24] 2023-06-21 03:58:07,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-06-21 04:58:24] 2023-06-21 03:58:07,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-06-21 04:58:24] 2023-06-21 03:58:07,002 | INFO     | [job] retrieve thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-06-21 04:58:24] 2023-06-21 03:58:07,002 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-06-21 04:58:24] 2023-06-21 03:58:07,002 | INFO     | found 0 job(s) in 20 queues
[2023-06-21 04:58:24] 2023-06-21 03:58:07,002 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-06-21 04:58:24] 2023-06-21 03:58:07,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-06-21 04:58:24] 2023-06-21 03:58:07,025 | INFO     | [payload] failed_post thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,089 | INFO     | [job] control thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,093 | INFO     | [data] control thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,258 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-06-21 04:58:24] 2023-06-21 03:58:07,282 | INFO     | [payload] control thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,363 | WARNING  | job monitor detected an abort_job request (signal=None)
[2023-06-21 04:58:24] 2023-06-21 03:58:07,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-06-21 04:58:24] 2023-06-21 03:58:07,363 | INFO     | will abort loop
[2023-06-21 04:58:24] 2023-06-21 03:58:07,363 | INFO     | [job] job monitor thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,562 | INFO     | [job] validate thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,709 | INFO     | [job] create_data_payload thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,796 | INFO     | [payload] validate_post thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:07,811 | INFO     | [payload] validate_pre thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:08,158 | INFO     | [data] copytool_in thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:08,258 | INFO     | [data] copytool_out thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:08,332 | INFO     | [payload] execute_payloads thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:09,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-06-21 04:58:24] 2023-06-21 03:58:09,273 | INFO     | [job] queue monitor thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:10,003 | INFO     | [data] queue_monitor thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:17,887 | INFO     | job.realtimelogging is not enabled
[2023-06-21 04:58:24] 2023-06-21 03:58:17,887 | INFO     | [payload] run_realtimelog thread has finished
[2023-06-21 04:58:24] 2023-06-21 03:58:18,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640344946496)>', '<ExcThread(monitor, started 139639654446848)>']
[2023-06-21 04:58:24] 2023-06-21 03:58:19,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-06-21 04:58:24] 2023-06-21 03:58:19,057 | INFO     | [monitor] control thread has ended
[2023-06-21 04:58:24] 2023-06-21 03:58:23,895 | INFO     | end of generic workflow (traces error code: 0)
[2023-06-21 04:58:24] 2023-06-21 03:58:23,895 | INFO     | traces error code: 0
[2023-06-21 04:58:24] 2023-06-21 03:58:23,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-06-21 04:58:24] 2023-06-21 03:58:23,948 [wrapper] ==== pilot stdout END ====
[2023-06-21 04:58:24] 2023-06-21 03:58:23,951 [wrapper] ==== wrapper stdout RESUME ====
[2023-06-21 04:58:24] 2023-06-21 03:58:23,954 [wrapper] pilotpid: 10603
[2023-06-21 04:58:24] 2023-06-21 03:58:23,957 [wrapper] Pilot exit status: 0
[2023-06-21 04:58:24] 2023-06-21 03:58:23,968 [wrapper] pandaids: 5883180257
[2023-06-21 04:58:24] 2023-06-21 03:58:23,974 [wrapper] apfmon messages muted
[2023-06-21 04:58:24] 2023-06-21 03:58:23,978 [wrapper] Test setup, not cleaning
[2023-06-21 04:58:24] 2023-06-21 03:58:23,981 [wrapper] ==== wrapper stdout END ====
[2023-06-21 04:58:24] 2023-06-21 03:58:23,984 [wrapper] ==== wrapper stderr END ====
[2023-06-21 04:58:24] 2023-06-21 03:58:23,990 [wrapper] wrapperexiting ec=0, duration=1741
[2023-06-21 04:58:24] 2023-06-21 03:58:23,993 [wrapper] apfmon messages muted
[2023-06-21 04:58:24]  *** Error codes and diagnostics ***
[2023-06-21 04:58:24]     "exeErrorCode": 0,
[2023-06-21 04:58:24]     "exeErrorDiag": "",
[2023-06-21 04:58:24]     "pilotErrorCode": 0,
[2023-06-21 04:58:24]     "pilotErrorDiag": "",
[2023-06-21 04:58:24]  *** Listing of results directory ***
[2023-06-21 04:58:24] total 43040
[2023-06-21 04:58:24] -rw-r--r-- 1 m m   410584 Jun 21 03:36 pilot3.tar.gz
[2023-06-21 04:58:24] -rw-r--r-- 1 m m     4388 Jun 21 04:24 queuedata.json
[2023-06-21 04:58:24] -rwx------ 1 m m    27012 Jun 21 04:24 runpilot2-wrapper.sh
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m      107 Jun 21 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2023-06-21 04:58:24] -rwxr-xr-x 1 m m     7986 Jun 21 04:29 run_atlas
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m      112 Jun 21 04:29 job.xml
[2023-06-21 04:58:24] -rw-r--r-- 2 m m    17604 Jun 21 04:29 start_atlas.sh
[2023-06-21 04:58:24] drwxrwx--x 2 m m     4096 Jun 21 04:29 shared
[2023-06-21 04:58:24] -rw-r--r-- 2 m m   421924 Jun 21 04:29 input.tar.gz
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m     5728 Jun 21 04:29 init_data.xml
[2023-06-21 04:58:24] -rw-r--r-- 2 m m 37438704 Jun 21 04:29 EVNT.04972714._000033.pool.root.1
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m        0 Jun 21 04:29 boinc_lockfile
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m     2680 Jun 21 04:29 pandaJob.out
[2023-06-21 04:58:24] -rw------- 1 m m      424 Jun 21 04:29 setup.sh.local
[2023-06-21 04:58:24] -rw------- 1 m m  1399895 Jun 21 04:31 cric_ddmendpoints.json
[2023-06-21 04:58:24] -rw------- 1 m m  1017749 Jun 21 04:31 agis_schedconf.cvmfs.json
[2023-06-21 04:58:24] drwx------ 4 m m     4096 Jun 21 04:32 pilot3
[2023-06-21 04:58:24] -rw------- 1 m m  1170912 Jun 21 04:50 output.1.39c0cc98-385c-4461-b1a0-386636450f7c_57003.pool.root
[2023-06-21 04:58:24] -rw------- 1 m m     1025 Jun 21 04:51 memory_monitor_summary.json
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m      533 Jun 21 04:51 boinc_task_state.xml
[2023-06-21 04:58:24] -rw------- 1 m m   180825 Jun 21 04:54 39c0cc98-385c-4461-b1a0-386636450f7c_57003.1.job.log.tgz
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m     8192 Jun 21 04:57 boinc_mmap_file
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m       25 Jun 21 04:57 wrapper_checkpoint.txt
[2023-06-21 04:58:24] -rw------- 1 m m     7090 Jun 21 04:58 heartbeat.json
[2023-06-21 04:58:24] -rw------- 1 m m     4203 Jun 21 04:58 pilotlog.txt
[2023-06-21 04:58:24] -rw------- 1 m m   228892 Jun 21 04:58 39c0cc98-385c-4461-b1a0-386636450f7c_57003.1.job.log
[2023-06-21 04:58:24] -rw------- 1 m m      464 Jun 21 04:58 output.list
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m      748 Jun 21 04:58 runtime_log
[2023-06-21 04:58:24] -rw------- 1 m m  1597440 Jun 21 04:58 result.tar.gz
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m    11905 Jun 21 04:58 runtime_log.err
[2023-06-21 04:58:24] -rw------- 1 m m      627 Jun 21 04:58 896MDmrd3V3n7Olcko1bjSoqABFKDmABFKDm7AsVDm7rLKDmDpxIdm.diag
[2023-06-21 04:58:24] -rw-rw-r-- 1 m m    22720 Jun 21 04:58 stderr.txt
[2023-06-21 04:58:24] HITS file was successfully produced:
[2023-06-21 04:58:24] -rw------- 1 m m 1170912 Jun 21 04:50 shared/HITS.pool.root.1
[2023-06-21 04:58:24]  *** Contents of shared directory: ***
[2023-06-21 04:58:24] total 39704
[2023-06-21 04:58:24] -rw-r--r-- 2 m m    17604 Jun 21 04:29 start_atlas.sh
[2023-06-21 04:58:24] -rw-r--r-- 2 m m   421924 Jun 21 04:29 input.tar.gz
[2023-06-21 04:58:24] -rw-r--r-- 2 m m 37438704 Jun 21 04:29 ATLAS.root_0
[2023-06-21 04:58:24] -rw------- 1 m m  1170912 Jun 21 04:50 HITS.pool.root.1
[2023-06-21 04:58:24] -rw------- 1 m m  1597440 Jun 21 04:58 result.tar.gz
04:58:25 (6922): run_atlas exited; CPU time 204.072328
04:58:25 (6922): called boinc_finish(0)

</stderr_txt>
]]>

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