Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-06-28 00:51:52 (14312): Detected: vboxwrapper 26206
2023-06-28 00:51:52 (14312): Detected: BOINC client v7.22.2
2023-06-28 00:51:53 (14312): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2023-06-28 00:51:53 (14312): Successfully copied 'init_data.xml' to the shared directory.
2023-06-28 00:51:54 (14312): Create VM. (boinc_fb881ae30a5bac73, slot#5)
2023-06-28 00:51:54 (14312): Setting Memory Size for VM. (4100MB)
2023-06-28 00:51:54 (14312): Setting CPU Count for VM. (1)
2023-06-28 00:51:55 (14312): Setting Chipset Options for VM.
2023-06-28 00:51:55 (14312): Setting Graphics Controller Options for VM.
2023-06-28 00:51:55 (14312): Setting Boot Options for VM.
2023-06-28 00:51:56 (14312): Setting Network Configuration for NAT.
2023-06-28 00:51:56 (14312): Enabling VM Network Access.
2023-06-28 00:51:56 (14312): Disabling USB Support for VM.
2023-06-28 00:51:56 (14312): Disabling COM Port Support for VM.
2023-06-28 00:51:57 (14312): Disabling LPT Port Support for VM.
2023-06-28 00:51:57 (14312): Disabling Audio Support for VM.
2023-06-28 00:51:57 (14312): Disabling Clipboard Support for VM.
2023-06-28 00:51:57 (14312): Disabling Drag and Drop Support for VM.
2023-06-28 00:51:58 (14312): Adding storage controller(s) to VM.
2023-06-28 00:51:58 (14312): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-06-28 00:52:01 (14312): Adding VirtualBox Guest Additions to VM.
2023-06-28 00:52:01 (14312): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-06-28 00:52:01 (14312): forwarding host port 60631 to guest port 80
2023-06-28 00:52:02 (14312): Enabling remote desktop for VM.
2023-06-28 00:52:02 (14312): Enabling shared directory for VM.
2023-06-28 00:52:03 (14312): Starting VM using VBoxManage interface. (boinc_fb881ae30a5bac73, slot#5)
2023-06-28 00:52:09 (14312): Successfully started VM. (PID = '19352')
2023-06-28 00:52:09 (14312): Reporting VM Process ID to BOINC.
2023-06-28 00:52:09 (14312): Guest Log: BIOS: VirtualBox 7.0.8
2023-06-28 00:52:09 (14312): Guest Log: CPUID EDX: 0x178bfbff
2023-06-28 00:52:09 (14312): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-06-28 00:52:09 (14312): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-06-28 00:52:09 (14312): VM state change detected. (old = 'poweredoff', new = 'running')
2023-06-28 00:52:09 (14312): Detected: Web Application Enabled (http://localhost:60631)
2023-06-28 00:52:09 (14312): Detected: Remote Desktop Enabled (localhost:60632)
2023-06-28 00:52:09 (14312): Preference change detected
2023-06-28 00:52:09 (14312): Setting CPU throttle for VM. (90%)
2023-06-28 00:52:10 (14312): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2023-06-28 00:52:11 (14312): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-06-28 00:52:11 (14312): Guest Log: BIOS: Booting from Hard Disk...
2023-06-28 00:52:13 (14312): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-06-28 00:52:13 (14312): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-06-28 00:52:13 (14312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-06-28 00:52:17 (14312): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-06-28 00:52:17 (14312): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-06-28 00:52:24 (14312): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-06-28 00:52:24 (14312): Guest Log: 00:00:00.000136 main     Log opened 2023-06-28T00:52:22.604439000Z
2023-06-28 00:52:24 (14312): Guest Log: 00:00:00.000261 main     OS Product: Linux
2023-06-28 00:52:24 (14312): Guest Log: 00:00:00.000283 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-06-28 00:52:24 (14312): Guest Log: 00:00:00.000301 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-06-28 00:52:24 (14312): Guest Log: 00:00:00.000318 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-06-28 00:52:24 (14312): Guest Log: 00:00:00.000318 main     Process ID: 1243
2023-06-28 00:52:24 (14312): Guest Log: 00:00:00.000318 main     Package type: LINUX_64BITS_GENERIC
2023-06-28 00:52:24 (14312): Guest Log: 00:00:00.001758 main     5.2.32 r132073 started. Verbose level = 0
2023-06-28 00:52:25 (14312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-06-28 00:52:25 (14312): Guest Log: [INFO] Mounting shared directory
2023-06-28 00:52:25 (14312): Guest Log: [INFO] Checking for init_data.xml
2023-06-28 00:52:34 (14312): Guest Log: 00:00:10.020080 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 199 772 000ns (GuestNow=1 687 927 954 823 549 000 ns GuestLast=1 687 913 542 623 777 000 ns fSetTimeLastLoop=true )
2023-06-28 00:52:46 (14312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-06-28 00:52:46 (14312): Guest Log: [INFO] Detected branch: dev
2023-06-28 00:52:52 (14312): Guest Log: This is the dev version of the ATLAS job wrapper
2023-06-28 00:52:52 (14312): Guest Log: Copying input files
2023-06-28 00:52:52 (14312): Guest Log: Copied input files into RunAtlas.
2023-06-28 00:52:52 (14312): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-06-28 00:52:52 (14312): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-06-28 00:52:52 (14312): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-06-28 00:52:52 (14312): Guest Log: Further information can be found at the LHC@home message board.
2023-06-28 00:53:09 (14312): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-06-28 00:53:22 (14312): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-06-28 00:53:22 (14312): Guest Log: 2.6.3.0 1516 0 32108 120658 4 1 3116385 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
2023-06-28 00:53:22 (14312): Guest Log: copied the webapp to /var/www
2023-06-28 00:53:22 (14312): Guest Log: core_number=1
2023-06-28 00:53:22 (14312): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-06-28 00:53:22 (14312): Guest Log:  *** Starting ATLAS job. (PandaID=5890655656 taskID=NULL&cor) ***
2023-06-28 01:12:56 (14312): Guest Log:  *** Job finished ***
2023-06-28 01:12:56 (14312): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-06-28 01:12:56 (14312): Guest Log:  *** Error codes and diagnostics ***
2023-06-28 01:12:56 (14312): Guest Log:     "exeErrorCode": 65,
2023-06-28 01:12:56 (14312): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2023-06-28 01:12:56 (14312): Guest Log:     "pilotErrorCode": 1305,
2023-06-28 01:12:56 (14312): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-06-28 05:06:03,904 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
2023-06-28 01:12:56 (14312): Guest Log:  *** Listing of results directory ***
2023-06-28 01:12:56 (14312): Guest Log: total 3760
2023-06-28 01:12:56 (14312): Guest Log: -rw-r--r--. 1 atlas atlas  410584 Jun 28 04:29 pilot3.tar.gz
2023-06-28 01:12:56 (14312): Guest Log: -rwx------. 1 atlas atlas   27012 Jun 28 04:50 runpilot2-wrapper.sh
2023-06-28 01:12:56 (14312): Guest Log: -rw-r--r--. 1 atlas atlas    4388 Jun 28 04:50 queuedata.json
2023-06-28 01:12:56 (14312): Guest Log: -rwxr-xr-x. 1 atlas atlas   11968 Jun 28 04:52 init_data.xml
2023-06-28 01:12:56 (14312): Guest Log: -rwxr-xr-x. 1 atlas atlas  421970 Jun 28 04:52 input.tar.gz
2023-06-28 01:12:56 (14312): Guest Log: -rwxr-xr-x. 1 atlas atlas   17604 Jun 28 04:52 start_atlas.sh
2023-06-28 01:12:56 (14312): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jun 28 04:52 EVNT.04972714._000026.pool.root.1 -> /data/./ATLAS.root_0
2023-06-28 01:12:56 (14312): Guest Log: -rw-r--r--. 1 atlas atlas    2752 Jun 28 04:53 pandaJob.out
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas     424 Jun 28 04:53 setup.sh.local
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas 1015085 Jun 28 04:54 agis_schedconf.cvmfs.json
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas 1393705 Jun 28 04:55 cric_ddmendpoints.json
2023-06-28 01:12:56 (14312): Guest Log: drwx------. 4 atlas atlas     284 Jun 28 04:56 pilot3
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas    1014 Jun 28 05:06 memory_monitor_summary.json
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas   76816 Jun 28 05:06 b25d2390-0daa-415c-b3c7-58b0521b02bc_66047.1.job.log.tgz
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas    8221 Jun 28 05:12 heartbeat.json
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas    4045 Jun 28 05:12 pilotlog.txt
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas  149607 Jun 28 05:12 b25d2390-0daa-415c-b3c7-58b0521b02bc_66047.1.job.log
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas     227 Jun 28 05:12 output.list
2023-06-28 01:12:56 (14312): Guest Log: -rw-r--r--. 1 atlas atlas     686 Jun 28 05:12 runtime_log
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas  245760 Jun 28 05:12 result.tar.gz
2023-06-28 01:12:56 (14312): Guest Log: -rw-r--r--. 1 atlas atlas   11194 Jun 28 05:12 runtime_log.err
2023-06-28 01:12:56 (14312): Guest Log: -rw-------. 1 atlas atlas     624 Jun 28 05:12 3hcMDm0JcY3n7Olcko1bjSoqABFKDmABFKDm7AsVDmTJMKDmgDNYmn.diag
2023-06-28 01:12:56 (14312): Guest Log: Looking for outputfile output.1.b25d2390-0daa-415c-b3c7-58b0521b02bc_66047.pool.root
2023-06-28 01:12:56 (14312): Guest Log: No HITS file was produced
2023-06-28 01:12:56 (14312): Guest Log: Successfully finished the ATLAS job!
2023-06-28 01:12:56 (14312): Guest Log: Copying the results back to the shared directory!
2023-06-28 01:12:56 (14312): Guest Log:  *** Contents of shared directory: ***
2023-06-28 01:12:56 (14312): Guest Log: total 37040
2023-06-28 01:12:56 (14312): Guest Log: -rwxrwxrwx. 1 root root 37224345 Jun 28 04:51 ATLAS.root_0
2023-06-28 01:12:56 (14312): Guest Log: -rwxrwxrwx. 1 root root    11968 Jun 28 04:51 init_data.xml
2023-06-28 01:12:56 (14312): Guest Log: -rwxrwxrwx. 1 root root   421970 Jun 28 04:51 input.tar.gz
2023-06-28 01:12:56 (14312): Guest Log: -rwxrwxrwx. 1 root root   245760 Jun 28 05:12 result.tar.gz
2023-06-28 01:12:56 (14312): Guest Log: -rwxrwxrwx. 1 root root    17604 Jun 28 04:51 start_atlas.sh
2023-06-28 01:12:56 (14312): Guest Log:  *** Success! Shutting down the machine. ***
2023-06-28 01:12:56 (14312): VM Completion File Detected.
2023-06-28 01:12:56 (14312): Powering off VM.
2023-06-28 01:12:57 (14312): Successfully stopped VM.
2023-06-28 01:12:57 (14312): Deregistering VM. (boinc_fb881ae30a5bac73, slot#5)
2023-06-28 01:12:57 (14312): Removing network bandwidth throttle group from VM.
2023-06-28 01:12:57 (14312): Removing VM from VirtualBox.
01:13:03 (14312): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN