Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-06-30 12:00:30 (1432): Detected: vboxwrapper 26206
2023-06-30 12:00:30 (1432): Detected: BOINC client v7.22.2
2023-06-30 12:00:31 (1432): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2023-06-30 12:00:31 (1432): Successfully copied 'init_data.xml' to the shared directory.
2023-06-30 12:00:32 (1432): Create VM. (boinc_87cfc46b62df91c8, slot#2)
2023-06-30 12:00:32 (1432): Setting Memory Size for VM. (4100MB)
2023-06-30 12:00:33 (1432): Setting CPU Count for VM. (1)
2023-06-30 12:00:33 (1432): Setting Chipset Options for VM.
2023-06-30 12:00:33 (1432): Setting Graphics Controller Options for VM.
2023-06-30 12:00:34 (1432): Setting Boot Options for VM.
2023-06-30 12:00:34 (1432): Setting Network Configuration for NAT.
2023-06-30 12:00:34 (1432): Enabling VM Network Access.
2023-06-30 12:00:34 (1432): Disabling USB Support for VM.
2023-06-30 12:00:35 (1432): Disabling COM Port Support for VM.
2023-06-30 12:00:35 (1432): Disabling LPT Port Support for VM.
2023-06-30 12:00:35 (1432): Disabling Audio Support for VM.
2023-06-30 12:00:35 (1432): Disabling Clipboard Support for VM.
2023-06-30 12:00:36 (1432): Disabling Drag and Drop Support for VM.
2023-06-30 12:00:36 (1432): Adding storage controller(s) to VM.
2023-06-30 12:00:36 (1432): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-06-30 12:00:39 (1432): Adding VirtualBox Guest Additions to VM.
2023-06-30 12:00:39 (1432): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-06-30 12:00:40 (1432): forwarding host port 60653 to guest port 80
2023-06-30 12:00:40 (1432): Enabling remote desktop for VM.
2023-06-30 12:00:40 (1432): Enabling shared directory for VM.
2023-06-30 12:00:41 (1432): Starting VM using VBoxManage interface. (boinc_87cfc46b62df91c8, slot#2)
2023-06-30 12:00:48 (1432): Successfully started VM. (PID = '16236')
2023-06-30 12:00:48 (1432): Reporting VM Process ID to BOINC.
2023-06-30 12:00:48 (1432): Guest Log: BIOS: VirtualBox 7.0.8
2023-06-30 12:00:48 (1432): Guest Log: CPUID EDX: 0x178bfbff
2023-06-30 12:00:48 (1432): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-06-30 12:00:48 (1432): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-06-30 12:00:48 (1432): VM state change detected. (old = 'poweredoff', new = 'running')
2023-06-30 12:00:48 (1432): Detected: Web Application Enabled (http://localhost:60653)
2023-06-30 12:00:48 (1432): Detected: Remote Desktop Enabled (localhost:60655)
2023-06-30 12:00:48 (1432): Preference change detected
2023-06-30 12:00:48 (1432): Setting CPU throttle for VM. (90%)
2023-06-30 12:00:48 (1432): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2023-06-30 12:00:50 (1432): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-06-30 12:00:50 (1432): Guest Log: BIOS: Booting from Hard Disk...
2023-06-30 12:00:53 (1432): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-06-30 12:00:53 (1432): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-06-30 12:00:53 (1432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-06-30 12:00:56 (1432): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-06-30 12:00:56 (1432): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-06-30 12:01:04 (1432): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-06-30 12:01:04 (1432): Guest Log: 00:00:00.000127 main     Log opened 2023-06-30T12:01:02.712779000Z
2023-06-30 12:01:04 (1432): Guest Log: 00:00:00.000234 main     OS Product: Linux
2023-06-30 12:01:04 (1432): Guest Log: 00:00:00.000257 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-06-30 12:01:04 (1432): Guest Log: 00:00:00.000275 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-06-30 12:01:04 (1432): Guest Log: 00:00:00.000315 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-06-30 12:01:04 (1432): Guest Log: 00:00:00.000315 main     Process ID: 1267
2023-06-30 12:01:04 (1432): Guest Log: 00:00:00.000316 main     Package type: LINUX_64BITS_GENERIC
2023-06-30 12:01:04 (1432): Guest Log: 00:00:00.001369 main     5.2.32 r132073 started. Verbose level = 0
2023-06-30 12:01:04 (1432): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-06-30 12:01:04 (1432): Guest Log: [INFO] Mounting shared directory
2023-06-30 12:01:04 (1432): Guest Log: [INFO] Checking for init_data.xml
2023-06-30 12:01:14 (1432): Guest Log: 00:00:10.017551 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 838 857 000ns (GuestNow=1 688 140 873 568 001 000 ns GuestLast=1 688 126 462 729 144 000 ns fSetTimeLastLoop=true )
2023-06-30 12:01:26 (1432): Preference change detected
2023-06-30 12:01:26 (1432): Setting CPU throttle for VM. (90%)
2023-06-30 12:01:26 (1432): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2023-06-30 12:02:12 (1432): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-06-30 12:02:12 (1432): Guest Log: [INFO] Detected branch: dev
2023-06-30 12:02:12 (1432): Guest Log: This is the dev version of the ATLAS job wrapper
2023-06-30 12:02:12 (1432): Guest Log: Copying input files
2023-06-30 12:02:13 (1432): Guest Log: Copied input files into RunAtlas.
2023-06-30 12:02:13 (1432): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-06-30 12:02:13 (1432): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-06-30 12:02:13 (1432): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-06-30 12:02:13 (1432): Guest Log: Further information can be found at the LHC@home message board.
2023-06-30 12:02:24 (1432): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-06-30 12:02:24 (1432): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-06-30 12:02:24 (1432): Guest Log: 2.6.3.0 1560 0 30096 120755 4 1 3116385 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2023-06-30 12:02:25 (1432): Guest Log: copied the webapp to /var/www
2023-06-30 12:02:25 (1432): Guest Log: core_number=1
2023-06-30 12:02:28 (1432): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-06-30 12:02:28 (1432): Guest Log:  *** Starting ATLAS job. (PandaID=5892547990 taskID=NULL&cor) ***
2023-06-30 12:21:33 (1432): Guest Log:  *** Job finished ***
2023-06-30 12:21:33 (1432): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-06-30 12:21:33 (1432): Guest Log:  *** Error codes and diagnostics ***
2023-06-30 12:21:33 (1432): Guest Log:     "exeErrorCode": 65,
2023-06-30 12:21:33 (1432): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: PyG4AtlasAlg; Current Function: unknown\"",
2023-06-30 12:21:33 (1432): Guest Log:     "pilotErrorCode": 1305,
2023-06-30 12:21:33 (1432): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-06-30 16:16:52,249 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorith",
2023-06-30 12:21:33 (1432): Guest Log:  *** Listing of results directory ***
2023-06-30 12:21:33 (1432): Guest Log: total 3780
2023-06-30 12:21:33 (1432): Guest Log: -rw-r--r--. 1 atlas atlas  410964 Jun 30 14:24 pilot3.tar.gz
2023-06-30 12:21:33 (1432): Guest Log: -rwx------. 1 atlas atlas   27010 Jun 30 15:11 runpilot2-wrapper.sh
2023-06-30 12:21:33 (1432): Guest Log: -rw-r--r--. 1 atlas atlas    4388 Jun 30 15:11 queuedata.json
2023-06-30 12:21:33 (1432): Guest Log: -rwxr-xr-x. 1 atlas atlas   11969 Jun 30 16:02 init_data.xml
2023-06-30 12:21:33 (1432): Guest Log: -rwxr-xr-x. 1 atlas atlas  422296 Jun 30 16:02 input.tar.gz
2023-06-30 12:21:33 (1432): Guest Log: -rwxr-xr-x. 1 atlas atlas   17624 Jun 30 16:02 start_atlas.sh
2023-06-30 12:21:33 (1432): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jun 30 16:02 EVNT.04972714._000040.pool.root.1 -> /data/./ATLAS.root_0
2023-06-30 12:21:33 (1432): Guest Log: -rw-r--r--. 1 atlas atlas    2752 Jun 30 16:02 pandaJob.out
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas     424 Jun 30 16:02 setup.sh.local
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas 1389537 Jun 30 16:04 cric_ddmendpoints.json
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas 1012994 Jun 30 16:04 agis_schedconf.cvmfs.json
2023-06-30 12:21:33 (1432): Guest Log: drwx------. 4 atlas atlas     262 Jun 30 16:05 pilot3
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas    1012 Jun 30 16:16 memory_monitor_summary.json
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas   88561 Jun 30 16:17 b88a918c-ba15-4775-9a77-a5c765b6694e_40185.1.job.log.tgz
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas    9398 Jun 30 16:21 heartbeat.json
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas    4164 Jun 30 16:21 pilotlog.txt
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas  147028 Jun 30 16:21 b88a918c-ba15-4775-9a77-a5c765b6694e_40185.1.job.log
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas     227 Jun 30 16:21 output.list
2023-06-30 12:21:33 (1432): Guest Log: -rw-r--r--. 1 atlas atlas     686 Jun 30 16:21 runtime_log
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas  256000 Jun 30 16:21 result.tar.gz
2023-06-30 12:21:33 (1432): Guest Log: -rw-r--r--. 1 atlas atlas   11200 Jun 30 16:21 runtime_log.err
2023-06-30 12:21:33 (1432): Guest Log: -rw-------. 1 atlas atlas     626 Jun 30 16:21 lUmNDmhxUZ3n7Olcko1bjSoqABFKDmABFKDm7AsVDmjTMKDm50si6m.diag
2023-06-30 12:21:33 (1432): Guest Log: Looking for outputfile output.1.b88a918c-ba15-4775-9a77-a5c765b6694e_40185.pool.root
2023-06-30 12:21:33 (1432): Guest Log: No HITS file was produced
2023-06-30 12:21:33 (1432): Guest Log: Successfully finished the ATLAS job!
2023-06-30 12:21:33 (1432): Guest Log: Copying the results back to the shared directory!
2023-06-30 12:21:33 (1432): Guest Log:  *** Contents of shared directory: ***
2023-06-30 12:21:33 (1432): Guest Log: total 37772
2023-06-30 12:21:33 (1432): Guest Log: -rwxrwxrwx. 1 root root 37960264 Jun 30 16:00 ATLAS.root_0
2023-06-30 12:21:33 (1432): Guest Log: -rwxrwxrwx. 1 root root    11969 Jun 30 16:00 init_data.xml
2023-06-30 12:21:33 (1432): Guest Log: -rwxrwxrwx. 1 root root   422296 Jun 30 15:12 input.tar.gz
2023-06-30 12:21:33 (1432): Guest Log: -rwxrwxrwx. 1 root root   256000 Jun 30 16:21 result.tar.gz
2023-06-30 12:21:33 (1432): Guest Log: -rwxrwxrwx. 1 root root    17624 Jun 30 15:12 start_atlas.sh
2023-06-30 12:21:33 (1432): Guest Log:  *** Success! Shutting down the machine. ***
2023-06-30 12:21:33 (1432): VM Completion File Detected.
2023-06-30 12:21:33 (1432): Powering off VM.
2023-06-30 12:21:34 (1432): Successfully stopped VM.
2023-06-30 12:21:34 (1432): Deregistering VM. (boinc_87cfc46b62df91c8, slot#2)
2023-06-30 12:21:34 (1432): Removing network bandwidth throttle group from VM.
2023-06-30 12:21:34 (1432): Removing VM from VirtualBox.
12:21:40 (1432): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN