Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-07-03 22:07:12 (3244): Detected: vboxwrapper 26206
2023-07-03 22:07:12 (3244): Detected: BOINC client v7.20.2
2023-07-03 22:07:13 (3244): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2023-07-03 22:07:13 (3244): Successfully copied 'init_data.xml' to the shared directory.
2023-07-03 22:07:13 (3244): Create VM. (boinc_0fa9398ef6024a30, slot#16)
2023-07-03 22:07:14 (3244): Setting Memory Size for VM. (4100MB)
2023-07-03 22:07:14 (3244): Setting CPU Count for VM. (1)
2023-07-03 22:07:14 (3244): Setting Chipset Options for VM.
2023-07-03 22:07:15 (3244): Setting Graphics Controller Options for VM.
2023-07-03 22:07:15 (3244): Setting Boot Options for VM.
2023-07-03 22:07:15 (3244): Setting Network Configuration for NAT.
2023-07-03 22:07:16 (3244): Enabling VM Network Access.
2023-07-03 22:07:16 (3244): Disabling USB Support for VM.
2023-07-03 22:07:16 (3244): Disabling COM Port Support for VM.
2023-07-03 22:07:16 (3244): Disabling LPT Port Support for VM.
2023-07-03 22:07:17 (3244): Disabling Audio Support for VM.
2023-07-03 22:07:17 (3244): Disabling Clipboard Support for VM.
2023-07-03 22:07:17 (3244): Disabling Drag and Drop Support for VM.
2023-07-03 22:07:17 (3244): Adding storage controller(s) to VM.
2023-07-03 22:07:18 (3244): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-07-03 22:07:21 (3244): Adding VirtualBox Guest Additions to VM.
2023-07-03 22:07:21 (3244): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-07-03 22:07:21 (3244): forwarding host port 8104 to guest port 80
2023-07-03 22:07:21 (3244): Enabling remote desktop for VM.
2023-07-03 22:07:22 (3244): Enabling shared directory for VM.
2023-07-03 22:07:23 (3244): Starting VM using VBoxManage interface. (boinc_0fa9398ef6024a30, slot#16)
2023-07-03 22:07:30 (3244): Successfully started VM. (PID = '7176')
2023-07-03 22:07:30 (3244): Reporting VM Process ID to BOINC.
2023-07-03 22:07:30 (3244): Guest Log: BIOS: VirtualBox 7.0.8
2023-07-03 22:07:30 (3244): Guest Log: CPUID EDX: 0x178bfbff
2023-07-03 22:07:30 (3244): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-07-03 22:07:30 (3244): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-07-03 22:07:30 (3244): VM state change detected. (old = 'poweredoff', new = 'running')
2023-07-03 22:07:30 (3244): Detected: Web Application Enabled (http://localhost:8104)
2023-07-03 22:07:30 (3244): Detected: Remote Desktop Enabled (localhost:8105)
2023-07-03 22:07:30 (3244): Preference change detected
2023-07-03 22:07:30 (3244): Setting CPU throttle for VM. (90%)
2023-07-03 22:07:30 (3244): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2023-07-03 22:07:32 (3244): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-07-03 22:07:32 (3244): Guest Log: BIOS: Booting from Hard Disk...
2023-07-03 22:07:35 (3244): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-07-03 22:07:35 (3244): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-07-03 22:07:35 (3244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-07-03 22:07:39 (3244): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-07-03 22:07:39 (3244): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-07-03 22:07:49 (3244): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-07-03 22:07:49 (3244): Guest Log: 00:00:00.000158 main     Log opened 2023-07-03T22:07:47.377552000Z
2023-07-03 22:07:49 (3244): Guest Log: 00:00:00.000290 main     OS Product: Linux
2023-07-03 22:07:49 (3244): Guest Log: 00:00:00.000327 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-07-03 22:07:49 (3244): Guest Log: 00:00:00.000358 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-07-03 22:07:49 (3244): Guest Log: 00:00:00.000404 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-07-03 22:07:49 (3244): Guest Log: 00:00:00.000405 main     Process ID: 1248
2023-07-03 22:07:49 (3244): Guest Log: 00:00:00.000405 main     Package type: LINUX_64BITS_GENERIC
2023-07-03 22:07:49 (3244): Guest Log: 00:00:00.001357 main     5.2.32 r132073 started. Verbose level = 0
2023-07-03 22:07:49 (3244): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-07-03 22:07:49 (3244): Guest Log: [INFO] Mounting shared directory
2023-07-03 22:07:49 (3244): Guest Log: [INFO] Checking for init_data.xml
2023-07-03 22:07:59 (3244): Guest Log: 00:00:10.027565 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 150 700 000ns (GuestNow=1 688 436 478 554 803 000 ns GuestLast=1 688 422 067 404 103 000 ns fSetTimeLastLoop=true )
2023-07-03 22:08:02 (3244): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-07-03 22:08:02 (3244): Guest Log: [INFO] Detected branch: dev
2023-07-03 22:08:02 (3244): Guest Log: This is the dev version of the ATLAS job wrapper
2023-07-03 22:08:02 (3244): Guest Log: Copying input files
2023-07-03 22:08:02 (3244): Guest Log: Copied input files into RunAtlas.
2023-07-03 22:08:02 (3244): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-07-03 22:08:02 (3244): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-07-03 22:08:02 (3244): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-07-03 22:08:02 (3244): Guest Log: Further information can be found at the LHC@home message board.
2023-07-03 22:08:19 (3244): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-07-03 22:08:19 (3244): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-07-03 22:08:19 (3244): Guest Log: 2.6.3.0 1521 0 32088 120870 4 1 3116385 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2023-07-03 22:08:23 (3244): Guest Log: copied the webapp to /var/www
2023-07-03 22:08:23 (3244): Guest Log: core_number=1
2023-07-03 22:08:31 (3244): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-07-03 22:08:31 (3244): Guest Log:  *** Starting ATLAS job. (PandaID=5894801477 taskID=NULL&cor) ***
2023-07-03 22:22:03 (3244): Guest Log:  *** Job finished ***
2023-07-03 22:22:03 (3244): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-07-03 22:22:03 (3244): Guest Log:  *** Error codes and diagnostics ***
2023-07-03 22:22:03 (3244): Guest Log:     "exeErrorCode": 0,
2023-07-03 22:22:03 (3244): Guest Log:     "exeErrorDiag": "",
2023-07-03 22:22:03 (3244): Guest Log:     "pilotErrorCode": 1305,
2023-07-03 22:22:03 (3244): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-07-04 02:14:38,553 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
2023-07-03 22:22:03 (3244): Guest Log:  *** Listing of results directory ***
2023-07-03 22:22:03 (3244): Guest Log: total 3636
2023-07-03 22:22:03 (3244): Guest Log: -rw-r--r--. 1 atlas atlas  410964 Jul  4 01:22 pilot3.tar.gz
2023-07-03 22:22:03 (3244): Guest Log: -rwx------. 1 atlas atlas   27012 Jul  4 01:25 runpilot2-wrapper.sh
2023-07-03 22:22:03 (3244): Guest Log: -rw-r--r--. 1 atlas atlas    4388 Jul  4 01:25 queuedata.json
2023-07-03 22:22:03 (3244): Guest Log: -rwxr-xr-x. 1 atlas atlas    9095 Jul  4 02:08 init_data.xml
2023-07-03 22:22:03 (3244): Guest Log: -rwxr-xr-x. 1 atlas atlas  422242 Jul  4 02:08 input.tar.gz
2023-07-03 22:22:03 (3244): Guest Log: -rwxr-xr-x. 1 atlas atlas   17604 Jul  4 02:08 start_atlas.sh
2023-07-03 22:22:03 (3244): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul  4 02:08 EVNT.04972714._000035.pool.root.1 -> /data/./ATLAS.root_0
2023-07-03 22:22:03 (3244): Guest Log: -rw-r--r--. 1 atlas atlas    2685 Jul  4 02:08 pandaJob.out
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas     424 Jul  4 02:08 setup.sh.local
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas 1389537 Jul  4 02:10 cric_ddmendpoints.json
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas 1012927 Jul  4 02:10 agis_schedconf.cvmfs.json
2023-07-03 22:22:03 (3244): Guest Log: drwx------. 4 atlas atlas     262 Jul  4 02:11 pilot3
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas    1016 Jul  4 02:14 memory_monitor_summary.json
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas   54995 Jul  4 02:14 a04f0f4d-8296-4e8a-b0f5-0af71ee95364_97855.1.job.log.tgz
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas    7786 Jul  4 02:21 heartbeat.json
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas    4041 Jul  4 02:22 pilotlog.txt
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas  114423 Jul  4 02:22 a04f0f4d-8296-4e8a-b0f5-0af71ee95364_97855.1.job.log
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas     227 Jul  4 02:22 output.list
2023-07-03 22:22:03 (3244): Guest Log: -rw-r--r--. 1 atlas atlas     686 Jul  4 02:22 runtime_log
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas  184320 Jul  4 02:22 result.tar.gz
2023-07-03 22:22:03 (3244): Guest Log: -rw-r--r--. 1 atlas atlas   11205 Jul  4 02:22 runtime_log.err
2023-07-03 22:22:03 (3244): Guest Log: -rw-------. 1 atlas atlas     626 Jul  4 02:22 9tcNDmpyja3n7Olcko1bjSoqABFKDmABFKDm7AsVDm4hMKDm8t431n.diag
2023-07-03 22:22:03 (3244): Guest Log: Looking for outputfile output.1.a04f0f4d-8296-4e8a-b0f5-0af71ee95364_97855.pool.root
2023-07-03 22:22:03 (3244): Guest Log: No HITS file was produced
2023-07-03 22:22:03 (3244): Guest Log: Successfully finished the ATLAS job!
2023-07-03 22:22:03 (3244): Guest Log: Copying the results back to the shared directory!
2023-07-03 22:22:03 (3244): Guest Log:  *** Contents of shared directory: ***
2023-07-03 22:22:03 (3244): Guest Log: total 38688
2023-07-03 22:22:03 (3244): Guest Log: -rwxrwxrwx. 1 root root 38971704 Jul  4 02:07 ATLAS.root_0
2023-07-03 22:22:03 (3244): Guest Log: -rwxrwxrwx. 1 root root     9095 Jul  4 02:07 init_data.xml
2023-07-03 22:22:03 (3244): Guest Log: -rwxrwxrwx. 1 root root   422242 Jul  4 01:26 input.tar.gz
2023-07-03 22:22:03 (3244): Guest Log: -rwxrwxrwx. 1 root root   184320 Jul  4 02:22 result.tar.gz
2023-07-03 22:22:03 (3244): Guest Log: -rwxrwxrwx. 1 root root    17604 Jul  4 01:26 start_atlas.sh
2023-07-03 22:22:03 (3244): Guest Log:  *** Success! Shutting down the machine. ***
2023-07-03 22:22:03 (3244): VM Completion File Detected.
2023-07-03 22:22:03 (3244): Powering off VM.
2023-07-03 22:22:04 (3244): Successfully stopped VM.
2023-07-03 22:22:04 (3244): Deregistering VM. (boinc_0fa9398ef6024a30, slot#16)
2023-07-03 22:22:04 (3244): Removing network bandwidth throttle group from VM.
2023-07-03 22:22:04 (3244): Removing VM from VirtualBox.
22:22:10 (3244): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN