Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
10:01:40 (22165): wrapper (7.7.26015): starting
10:01:40 (22165): wrapper: running run_atlas (--nthreads 2)
[2023-07-09 10:01:40] Arguments: --nthreads 2
[2023-07-09 10:01:40] Threads: 2
[2023-07-09 10:01:40] Checking for CVMFS
[2023-07-09 10:01:40] Probing /cvmfs/atlas.cern.ch... OK
[2023-07-09 10:01:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-07-09 10:01:40] Running cvmfs_config stat atlas.cern.ch
[2023-07-09 10:01:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-07-09 10:01:41] 2.10.1.0 8745 261 45912 121068 3 84 4118867 4194304 0 130560 0 1295284 99.996 50957 7031 http://cernvmfs.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch DIRECT 1
[2023-07-09 10:01:41] CVMFS is ok
[2023-07-09 10:01:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2023-07-09 10:01:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2023-07-09 10:01:41] Small home clusters do not require a local http proxy but it is suggested if
[2023-07-09 10:01:41] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2023-07-09 10:01:41] Further information can be found at the LHC@home message board.
[2023-07-09 10:01:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-07-09 10:01:41] Checking for apptainer binary...
[2023-07-09 10:01:41] apptainer is not installed, using version from CVMFS
[2023-07-09 10:01:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-07-09 10:01:42] vps-3dca72ac
[2023-07-09 10:01:42] apptainer works
[2023-07-09 10:01:42] Set ATHENA_PROC_NUMBER=2
[2023-07-09 10:01:42] Set ATHENA_CORE_NUMBER=2
[2023-07-09 10:01:42] Starting ATLAS job with PandaID=5899039389
[2023-07-09 10:01:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-07-09 10:16:56]  *** The last 200 lines of the pilot log: ***
[2023-07-09 10:16:56] 2023-07-09 08:15:58,868 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:15:58,869 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:01,371 | INFO     | monitor loop #153: job 0:5899039389 is in state 'stageout'
[2023-07-09 10:16:56] 2023-07-09 08:16:01,407 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:16:01,408 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:03,912 | INFO     | monitor loop #154: job 0:5899039389 is in state 'stageout'
[2023-07-09 10:16:56] 2023-07-09 08:16:03,943 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:16:03,944 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:06,447 | INFO     | monitor loop #155: job 0:5899039389 is in state 'stageout'
[2023-07-09 10:16:56] 2023-07-09 08:16:06,485 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:16:06,486 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:08,990 | INFO     | monitor loop #156: job 0:5899039389 is in state 'stageout'
[2023-07-09 10:16:56] 2023-07-09 08:16:09,020 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:16:09,020 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:11,522 | INFO     | monitor loop #157: job 0:5899039389 is in state 'stageout'
[2023-07-09 10:16:56] 2023-07-09 08:16:11,556 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:16:11,556 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:14,060 | INFO     | monitor loop #158: job 0:5899039389 is in state 'stageout'
[2023-07-09 10:16:56] 2023-07-09 08:16:14,089 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:16:14,089 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:16,592 | INFO     | monitor loop #159: job 0:5899039389 is in state 'stageout'
[2023-07-09 10:16:56] 2023-07-09 08:16:16,616 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:16:16,616 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:19,119 | INFO     | monitor loop #160: job 0:5899039389 is in state 'stageout'
[2023-07-09 10:16:56] 2023-07-09 08:16:19,148 | INFO     | number of running child processes to parent process 32079: 1
[2023-07-09 10:16:56] 2023-07-09 08:16:19,148 | INFO     | maximum number of monitored processes: 7
[2023-07-09 10:16:56] 2023-07-09 08:16:21,167 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-07-09 10:16:56] 2023-07-09 08:16:21,269 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-07-09 10:16:56] 2023-07-09 08:16:21,269 | WARNING  | cache file=/var/lib/boinc-client/slots/1/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/1/agis
[2023-07-09 10:16:56] 2023-07-09 08:16:21,319 | INFO     | transferring file f3523f0f-b99a-4abe-a3dd-c066e90580d8_69784.1.job.log.tgz from /var/lib/boinc-client/slots/1/PanDA_Pilot-5899039389/f3523f0f-b99a-4abe-a3dd-c066e9
[2023-07-09 10:16:56] 2023-07-09 08:16:21,320 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-5899039389/f3523f0f-b99a-4abe-a3dd-c066e90580d8_69784.1.job.log.tgz /var/lib/boinc-cli
[2023-07-09 10:16:56] 2023-07-09 08:16:21,337 | INFO     | Adding to output.list: f3523f0f-b99a-4abe-a3dd-c066e90580d8_69784.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/03/71/f3523f0f-b99a-
[2023-07-09 10:16:56] 2023-07-09 08:16:21,338 | INFO     | summary of transferred files:
[2023-07-09 10:16:56] 2023-07-09 08:16:21,338 | INFO     |  -- lfn=f3523f0f-b99a-4abe-a3dd-c066e90580d8_69784.1.job.log.tgz, status_code=0, status=transferred
[2023-07-09 10:16:56] 2023-07-09 08:16:21,338 | INFO     | stage-out finished correctly
[2023-07-09 10:16:56] 2023-07-09 08:16:21,651 | INFO     | monitor loop #161: job 0:5899039389 is in state 'finished'
[2023-07-09 10:16:56] 2023-07-09 08:16:21,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-09 10:16:56] 2023-07-09 08:16:24,145 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-07-09 10:16:56] 2023-07-09 08:16:24,156 | INFO     | monitor loop #162: job 0:5899039389 is in state 'finished'
[2023-07-09 10:16:56] 2023-07-09 08:16:24,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-09 10:16:56] 2023-07-09 08:16:26,660 | INFO     | monitor loop #163: job 0:5899039389 is in state 'finished'
[2023-07-09 10:16:56] 2023-07-09 08:16:26,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-09 10:16:56] 2023-07-09 08:16:27,079 | INFO     | job 5899039389 has state=finished
[2023-07-09 10:16:56] 2023-07-09 08:16:27,080 | INFO     | preparing for final server update for job 5899039389 in state='finished'
[2023-07-09 10:16:56] 2023-07-09 08:16:27,080 | INFO     | this job has now completed (state=finished)
[2023-07-09 10:16:56] 2023-07-09 08:16:27,081 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-07-09 10:16:56] 2023-07-09 08:16:27,081 | INFO     | job 5899039389 has finished - writing final server update
[2023-07-09 10:16:56] 2023-07-09 08:16:27,083 | WARNING  | wrong length of table data, x=[1688889897.0, 1688889958.0, 1688890019.0, 1688890080.0, 1688890141.0, 1688890202.0], y=[1396.0, 864851.0, 1162959.0, 1608483.0, 2923
[2023-07-09 10:16:56] 2023-07-09 08:16:27,084 | INFO     | total number of processed events: 2 (read)
[2023-07-09 10:16:56] 2023-07-09 08:16:27,086 | INFO     | executing command: lscpu
[2023-07-09 10:16:56] 2023-07-09 08:16:27,107 | INFO     | found 2 cores (1 cores per socket, 2 sockets)
[2023-07-09 10:16:56] 2023-07-09 08:16:27,108 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-07-09 10:16:56] 2023-07-09 08:16:27,134 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-07-09 10:16:56] 2023-07-09 08:16:29,163 | INFO     | monitor loop #164: job 0:5899039389 is in state 'finished'
[2023-07-09 10:16:56] 2023-07-09 08:16:29,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-09 10:16:56] 2023-07-09 08:16:31,667 | INFO     | monitor loop #165: job 0:5899039389 is in state 'finished'
[2023-07-09 10:16:56] 2023-07-09 08:16:31,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-09 10:16:56] 2023-07-09 08:16:34,170 | INFO     | monitor loop #166: job 0:5899039389 is in state 'finished'
[2023-07-09 10:16:56] 2023-07-09 08:16:34,170 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-09 10:16:56] 2023-07-09 08:16:35,436 | INFO     | no CPU architecture reporting
[2023-07-09 10:16:56] 2023-07-09 08:16:35,436 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-5899039389/memory_monitor_summary.json (trf name=prmon)
[2023-07-09 10:16:56] 2023-07-09 08:16:35,437 | INFO     | extracted standard info from prmon json
[2023-07-09 10:16:56] 2023-07-09 08:16:35,437 | INFO     | extracted standard memory fields from prmon json
[2023-07-09 10:16:56] 2023-07-09 08:16:35,437 | INFO     | ..............................
[2023-07-09 10:16:56] 2023-07-09 08:16:35,437 | INFO     | . Timing measurements:
[2023-07-09 10:16:56] 2023-07-09 08:16:35,437 | INFO     | . get job = 47 s
[2023-07-09 10:16:56] 2023-07-09 08:16:35,437 | INFO     | . initial setup = 55 s
[2023-07-09 10:16:56] 2023-07-09 08:16:35,438 | INFO     | . payload setup = 4 s
[2023-07-09 10:16:56] 2023-07-09 08:16:35,438 | INFO     | . stage-in = 67 s
[2023-07-09 10:16:56] 2023-07-09 08:16:35,438 | INFO     | . payload execution = 351 s
[2023-07-09 10:16:56] 2023-07-09 08:16:35,438 | INFO     | . stage-out = 334 s
[2023-07-09 10:16:56] 2023-07-09 08:16:35,438 | INFO     | ..............................
[2023-07-09 10:16:56] 2023-07-09 08:16:35,500 | INFO     | 
[2023-07-09 10:16:56] 2023-07-09 08:16:35,500 | INFO     | job summary report
[2023-07-09 10:16:56] 2023-07-09 08:16:35,500 | INFO     | --------------------------------------------------
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | PanDA job id: 5899039389
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | task id: NULL
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | errors: (none)
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | status: LOG_TRANSFER = DONE 
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | pilot state: finished 
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | transexitcode: 0
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | exeerrorcode: 0
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | exeerrordiag: 
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | exitcode: 0
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | exitmsg: OK
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | cpuconsumptiontime: 248 s
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | nevents: 2
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | neventsw: 0
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | pid: 32079
[2023-07-09 10:16:56] 2023-07-09 08:16:35,501 | INFO     | pgrp: 32079
[2023-07-09 10:16:56] 2023-07-09 08:16:35,502 | INFO     | corecount: 2
[2023-07-09 10:16:56] 2023-07-09 08:16:35,502 | INFO     | event service: False
[2023-07-09 10:16:56] 2023-07-09 08:16:35,502 | INFO     | sizes: {0: 2473276, 1: 2473276, 11: 2473450, 22: 2473478, 32: 2473506, 43: 2473534, 54: 2473690, 64: 2473718, 71: 2473834, 75: 2473862, 356: 2498536, 357: 2498815,
[2023-07-09 10:16:56] 2023-07-09 08:16:35,502 | INFO     | --------------------------------------------------
[2023-07-09 10:16:56] 2023-07-09 08:16:35,502 | INFO     | 
[2023-07-09 10:16:56] 2023-07-09 08:16:35,502 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2023-07-09 10:16:56] 2023-07-09 08:16:35,522 | INFO     | queue jobs had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,523 | INFO     | queue payloads had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,523 | INFO     | queue data_in had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,523 | INFO     | queue data_out had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,523 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,523 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,525 | INFO     | queue completed_jobids has 1 job(s)
[2023-07-09 10:16:56] 2023-07-09 08:16:35,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,525 | INFO     | queue messages had 0 job(s) [purged]
[2023-07-09 10:16:56] 2023-07-09 08:16:35,525 | INFO     | job 5899039389 has completed (purged errors)
[2023-07-09 10:16:56] 2023-07-09 08:16:35,526 | INFO     | overall cleanup function is called
[2023-07-09 10:16:56] 2023-07-09 08:16:36,535 | INFO     | --- collectZombieJob: --- 10, [32079]
[2023-07-09 10:16:56] 2023-07-09 08:16:36,535 | INFO     | zombie collector trying to kill pid 32079
[2023-07-09 10:16:56] 2023-07-09 08:16:36,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-07-09 10:16:56] 2023-07-09 08:16:37,541 | INFO     | collected zombie processes
[2023-07-09 10:16:56] 2023-07-09 08:16:37,541 | INFO     | will now attempt to kill all subprocesses of pid=32079
[2023-07-09 10:16:56] 2023-07-09 08:16:37,574 | INFO     | process IDs to be killed: [32079] (in reverse order)
[2023-07-09 10:16:56] 2023-07-09 08:16:37,597 | WARNING  | found no corresponding commands to process id(s)
[2023-07-09 10:16:56] 2023-07-09 08:16:37,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-07-09 10:16:56] 2023-07-09 08:16:37,597 | INFO     | ready for new job
[2023-07-09 10:16:56] 2023-07-09 08:16:37,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-07-09 10:16:56] 2023-07-09 08:16:37,599 | INFO     | ****************************************
[2023-07-09 10:16:56] 2023-07-09 08:16:37,599 | INFO     | ***  PanDA Pilot version 3.6.1 (31)  ***
[2023-07-09 10:16:56] 2023-07-09 08:16:37,600 | INFO     | ****************************************
[2023-07-09 10:16:56] 2023-07-09 08:16:37,600 | INFO     | 
[2023-07-09 10:16:56] 2023-07-09 08:16:37,600 | INFO     | pilot is running in a VM
[2023-07-09 10:16:56] 2023-07-09 08:16:37,600 | INFO     | architecture information:
[2023-07-09 10:16:56] 2023-07-09 08:16:37,601 | INFO     | executing command: cat /etc/os-release
[2023-07-09 10:16:56] 2023-07-09 08:16:37,612 | INFO     | cat /etc/os-release:
[2023-07-09 10:16:56] NAME="CentOS Linux"
[2023-07-09 10:16:56] VERSION="7 (Core)"
[2023-07-09 10:16:56] ID="centos"
[2023-07-09 10:16:56] ID_LIKE="rhel fedora"
[2023-07-09 10:16:56] VERSION_ID="7"
[2023-07-09 10:16:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-07-09 10:16:56] ANSI_COLOR="0;31"
[2023-07-09 10:16:56] CPE_NAME="cpe:/o:centos:centos:7"
[2023-07-09 10:16:56] HOME_URL="https://www.centos.org/"
[2023-07-09 10:16:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-07-09 10:16:56] 
[2023-07-09 10:16:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-07-09 10:16:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-07-09 10:16:56] REDHAT_SUPPORT_PRODUCT="centos"
[2023-07-09 10:16:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-07-09 10:16:56] 
[2023-07-09 10:16:56] 2023-07-09 08:16:37,613 | INFO     | ****************************************
[2023-07-09 10:16:56] 2023-07-09 08:16:38,116 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2023-07-09 10:16:56] 2023-07-09 08:16:38,135 | INFO     | sufficient remaining disk space (56371445760 B)
[2023-07-09 10:16:56] 2023-07-09 08:16:38,135 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-07-09 10:16:56] 2023-07-09 08:16:38,135 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-07-09 10:16:56] 2023-07-09 08:16:38,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-07-09 10:16:56] 2023-07-09 08:16:38,136 | INFO     | aborting loop
[2023-07-09 10:16:56] 2023-07-09 08:16:38,136 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-07-09 10:16:56] 2023-07-09 08:16:38,136 | INFO     | found 0 job(s) in 20 queues
[2023-07-09 10:16:56] 2023-07-09 08:16:38,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-07-09 10:16:56] 2023-07-09 08:16:38,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-07-09 10:16:56] 2023-07-09 08:16:39,141 | INFO     | [job] retrieve thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:39,142 | INFO     | [job] job monitor thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:39,248 | INFO     | [data] copytool_in thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:39,249 | INFO     | [job] create_data_payload thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:39,265 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-07-09 10:16:56] 2023-07-09 08:16:39,266 | INFO     | [payload] validate_pre thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:39,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-07-09 10:16:56] 2023-07-09 08:16:39,731 | INFO     | [payload] control thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:39,889 | INFO     | [data] control thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:39,896 | INFO     | [payload] failed_post thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:40,151 | INFO     | [payload] execute_payloads thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:40,386 | INFO     | [payload] validate_post thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:40,511 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-07-09 10:16:56] 2023-07-09 08:16:40,538 | INFO     | [job] validate thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:40,673 | INFO     | [job] control thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:41,437 | INFO     | [data] copytool_out thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:41,516 | INFO     | [job] queue monitor thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:43,271 | INFO     | [data] queue_monitor thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:49,018 | INFO     | job.realtimelogging is not enabled
[2023-07-09 10:16:56] 2023-07-09 08:16:50,023 | INFO     | [payload] run_realtimelog thread has finished
[2023-07-09 10:16:56] 2023-07-09 08:16:50,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139883845183296)>', '<ExcThread(monitor, started 139883418986240)>']
[2023-07-09 10:16:56] 2023-07-09 08:16:51,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-07-09 10:16:56] 2023-07-09 08:16:51,200 | INFO     | [monitor] control thread has ended
[2023-07-09 10:16:56] 2023-07-09 08:16:55,341 | INFO     | end of generic workflow (traces error code: 0)
[2023-07-09 10:16:56] 2023-07-09 08:16:55,342 | INFO     | traces error code: 0
[2023-07-09 10:16:56] 2023-07-09 08:16:55,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-07-09 10:16:56] 2023-07-09 08:16:55,438 [wrapper] ==== pilot stdout END ====
[2023-07-09 10:16:56] 2023-07-09 08:16:55,440 [wrapper] ==== wrapper stdout RESUME ====
[2023-07-09 10:16:56] 2023-07-09 08:16:55,442 [wrapper] pilotpid: 25298
[2023-07-09 10:16:56] 2023-07-09 08:16:55,444 [wrapper] Pilot exit status: 0
[2023-07-09 10:16:56] 2023-07-09 08:16:55,453 [wrapper] pandaids: 5899039389
[2023-07-09 10:16:56] 2023-07-09 08:16:55,458 [wrapper] apfmon messages muted
[2023-07-09 10:16:56] 2023-07-09 08:16:55,460 [wrapper] Test setup, not cleaning
[2023-07-09 10:16:56] 2023-07-09 08:16:55,462 [wrapper] ==== wrapper stdout END ====
[2023-07-09 10:16:56] 2023-07-09 08:16:55,464 [wrapper] ==== wrapper stderr END ====
[2023-07-09 10:16:56] 2023-07-09 08:16:55,467 [wrapper] wrapperexiting ec=0, duration=913
[2023-07-09 10:16:56] 2023-07-09 08:16:55,469 [wrapper] apfmon messages muted
[2023-07-09 10:16:56]  *** Error codes and diagnostics ***
[2023-07-09 10:16:56]     "exeErrorCode": 0,
[2023-07-09 10:16:56]     "exeErrorDiag": "",
[2023-07-09 10:16:56]     "pilotErrorCode": 0,
[2023-07-09 10:16:56]     "pilotErrorDiag": "",
[2023-07-09 10:16:56]  *** Listing of results directory ***
[2023-07-09 10:16:56] total 44296
[2023-07-09 10:16:56] -rwx------ 1 boinc boinc    27012 Jul  9 08:28 runpilot2-wrapper.sh
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc     4388 Jul  9 08:28 queuedata.json
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc   410964 Jul  9 08:28 pilot3.tar.gz
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc      107 Jul  9 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2023-07-09 10:16:56] -rwxr-xr-x 1 boinc boinc     7986 Jul  9 10:01 run_atlas
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc      112 Jul  9 10:01 job.xml
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc     6142 Jul  9 10:01 init_data.xml
[2023-07-09 10:16:56] -rw-r--r-- 2 boinc boinc 37738636 Jul  9 10:01 EVNT.04972714._000024.pool.root.1
[2023-07-09 10:16:56] -rw-r--r-- 2 boinc boinc    17604 Jul  9 10:01 start_atlas.sh
[2023-07-09 10:16:56] drwxrwx--x 2 boinc boinc     4096 Jul  9 10:01 shared
[2023-07-09 10:16:56] -rw-r--r-- 2 boinc boinc   422231 Jul  9 10:01 input.tar.gz
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc        0 Jul  9 10:01 boinc_lockfile
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc     2684 Jul  9 10:01 pandaJob.out
[2023-07-09 10:16:56] -rw------- 1 boinc boinc      424 Jul  9 10:01 setup.sh.local
[2023-07-09 10:16:56] -rw------- 1 boinc boinc  1012984 Jul  9 10:01 agis_schedconf.cvmfs.json
[2023-07-09 10:16:56] -rw------- 1 boinc boinc  1382335 Jul  9 10:02 cric_ddmendpoints.json
[2023-07-09 10:16:56] drwx------ 4 boinc boinc     4096 Jul  9 10:03 pilot3
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc      532 Jul  9 10:09 boinc_task_state.xml
[2023-07-09 10:16:56] -rw------- 1 boinc boinc  1419748 Jul  9 10:10 output.1.f3523f0f-b99a-4abe-a3dd-c066e90580d8_69784.pool.root
[2023-07-09 10:16:56] -rw------- 1 boinc boinc     1019 Jul  9 10:10 memory_monitor_summary.json
[2023-07-09 10:16:56] -rw------- 1 boinc boinc   511932 Jul  9 10:13 f3523f0f-b99a-4abe-a3dd-c066e90580d8_69784.1.job.log.tgz
[2023-07-09 10:16:56] -rw------- 1 boinc boinc     8304 Jul  9 10:16 heartbeat.json
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc     8192 Jul  9 10:16 boinc_mmap_file
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc       24 Jul  9 10:16 wrapper_checkpoint.txt
[2023-07-09 10:16:56] -rw------- 1 boinc boinc     4173 Jul  9 10:16 pilotlog.txt
[2023-07-09 10:16:56] -rw------- 1 boinc boinc   150399 Jul  9 10:16 f3523f0f-b99a-4abe-a3dd-c066e90580d8_69784.1.job.log
[2023-07-09 10:16:56] -rw------- 1 boinc boinc      464 Jul  9 10:16 output.list
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc      748 Jul  9 10:16 runtime_log
[2023-07-09 10:16:56] -rw------- 1 boinc boinc  2099200 Jul  9 10:16 result.tar.gz
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc    12114 Jul  9 10:16 runtime_log.err
[2023-07-09 10:16:56] -rw------- 1 boinc boinc      629 Jul  9 10:16 43qMDmD5cc3n7Olcko1bjSoqABFKDmABFKDm7AsVDmk0MKDmLcRhin.diag
[2023-07-09 10:16:56] -rw-r--r-- 1 boinc boinc    23200 Jul  9 10:16 stderr.txt
[2023-07-09 10:16:56] HITS file was successfully produced:
[2023-07-09 10:16:56] -rw------- 1 boinc boinc 1419748 Jul  9 10:10 shared/HITS.pool.root.1
[2023-07-09 10:16:56]  *** Contents of shared directory: ***
[2023-07-09 10:16:56] total 40732
[2023-07-09 10:16:56] -rw-r--r-- 2 boinc boinc 37738636 Jul  9 10:01 ATLAS.root_0
[2023-07-09 10:16:56] -rw-r--r-- 2 boinc boinc    17604 Jul  9 10:01 start_atlas.sh
[2023-07-09 10:16:56] -rw-r--r-- 2 boinc boinc   422231 Jul  9 10:01 input.tar.gz
[2023-07-09 10:16:56] -rw------- 1 boinc boinc  1419748 Jul  9 10:10 HITS.pool.root.1
[2023-07-09 10:16:56] -rw------- 1 boinc boinc  2099200 Jul  9 10:16 result.tar.gz
10:16:58 (22165): run_atlas exited; CPU time 239.662255
10:16:58 (22165): called boinc_finish(0)

</stderr_txt>
]]>

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