Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
02:01:33 (24152): wrapper (7.7.26015): starting
02:01:33 (24152): wrapper: running run_atlas (--nthreads 2)
[2023-07-10 02:01:33] Arguments: --nthreads 2
[2023-07-10 02:01:33] Threads: 2
[2023-07-10 02:01:33] Checking for CVMFS
[2023-07-10 02:01:33] Probing /cvmfs/atlas.cern.ch... OK
[2023-07-10 02:01:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-07-10 02:01:33] Running cvmfs_config stat atlas.cern.ch
[2023-07-10 02:01:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-07-10 02:01:34] 2.10.1.0 19668 319 49304 121092 1 102 2394940 4194304 0 130560 0 1657786 99.928 114094 3074 http://cernvmfs.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch DIRECT 1
[2023-07-10 02:01:34] CVMFS is ok
[2023-07-10 02:01:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2023-07-10 02:01:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2023-07-10 02:01:34] Small home clusters do not require a local http proxy but it is suggested if
[2023-07-10 02:01:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2023-07-10 02:01:34] Further information can be found at the LHC@home message board.
[2023-07-10 02:01:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-07-10 02:01:34] Checking for apptainer binary...
[2023-07-10 02:01:34] apptainer is not installed, using version from CVMFS
[2023-07-10 02:01:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-07-10 02:01:35] vps-3dca72ac
[2023-07-10 02:01:35] apptainer works
[2023-07-10 02:01:35] Set ATHENA_PROC_NUMBER=2
[2023-07-10 02:01:35] Set ATHENA_CORE_NUMBER=2
[2023-07-10 02:01:35] Starting ATLAS job with PandaID=5899531165
[2023-07-10 02:01:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-07-10 02:22:00]  *** The last 200 lines of the pilot log: ***
[2023-07-10 02:22:00] 2023-07-10 00:21:02,652 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:05,156 | INFO     | monitor loop #211: job 0:5899531165 is in state 'stageout'
[2023-07-10 02:22:00] 2023-07-10 00:21:05,185 | INFO     | number of running child processes to parent process 2299: 1
[2023-07-10 02:22:00] 2023-07-10 00:21:05,186 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:07,689 | INFO     | monitor loop #212: job 0:5899531165 is in state 'stageout'
[2023-07-10 02:22:00] 2023-07-10 00:21:07,723 | INFO     | number of running child processes to parent process 2299: 1
[2023-07-10 02:22:00] 2023-07-10 00:21:07,723 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:10,227 | INFO     | monitor loop #213: job 0:5899531165 is in state 'stageout'
[2023-07-10 02:22:00] 2023-07-10 00:21:10,255 | INFO     | number of running child processes to parent process 2299: 1
[2023-07-10 02:22:00] 2023-07-10 00:21:10,256 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:10,401 | INFO     | 1170s have passed since pilot start
[2023-07-10 02:22:00] 2023-07-10 00:21:12,758 | INFO     | monitor loop #214: job 0:5899531165 is in state 'stageout'
[2023-07-10 02:22:00] 2023-07-10 00:21:12,820 | INFO     | number of running child processes to parent process 2299: 1
[2023-07-10 02:22:00] 2023-07-10 00:21:12,821 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:15,322 | INFO     | monitor loop #215: job 0:5899531165 is in state 'stageout'
[2023-07-10 02:22:00] 2023-07-10 00:21:15,348 | INFO     | number of running child processes to parent process 2299: 1
[2023-07-10 02:22:00] 2023-07-10 00:21:15,348 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:17,852 | INFO     | monitor loop #216: job 0:5899531165 is in state 'stageout'
[2023-07-10 02:22:00] 2023-07-10 00:21:17,885 | INFO     | number of running child processes to parent process 2299: 1
[2023-07-10 02:22:00] 2023-07-10 00:21:17,885 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:20,388 | INFO     | monitor loop #217: job 0:5899531165 is in state 'stageout'
[2023-07-10 02:22:00] 2023-07-10 00:21:20,419 | INFO     | number of running child processes to parent process 2299: 1
[2023-07-10 02:22:00] 2023-07-10 00:21:20,419 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:22,923 | INFO     | monitor loop #218: job 0:5899531165 is in state 'stageout'
[2023-07-10 02:22:00] 2023-07-10 00:21:22,949 | INFO     | number of running child processes to parent process 2299: 1
[2023-07-10 02:22:00] 2023-07-10 00:21:22,949 | INFO     | maximum number of monitored processes: 8
[2023-07-10 02:22:00] 2023-07-10 00:21:25,012 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-07-10 02:22:00] 2023-07-10 00:21:25,117 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-07-10 02:22:00] 2023-07-10 00:21:25,118 | WARNING  | cache file=/var/lib/boinc-client/slots/0/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/0/agis
[2023-07-10 02:22:00] 2023-07-10 00:21:25,169 | INFO     | transferring file 8e73dea0-d9a5-444a-b37b-dc2d2db98406_5853.1.job.log.tgz from /var/lib/boinc-client/slots/0/PanDA_Pilot-5899531165/8e73dea0-d9a5-444a-b37b-dc2d2db
[2023-07-10 02:22:00] 2023-07-10 00:21:25,169 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-5899531165/8e73dea0-d9a5-444a-b37b-dc2d2db98406_5853.1.job.log.tgz /var/lib/boinc-clie
[2023-07-10 02:22:00] 2023-07-10 00:21:25,186 | INFO     | Adding to output.list: 8e73dea0-d9a5-444a-b37b-dc2d2db98406_5853.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/79/58/8e73dea0-d9a5-4
[2023-07-10 02:22:00] 2023-07-10 00:21:25,187 | INFO     | summary of transferred files:
[2023-07-10 02:22:00] 2023-07-10 00:21:25,187 | INFO     |  -- lfn=8e73dea0-d9a5-444a-b37b-dc2d2db98406_5853.1.job.log.tgz, status_code=0, status=transferred
[2023-07-10 02:22:00] 2023-07-10 00:21:25,188 | INFO     | stage-out finished correctly
[2023-07-10 02:22:00] 2023-07-10 00:21:25,251 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-07-10 02:22:00] 2023-07-10 00:21:25,453 | INFO     | monitor loop #219: job 0:5899531165 is in state 'finished'
[2023-07-10 02:22:00] 2023-07-10 00:21:25,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-10 02:22:00] 2023-07-10 00:21:26,368 | INFO     | job 5899531165 has state=finished
[2023-07-10 02:22:00] 2023-07-10 00:21:26,369 | INFO     | preparing for final server update for job 5899531165 in state='finished'
[2023-07-10 02:22:00] 2023-07-10 00:21:26,369 | INFO     | this job has now completed (state=finished)
[2023-07-10 02:22:00] 2023-07-10 00:21:26,369 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-07-10 02:22:00] 2023-07-10 00:21:26,369 | INFO     | job 5899531165 has finished - writing final server update
[2023-07-10 02:22:00] 2023-07-10 00:21:26,370 | WARNING  | wrong length of table data, x=[1688947801.0, 1688947862.0, 1688947923.0], y=[1894096.0, 1912640.0, 1812494.0] (must be same and length>=4)
[2023-07-10 02:22:00] 2023-07-10 00:21:26,371 | INFO     | total number of processed events: 2 (read)
[2023-07-10 02:22:00] 2023-07-10 00:21:26,373 | INFO     | executing command: lscpu
[2023-07-10 02:22:00] 2023-07-10 00:21:26,395 | INFO     | found 2 cores (1 cores per socket, 2 sockets)
[2023-07-10 02:22:00] 2023-07-10 00:21:26,395 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-07-10 02:22:00] 2023-07-10 00:21:26,421 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-07-10 02:22:00] 2023-07-10 00:21:27,955 | INFO     | monitor loop #220: job 0:5899531165 is in state 'finished'
[2023-07-10 02:22:00] 2023-07-10 00:21:27,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-10 02:22:00] 2023-07-10 00:21:30,464 | INFO     | monitor loop #221: job 0:5899531165 is in state 'finished'
[2023-07-10 02:22:00] 2023-07-10 00:21:30,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-10 02:22:00] 2023-07-10 00:21:32,978 | INFO     | monitor loop #222: job 0:5899531165 is in state 'finished'
[2023-07-10 02:22:00] 2023-07-10 00:21:32,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-10 02:22:00] 2023-07-10 00:21:35,485 | INFO     | monitor loop #223: job 0:5899531165 is in state 'finished'
[2023-07-10 02:22:00] 2023-07-10 00:21:35,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-10 02:22:00] 2023-07-10 00:21:37,987 | INFO     | monitor loop #224: job 0:5899531165 is in state 'finished'
[2023-07-10 02:22:00] 2023-07-10 00:21:37,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-10 02:22:00] 2023-07-10 00:21:38,373 | INFO     | no CPU architecture reporting
[2023-07-10 02:22:00] 2023-07-10 00:21:38,373 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-5899531165/memory_monitor_summary.json (trf name=prmon)
[2023-07-10 02:22:00] 2023-07-10 00:21:38,374 | INFO     | extracted standard info from prmon json
[2023-07-10 02:22:00] 2023-07-10 00:21:38,374 | INFO     | extracted standard memory fields from prmon json
[2023-07-10 02:22:00] 2023-07-10 00:21:38,374 | INFO     | ..............................
[2023-07-10 02:22:00] 2023-07-10 00:21:38,374 | INFO     | . Timing measurements:
[2023-07-10 02:22:00] 2023-07-10 00:21:38,374 | INFO     | . get job = 59 s
[2023-07-10 02:22:00] 2023-07-10 00:21:38,374 | INFO     | . initial setup = 56 s
[2023-07-10 02:22:00] 2023-07-10 00:21:38,375 | INFO     | . payload setup = 7 s
[2023-07-10 02:22:00] 2023-07-10 00:21:38,375 | INFO     | . stage-in = 56 s
[2023-07-10 02:22:00] 2023-07-10 00:21:38,375 | INFO     | . payload execution = 556 s
[2023-07-10 02:22:00] 2023-07-10 00:21:38,375 | INFO     | . stage-out = 433 s
[2023-07-10 02:22:00] 2023-07-10 00:21:38,375 | INFO     | ..............................
[2023-07-10 02:22:00] 2023-07-10 00:21:38,869 | INFO     | 
[2023-07-10 02:22:00] 2023-07-10 00:21:38,869 | INFO     | job summary report
[2023-07-10 02:22:00] 2023-07-10 00:21:38,870 | INFO     | --------------------------------------------------
[2023-07-10 02:22:00] 2023-07-10 00:21:38,870 | INFO     | PanDA job id: 5899531165
[2023-07-10 02:22:00] 2023-07-10 00:21:38,870 | INFO     | task id: NULL
[2023-07-10 02:22:00] 2023-07-10 00:21:38,870 | INFO     | errors: (none)
[2023-07-10 02:22:00] 2023-07-10 00:21:38,870 | INFO     | status: LOG_TRANSFER = DONE 
[2023-07-10 02:22:00] 2023-07-10 00:21:38,870 | INFO     | pilot state: finished 
[2023-07-10 02:22:00] 2023-07-10 00:21:38,870 | INFO     | transexitcode: 0
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | exeerrorcode: 0
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | exeerrordiag: 
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | exitcode: 0
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | exitmsg: OK
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | cpuconsumptiontime: 521 s
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | nevents: 2
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | neventsw: 0
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | pid: 2299
[2023-07-10 02:22:00] 2023-07-10 00:21:38,871 | INFO     | pgrp: 2299
[2023-07-10 02:22:00] 2023-07-10 00:21:38,872 | INFO     | corecount: 2
[2023-07-10 02:22:00] 2023-07-10 00:21:38,872 | INFO     | event service: False
[2023-07-10 02:22:00] 2023-07-10 00:21:38,872 | INFO     | sizes: {0: 2471923, 1: 2473466, 12: 2473612, 22: 2473640, 33: 2473668, 43: 2473696, 54: 2473852, 60: 2473940, 65: 2473968, 567: 2498100, 1002: 2507720, 1015: 25078
[2023-07-10 02:22:00] 2023-07-10 00:21:38,872 | INFO     | --------------------------------------------------
[2023-07-10 02:22:00] 2023-07-10 00:21:38,872 | INFO     | 
[2023-07-10 02:22:00] 2023-07-10 00:21:38,872 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2023-07-10 02:22:00] 2023-07-10 00:21:38,890 | INFO     | queue jobs had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,890 | INFO     | queue payloads had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,891 | INFO     | queue data_in had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,891 | INFO     | queue data_out had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,891 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,891 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,891 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,891 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,891 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,892 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,892 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,892 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,893 | INFO     | queue completed_jobids has 1 job(s)
[2023-07-10 02:22:00] 2023-07-10 00:21:38,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,893 | INFO     | queue messages had 0 job(s) [purged]
[2023-07-10 02:22:00] 2023-07-10 00:21:38,893 | INFO     | job 5899531165 has completed (purged errors)
[2023-07-10 02:22:00] 2023-07-10 00:21:38,894 | INFO     | overall cleanup function is called
[2023-07-10 02:22:00] 2023-07-10 00:21:39,904 | INFO     | --- collectZombieJob: --- 10, [2299]
[2023-07-10 02:22:00] 2023-07-10 00:21:39,904 | INFO     | zombie collector trying to kill pid 2299
[2023-07-10 02:22:00] 2023-07-10 00:21:39,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-07-10 02:22:00] 2023-07-10 00:21:40,910 | INFO     | collected zombie processes
[2023-07-10 02:22:00] 2023-07-10 00:21:40,910 | INFO     | will now attempt to kill all subprocesses of pid=2299
[2023-07-10 02:22:00] 2023-07-10 00:21:40,949 | INFO     | process IDs to be killed: [2299] (in reverse order)
[2023-07-10 02:22:00] 2023-07-10 00:21:40,974 | WARNING  | found no corresponding commands to process id(s)
[2023-07-10 02:22:00] 2023-07-10 00:21:40,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-07-10 02:22:00] 2023-07-10 00:21:40,975 | INFO     | ready for new job
[2023-07-10 02:22:00] 2023-07-10 00:21:40,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-07-10 02:22:00] 2023-07-10 00:21:40,976 | INFO     | ****************************************
[2023-07-10 02:22:00] 2023-07-10 00:21:40,976 | INFO     | ***  PanDA Pilot version 3.6.1 (31)  ***
[2023-07-10 02:22:00] 2023-07-10 00:21:40,976 | INFO     | ****************************************
[2023-07-10 02:22:00] 2023-07-10 00:21:40,976 | INFO     | 
[2023-07-10 02:22:00] 2023-07-10 00:21:40,976 | INFO     | pilot is running in a VM
[2023-07-10 02:22:00] 2023-07-10 00:21:40,976 | INFO     | architecture information:
[2023-07-10 02:22:00] 2023-07-10 00:21:40,977 | INFO     | executing command: cat /etc/os-release
[2023-07-10 02:22:00] 2023-07-10 00:21:40,992 | INFO     | cat /etc/os-release:
[2023-07-10 02:22:00] NAME="CentOS Linux"
[2023-07-10 02:22:00] VERSION="7 (Core)"
[2023-07-10 02:22:00] ID="centos"
[2023-07-10 02:22:00] ID_LIKE="rhel fedora"
[2023-07-10 02:22:00] VERSION_ID="7"
[2023-07-10 02:22:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-07-10 02:22:00] ANSI_COLOR="0;31"
[2023-07-10 02:22:00] CPE_NAME="cpe:/o:centos:centos:7"
[2023-07-10 02:22:00] HOME_URL="https://www.centos.org/"
[2023-07-10 02:22:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-07-10 02:22:00] 
[2023-07-10 02:22:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-07-10 02:22:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-07-10 02:22:00] REDHAT_SUPPORT_PRODUCT="centos"
[2023-07-10 02:22:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-07-10 02:22:00] 
[2023-07-10 02:22:00] 2023-07-10 00:21:40,992 | INFO     | ****************************************
[2023-07-10 02:22:00] 2023-07-10 00:21:41,495 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2023-07-10 02:22:00] 2023-07-10 00:21:41,511 | INFO     | sufficient remaining disk space (58027147264 B)
[2023-07-10 02:22:00] 2023-07-10 00:21:41,512 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-07-10 02:22:00] 2023-07-10 00:21:41,512 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-07-10 02:22:00] 2023-07-10 00:21:41,512 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-07-10 02:22:00] 2023-07-10 00:21:41,512 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-07-10 02:22:00] 2023-07-10 00:21:41,512 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-07-10 02:22:00] 2023-07-10 00:21:41,513 | INFO     | found 0 job(s) in 20 queues
[2023-07-10 02:22:00] 2023-07-10 00:21:41,513 | INFO     | aborting loop
[2023-07-10 02:22:00] 2023-07-10 00:21:41,513 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-07-10 02:22:00] 2023-07-10 00:21:41,513 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-07-10 02:22:00] 2023-07-10 00:21:42,517 | INFO     | [job] retrieve thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:42,519 | INFO     | [job] job monitor thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:42,557 | INFO     | [payload] control thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:42,751 | INFO     | [payload] failed_post thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:42,996 | INFO     | [data] copytool_in thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:43,205 | INFO     | [job] control thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:43,363 | INFO     | [data] control thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:43,395 | INFO     | [job] validate thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:43,449 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-07-10 02:22:00] 2023-07-10 00:21:43,518 | INFO     | [data] copytool_out thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:43,694 | INFO     | [job] create_data_payload thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:43,720 | INFO     | [payload] validate_post thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:43,814 | INFO     | [payload] validate_pre thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:43,814 | INFO     | [payload] execute_payloads thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:44,454 | INFO     | [job] queue monitor thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:44,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-07-10 02:22:00] 2023-07-10 00:21:48,841 | INFO     | [data] queue_monitor thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:51,546 | INFO     | job.realtimelogging is not enabled
[2023-07-10 02:22:00] 2023-07-10 00:21:52,548 | INFO     | [payload] run_realtimelog thread has finished
[2023-07-10 02:22:00] 2023-07-10 00:21:53,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140634063398720)>', '<ExcThread(monitor, started 140633637369600)>']
[2023-07-10 02:22:00] 2023-07-10 00:21:54,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-07-10 02:22:00] 2023-07-10 00:21:54,553 | INFO     | [monitor] control thread has ended
[2023-07-10 02:22:00] 2023-07-10 00:21:59,013 | INFO     | end of generic workflow (traces error code: 0)
[2023-07-10 02:22:00] 2023-07-10 00:21:59,014 | INFO     | traces error code: 0
[2023-07-10 02:22:00] 2023-07-10 00:21:59,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-07-10 02:22:00] 2023-07-10 00:21:59,090 [wrapper] ==== pilot stdout END ====
[2023-07-10 02:22:00] 2023-07-10 00:21:59,093 [wrapper] ==== wrapper stdout RESUME ====
[2023-07-10 02:22:00] 2023-07-10 00:21:59,096 [wrapper] pilotpid: 27291
[2023-07-10 02:22:00] 2023-07-10 00:21:59,099 [wrapper] Pilot exit status: 0
[2023-07-10 02:22:00] 2023-07-10 00:21:59,111 [wrapper] pandaids: 5899531165
[2023-07-10 02:22:00] 2023-07-10 00:21:59,116 [wrapper] apfmon messages muted
[2023-07-10 02:22:00] 2023-07-10 00:21:59,118 [wrapper] Test setup, not cleaning
[2023-07-10 02:22:00] 2023-07-10 00:21:59,120 [wrapper] ==== wrapper stdout END ====
[2023-07-10 02:22:00] 2023-07-10 00:21:59,122 [wrapper] ==== wrapper stderr END ====
[2023-07-10 02:22:00] 2023-07-10 00:21:59,125 [wrapper] wrapperexiting ec=0, duration=1224
[2023-07-10 02:22:00] 2023-07-10 00:21:59,127 [wrapper] apfmon messages muted
[2023-07-10 02:22:00]  *** Error codes and diagnostics ***
[2023-07-10 02:22:00]     "exeErrorCode": 0,
[2023-07-10 02:22:00]     "exeErrorDiag": "",
[2023-07-10 02:22:00]     "pilotErrorCode": 0,
[2023-07-10 02:22:00]     "pilotErrorDiag": "",
[2023-07-10 02:22:00]  *** Listing of results directory ***
[2023-07-10 02:22:00] total 43800
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc   410964 Jul  9 23:34 pilot3.tar.gz
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc     4388 Jul  9 23:53 queuedata.json
[2023-07-10 02:22:00] -rwx------ 1 boinc boinc    27012 Jul  9 23:53 runpilot2-wrapper.sh
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc      107 Jul 10 02:01 wrapper_26015_x86_64-pc-linux-gnu
[2023-07-10 02:22:00] -rwxr-xr-x 1 boinc boinc     7986 Jul 10 02:01 run_atlas
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc      112 Jul 10 02:01 job.xml
[2023-07-10 02:22:00] -rw-r--r-- 2 boinc boinc    17600 Jul 10 02:01 start_atlas.sh
[2023-07-10 02:22:00] drwxrwx--x 2 boinc boinc     4096 Jul 10 02:01 shared
[2023-07-10 02:22:00] -rw-r--r-- 2 boinc boinc   422295 Jul 10 02:01 input.tar.gz
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc     6142 Jul 10 02:01 init_data.xml
[2023-07-10 02:22:00] -rw-r--r-- 2 boinc boinc 36949600 Jul 10 02:01 EVNT.04972714._000039.pool.root.1
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc        0 Jul 10 02:01 boinc_lockfile
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc     2751 Jul 10 02:01 pandaJob.out
[2023-07-10 02:22:00] -rw------- 1 boinc boinc      424 Jul 10 02:01 setup.sh.local
[2023-07-10 02:22:00] -rw------- 1 boinc boinc  1013722 Jul 10 02:01 agis_schedconf.cvmfs.json
[2023-07-10 02:22:00] -rw------- 1 boinc boinc  1382335 Jul 10 02:02 cric_ddmendpoints.json
[2023-07-10 02:22:00] drwx------ 4 boinc boinc     4096 Jul 10 02:03 pilot3
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc      532 Jul 10 02:11 boinc_task_state.xml
[2023-07-10 02:22:00] -rw------- 1 boinc boinc  1599241 Jul 10 02:14 output.1.8e73dea0-d9a5-444a-b37b-dc2d2db98406_5853.pool.root
[2023-07-10 02:22:00] -rw------- 1 boinc boinc     1019 Jul 10 02:14 memory_monitor_summary.json
[2023-07-10 02:22:00] -rw------- 1 boinc boinc   435631 Jul 10 02:17 8e73dea0-d9a5-444a-b37b-dc2d2db98406_5853.1.job.log.tgz
[2023-07-10 02:22:00] -rw------- 1 boinc boinc     8574 Jul 10 02:21 heartbeat.json
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc       25 Jul 10 02:21 wrapper_checkpoint.txt
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc     8192 Jul 10 02:21 boinc_mmap_file
[2023-07-10 02:22:00] -rw------- 1 boinc boinc     4173 Jul 10 02:21 pilotlog.txt
[2023-07-10 02:22:00] -rw------- 1 boinc boinc   183528 Jul 10 02:21 8e73dea0-d9a5-444a-b37b-dc2d2db98406_5853.1.job.log
[2023-07-10 02:22:00] -rw------- 1 boinc boinc      460 Jul 10 02:21 output.list
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc      744 Jul 10 02:21 runtime_log
[2023-07-10 02:22:00] -rw------- 1 boinc boinc  2242560 Jul 10 02:21 result.tar.gz
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc    12081 Jul 10 02:21 runtime_log.err
[2023-07-10 02:22:00] -rw------- 1 boinc boinc      631 Jul 10 02:21 bz3MDmkWrc3n7Olcko1bjSoqABFKDmABFKDm7AsVDmo2MKDmCtsR1m.diag
[2023-07-10 02:22:00] -rw-r--r-- 1 boinc boinc    23139 Jul 10 02:22 stderr.txt
[2023-07-10 02:22:00] HITS file was successfully produced:
[2023-07-10 02:22:00] -rw------- 1 boinc boinc 1599241 Jul 10 02:14 shared/HITS.pool.root.1
[2023-07-10 02:22:00]  *** Contents of shared directory: ***
[2023-07-10 02:22:00] total 40276
[2023-07-10 02:22:00] -rw-r--r-- 2 boinc boinc    17600 Jul 10 02:01 start_atlas.sh
[2023-07-10 02:22:00] -rw-r--r-- 2 boinc boinc   422295 Jul 10 02:01 input.tar.gz
[2023-07-10 02:22:00] -rw-r--r-- 2 boinc boinc 36949600 Jul 10 02:01 ATLAS.root_0
[2023-07-10 02:22:00] -rw------- 1 boinc boinc  1599241 Jul 10 02:14 HITS.pool.root.1
[2023-07-10 02:22:00] -rw------- 1 boinc boinc  2242560 Jul 10 02:21 result.tar.gz
02:22:01 (24152): run_atlas exited; CPU time 512.584321
02:22:01 (24152): called boinc_finish(0)

</stderr_txt>
]]>

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