Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
04:33:06 (7770): wrapper (7.7.26015): starting
04:33:06 (7770): wrapper: running run_atlas (--nthreads 4)
[2023-07-19 04:33:06] Arguments: --nthreads 4
[2023-07-19 04:33:06] Threads: 4
[2023-07-19 04:33:06] Checking for CVMFS
[2023-07-19 04:33:10] Probing /cvmfs/atlas.cern.ch... OK
[2023-07-19 04:33:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-07-19 04:33:11] Running cvmfs_config stat atlas.cern.ch
[2023-07-19 04:33:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-07-19 04:33:11] 2.9.0.0 7917 0 22808 121444 3 1 4011165 4194305 0 130560 0 0 0.000 829 247 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-07-19 04:33:11] CVMFS is ok
[2023-07-19 04:33:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-07-19 04:33:11] Checking for apptainer binary...
[2023-07-19 04:33:11] Using apptainer found in PATH at /usr/bin/apptainer
[2023-07-19 04:33:11] Running /usr/bin/apptainer --version
[2023-07-19 04:33:11] apptainer version 1.0.3
[2023-07-19 04:33:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-07-19 04:33:12] TeeC16
[2023-07-19 04:33:12] apptainer works
[2023-07-19 04:33:12] Set ATHENA_PROC_NUMBER=4
[2023-07-19 04:33:12] Set ATHENA_CORE_NUMBER=4
[2023-07-19 04:33:12] Starting ATLAS job with PandaID=5907647993
[2023-07-19 04:33:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-07-19 04:57:11]  *** The last 200 lines of the pilot log: ***
[2023-07-19 04:57:11] 2023-07-19 03:56:20,107 | INFO     | maximum number of monitored processes: 5
[2023-07-19 04:57:11] 2023-07-19 03:56:22,610 | INFO     | monitor loop #194: job 0:5907647993 is in state 'stageout'
[2023-07-19 04:57:11] 2023-07-19 03:56:22,643 | INFO     | number of running child processes to parent process 18858: 1
[2023-07-19 04:57:11] 2023-07-19 03:56:22,643 | INFO     | maximum number of monitored processes: 5
[2023-07-19 04:57:11] 2023-07-19 03:56:25,146 | INFO     | monitor loop #195: job 0:5907647993 is in state 'stageout'
[2023-07-19 04:57:11] 2023-07-19 03:56:25,190 | INFO     | number of running child processes to parent process 18858: 1
[2023-07-19 04:57:11] 2023-07-19 03:56:25,191 | INFO     | maximum number of monitored processes: 5
[2023-07-19 04:57:11] 2023-07-19 03:56:27,691 | INFO     | monitor loop #196: job 0:5907647993 is in state 'stageout'
[2023-07-19 04:57:11] 2023-07-19 03:56:27,692 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 780813 B
[2023-07-19 04:57:11] 2023-07-19 03:56:27,692 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 9549 B
[2023-07-19 04:57:11] 2023-07-19 03:56:27,692 | INFO     | executing command: df -mP /home/m/BOINC/slots/1
[2023-07-19 04:57:11] 2023-07-19 03:56:27,704 | INFO     | sufficient remaining disk space (422922158080 B)
[2023-07-19 04:57:11] 2023-07-19 03:56:27,704 | INFO     | work directory size check will use 61362667520 B as a max limit (10% grace limit added)
[2023-07-19 04:57:11] 2023-07-19 03:56:27,704 | INFO     | size of work directory /home/m/BOINC/slots/1/PanDA_Pilot-5907647993: 1131011 B (within 61362667520 B limit)
[2023-07-19 04:57:11] 2023-07-19 03:56:27,704 | INFO     | pfn file=/home/m/BOINC/slots/1/PanDA_Pilot-5907647993/output.1.a0297942-1328-41ce-bf0b-37ddc374267f_15101.pool.root does not exist (skip from workdir size calculat
[2023-07-19 04:57:11] 2023-07-19 03:56:27,705 | INFO     | total size of present files: 0 B (workdir size: 1131011 B)
[2023-07-19 04:57:11] 2023-07-19 03:56:27,705 | INFO     | output file size check: skipping output file /home/m/BOINC/slots/1/PanDA_Pilot-5907647993/output.1.a0297942-1328-41ce-bf0b-37ddc374267f_15101.pool.root since it do
[2023-07-19 04:57:11] 2023-07-19 03:56:27,749 | INFO     | number of running child processes to parent process 18858: 1
[2023-07-19 04:57:11] 2023-07-19 03:56:27,749 | INFO     | maximum number of monitored processes: 5
[2023-07-19 04:57:11] 2023-07-19 03:56:30,252 | INFO     | monitor loop #197: job 0:5907647993 is in state 'stageout'
[2023-07-19 04:57:11] 2023-07-19 03:56:30,298 | INFO     | number of running child processes to parent process 18858: 1
[2023-07-19 04:57:11] 2023-07-19 03:56:30,298 | INFO     | maximum number of monitored processes: 5
[2023-07-19 04:57:11] 2023-07-19 03:56:32,800 | INFO     | monitor loop #198: job 0:5907647993 is in state 'stageout'
[2023-07-19 04:57:11] 2023-07-19 03:56:32,835 | INFO     | number of running child processes to parent process 18858: 1
[2023-07-19 04:57:11] 2023-07-19 03:56:32,835 | INFO     | maximum number of monitored processes: 5
[2023-07-19 04:57:11] 2023-07-19 03:56:35,338 | INFO     | monitor loop #199: job 0:5907647993 is in state 'stageout'
[2023-07-19 04:57:11] 2023-07-19 03:56:35,386 | INFO     | number of running child processes to parent process 18858: 1
[2023-07-19 04:57:11] 2023-07-19 03:56:35,386 | INFO     | maximum number of monitored processes: 5
[2023-07-19 04:57:11] 2023-07-19 03:56:37,889 | INFO     | monitor loop #200: job 0:5907647993 is in state 'stageout'
[2023-07-19 04:57:11] 2023-07-19 03:56:37,925 | INFO     | number of running child processes to parent process 18858: 1
[2023-07-19 04:57:11] 2023-07-19 03:56:37,925 | INFO     | maximum number of monitored processes: 5
[2023-07-19 04:57:11] 2023-07-19 03:56:38,959 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-07-19 04:57:11] 2023-07-19 03:56:39,094 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-07-19 04:57:11] 2023-07-19 03:56:39,094 | WARNING  | cache file=/home/m/BOINC/slots/1/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/1/agis_ddmendpoints.ag
[2023-07-19 04:57:11] 2023-07-19 03:56:39,135 | INFO     | transferring file a0297942-1328-41ce-bf0b-37ddc374267f_15101.1.job.log.tgz from /home/m/BOINC/slots/1/PanDA_Pilot-5907647993/a0297942-1328-41ce-bf0b-37ddc374267f_1
[2023-07-19 04:57:11] 2023-07-19 03:56:39,135 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/1/PanDA_Pilot-5907647993/a0297942-1328-41ce-bf0b-37ddc374267f_15101.1.job.log.tgz /home/m/BOINC/slots/1/a029
[2023-07-19 04:57:11] 2023-07-19 03:56:39,150 | INFO     | Adding to output.list: a0297942-1328-41ce-bf0b-37ddc374267f_15101.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/27/f0/a0297942-1328-
[2023-07-19 04:57:11] 2023-07-19 03:56:39,151 | INFO     | summary of transferred files:
[2023-07-19 04:57:11] 2023-07-19 03:56:39,151 | INFO     |  -- lfn=a0297942-1328-41ce-bf0b-37ddc374267f_15101.1.job.log.tgz, status_code=0, status=transferred
[2023-07-19 04:57:11] 2023-07-19 03:56:39,151 | INFO     | stage-out finished correctly
[2023-07-19 04:57:11] 2023-07-19 03:56:40,428 | INFO     | monitor loop #201: job 0:5907647993 is in state 'finished'
[2023-07-19 04:57:11] 2023-07-19 03:56:40,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-19 04:57:11] 2023-07-19 03:56:40,639 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-07-19 04:57:11] 2023-07-19 03:56:42,375 | INFO     | job 5907647993 has state=finished
[2023-07-19 04:57:11] 2023-07-19 03:56:42,375 | INFO     | preparing for final server update for job 5907647993 in state='finished'
[2023-07-19 04:57:11] 2023-07-19 03:56:42,376 | INFO     | this job has now completed (state=finished)
[2023-07-19 04:57:11] 2023-07-19 03:56:42,376 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-07-19 04:57:11] 2023-07-19 03:56:42,376 | INFO     | job 5907647993 has finished - writing final server update
[2023-07-19 04:57:11] 2023-07-19 03:56:42,376 | WARNING  | wrong length of table data, x=[1689738163.0, 1689738224.0, 1689738285.0, 1689738346.0, 1689738407.0, 1689738468.0, 1689738529.0], y=[1640438.0, 1647202.0, 1654696.
[2023-07-19 04:57:11] 2023-07-19 03:56:42,377 | INFO     | total number of processed events: 2 (read)
[2023-07-19 04:57:11] 2023-07-19 03:56:42,394 | INFO     | executing command: lscpu
[2023-07-19 04:57:11] 2023-07-19 03:56:42,407 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-07-19 04:57:11] 2023-07-19 03:56:42,408 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-07-19 04:57:11] 2023-07-19 03:56:42,431 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-07-19 04:57:11] 2023-07-19 03:56:42,931 | INFO     | monitor loop #202: job 0:5907647993 is in state 'finished'
[2023-07-19 04:57:11] 2023-07-19 03:56:42,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-19 04:57:11] 2023-07-19 03:56:45,434 | INFO     | monitor loop #203: job 0:5907647993 is in state 'finished'
[2023-07-19 04:57:11] 2023-07-19 03:56:45,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-19 04:57:11] 2023-07-19 03:56:47,937 | INFO     | monitor loop #204: job 0:5907647993 is in state 'finished'
[2023-07-19 04:57:11] 2023-07-19 03:56:47,937 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-19 04:57:11] 2023-07-19 03:56:49,988 | INFO     | CPU arch script returned: x86-64-v2
[2023-07-19 04:57:11] 2023-07-19 03:56:49,989 | INFO     | using path: /home/m/BOINC/slots/1/PanDA_Pilot-5907647993/memory_monitor_summary.json (trf name=prmon)
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | extracted standard info from prmon json
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | extracted standard memory fields from prmon json
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | ..............................
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | . Timing measurements:
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | . get job = 79 s
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | . initial setup = 58 s
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | . payload setup = 6 s
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | . stage-in = 49 s
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | . payload execution = 808 s
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | . stage-out = 334 s
[2023-07-19 04:57:11] 2023-07-19 03:56:49,990 | INFO     | ..............................
[2023-07-19 04:57:11] 2023-07-19 03:56:50,049 | INFO     | 
[2023-07-19 04:57:11] 2023-07-19 03:56:50,049 | INFO     | job summary report
[2023-07-19 04:57:11] 2023-07-19 03:56:50,049 | INFO     | --------------------------------------------------
[2023-07-19 04:57:11] 2023-07-19 03:56:50,049 | INFO     | PanDA job id: 5907647993
[2023-07-19 04:57:11] 2023-07-19 03:56:50,049 | INFO     | task id: NULL
[2023-07-19 04:57:11] 2023-07-19 03:56:50,049 | INFO     | errors: (none)
[2023-07-19 04:57:11] 2023-07-19 03:56:50,049 | INFO     | status: LOG_TRANSFER = DONE 
[2023-07-19 04:57:11] 2023-07-19 03:56:50,049 | INFO     | pilot state: finished 
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | transexitcode: 0
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | exeerrorcode: 0
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | exeerrordiag: 
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | exitcode: 0
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | exitmsg: OK
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | cpuconsumptiontime: 664 s
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | nevents: 2
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | neventsw: 0
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | pid: 18858
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | pgrp: 18858
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | corecount: 4
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | event service: False
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | sizes: {0: 2456329, 11: 2456475, 22: 2456503, 32: 2456531, 43: 2456559, 53: 2447219, 54: 2456803, 64: 2456831, 819: 2479513, 820: 2479512, 1155: 2488876, 1157: 248
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | --------------------------------------------------
[2023-07-19 04:57:11] 2023-07-19 03:56:50,050 | INFO     | 
[2023-07-19 04:57:11] 2023-07-19 03:56:50,051 | INFO     | executing command: ls -lF /home/m/BOINC/slots/1
[2023-07-19 04:57:11] 2023-07-19 03:56:50,066 | INFO     | queue jobs had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,066 | INFO     | queue payloads had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue data_in had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue data_out had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue completed_jobids has 1 job(s)
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,068 | INFO     | queue messages had 0 job(s) [purged]
[2023-07-19 04:57:11] 2023-07-19 03:56:50,069 | INFO     | job 5907647993 has completed (purged errors)
[2023-07-19 04:57:11] 2023-07-19 03:56:50,069 | INFO     | overall cleanup function is called
[2023-07-19 04:57:11] 2023-07-19 03:56:51,075 | INFO     | --- collectZombieJob: --- 10, [18858]
[2023-07-19 04:57:11] 2023-07-19 03:56:51,076 | INFO     | zombie collector trying to kill pid 18858
[2023-07-19 04:57:11] 2023-07-19 03:56:51,076 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-07-19 04:57:11] 2023-07-19 03:56:52,081 | INFO     | collected zombie processes
[2023-07-19 04:57:11] 2023-07-19 03:56:52,081 | INFO     | will now attempt to kill all subprocesses of pid=18858
[2023-07-19 04:57:11] 2023-07-19 03:56:52,128 | INFO     | process IDs to be killed: [18858] (in reverse order)
[2023-07-19 04:57:11] 2023-07-19 03:56:52,162 | WARNING  | found no corresponding commands to process id(s)
[2023-07-19 04:57:11] 2023-07-19 03:56:52,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-07-19 04:57:11] 2023-07-19 03:56:52,163 | INFO     | ready for new job
[2023-07-19 04:57:11] 2023-07-19 03:56:52,163 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-07-19 04:57:11] 2023-07-19 03:56:52,164 | INFO     | *************************************
[2023-07-19 04:57:11] 2023-07-19 03:56:52,164 | INFO     | ***  PanDA Pilot version 3.6.4.7  ***
[2023-07-19 04:57:11] 2023-07-19 03:56:52,164 | INFO     | *************************************
[2023-07-19 04:57:11] 2023-07-19 03:56:52,164 | INFO     | 
[2023-07-19 04:57:11] 2023-07-19 03:56:52,182 | INFO     | architecture information:
[2023-07-19 04:57:11] 2023-07-19 03:56:52,182 | INFO     | executing command: cat /etc/os-release
[2023-07-19 04:57:11] 2023-07-19 03:56:52,193 | INFO     | cat /etc/os-release:
[2023-07-19 04:57:11] NAME="CentOS Linux"
[2023-07-19 04:57:11] VERSION="7 (Core)"
[2023-07-19 04:57:11] ID="centos"
[2023-07-19 04:57:11] ID_LIKE="rhel fedora"
[2023-07-19 04:57:11] VERSION_ID="7"
[2023-07-19 04:57:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-07-19 04:57:11] ANSI_COLOR="0;31"
[2023-07-19 04:57:11] CPE_NAME="cpe:/o:centos:centos:7"
[2023-07-19 04:57:11] HOME_URL="https://www.centos.org/"
[2023-07-19 04:57:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-07-19 04:57:11] 
[2023-07-19 04:57:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-07-19 04:57:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-07-19 04:57:11] REDHAT_SUPPORT_PRODUCT="centos"
[2023-07-19 04:57:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-07-19 04:57:11] 
[2023-07-19 04:57:11] 2023-07-19 03:56:52,194 | INFO     | *************************************
[2023-07-19 04:57:11] 2023-07-19 03:56:52,697 | INFO     | executing command: df -mP /home/m/BOINC/slots/1
[2023-07-19 04:57:11] 2023-07-19 03:56:52,709 | INFO     | sufficient remaining disk space (422923206656 B)
[2023-07-19 04:57:11] 2023-07-19 03:56:52,709 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-07-19 04:57:11] 2023-07-19 03:56:52,709 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-07-19 04:57:11] 2023-07-19 03:56:52,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-07-19 04:57:11] 2023-07-19 03:56:52,948 | WARNING  | job monitor detected an abort_job request (signal=None)
[2023-07-19 04:57:11] 2023-07-19 03:56:52,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-07-19 04:57:11] 2023-07-19 03:56:52,952 | INFO     | will abort loop
[2023-07-19 04:57:11] 2023-07-19 03:56:53,657 | INFO     | found 0 job(s) in 20 queues
[2023-07-19 04:57:11] 2023-07-19 03:56:53,657 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-07-19 04:57:11] 2023-07-19 03:56:53,658 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-07-19 04:57:11] 2023-07-19 03:56:53,715 | INFO     | [job] retrieve thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:53,755 | INFO     | [job] control thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:53,835 | INFO     | [payload] control thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:53,861 | INFO     | [payload] failed_post thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:53,957 | INFO     | [job] job monitor thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:54,119 | INFO     | [data] copytool_in thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:54,146 | INFO     | [data] control thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:54,374 | INFO     | [payload] validate_post thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:54,637 | INFO     | [job] validate thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:54,638 | INFO     | [payload] execute_payloads thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:54,715 | INFO     | [data] copytool_out thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:54,806 | INFO     | [job] create_data_payload thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:54,922 | INFO     | [payload] validate_pre thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:55,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-07-19 04:57:11] 2023-07-19 03:56:55,707 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-07-19 04:57:11] 2023-07-19 03:56:56,065 | INFO     | [job] queue monitor thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:56:59,713 | INFO     | [data] queue_monitor thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:57:03,313 | INFO     | job.realtimelogging is not enabled
[2023-07-19 04:57:11] 2023-07-19 03:57:04,318 | INFO     | [payload] run_realtimelog thread has finished
[2023-07-19 04:57:11] 2023-07-19 03:57:06,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928621098816)>', '<ExcThread(monitor, started 139928197383936)>']
[2023-07-19 04:57:11] 2023-07-19 03:57:06,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-07-19 04:57:11] 2023-07-19 03:57:06,722 | INFO     | [monitor] control thread has ended
[2023-07-19 04:57:11] 2023-07-19 03:57:11,291 | INFO     | end of generic workflow (traces error code: 0)
[2023-07-19 04:57:11] 2023-07-19 03:57:11,292 | INFO     | traces error code: 0
[2023-07-19 04:57:11] 2023-07-19 03:57:11,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-07-19 04:57:11] 2023-07-19 03:57:11,339 [wrapper] ==== pilot stdout END ====
[2023-07-19 04:57:11] 2023-07-19 03:57:11,342 [wrapper] ==== wrapper stdout RESUME ====
[2023-07-19 04:57:11] 2023-07-19 03:57:11,345 [wrapper] pilotpid: 11432
[2023-07-19 04:57:11] 2023-07-19 03:57:11,348 [wrapper] Pilot exit status: 0
[2023-07-19 04:57:11] 2023-07-19 03:57:11,358 [wrapper] pandaids: 5907647993
[2023-07-19 04:57:11] 2023-07-19 03:57:11,364 [wrapper] apfmon messages muted
[2023-07-19 04:57:11] 2023-07-19 03:57:11,368 [wrapper] Test setup, not cleaning
[2023-07-19 04:57:11] 2023-07-19 03:57:11,371 [wrapper] ==== wrapper stdout END ====
[2023-07-19 04:57:11] 2023-07-19 03:57:11,374 [wrapper] ==== wrapper stderr END ====
[2023-07-19 04:57:11] 2023-07-19 03:57:11,380 [wrapper] wrapperexiting ec=0, duration=1439
[2023-07-19 04:57:11] 2023-07-19 03:57:11,383 [wrapper] apfmon messages muted
[2023-07-19 04:57:11]  *** Error codes and diagnostics ***
[2023-07-19 04:57:11]     "exeErrorCode": 0,
[2023-07-19 04:57:11]     "exeErrorDiag": "",
[2023-07-19 04:57:11]     "pilotErrorCode": 0,
[2023-07-19 04:57:11]     "pilotErrorDiag": "",
[2023-07-19 04:57:11]  *** Listing of results directory ***
[2023-07-19 04:57:11] total 44672
[2023-07-19 04:57:11] -rwx------ 1 m m    27012 Jul 19 04:28 runpilot2-wrapper.sh
[2023-07-19 04:57:11] -rw-r--r-- 1 m m     4388 Jul 19 04:28 queuedata.json
[2023-07-19 04:57:11] -rw-r--r-- 1 m m   418016 Jul 19 04:28 pilot3.tar.gz
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m      107 Jul 19 04:33 wrapper_26015_x86_64-pc-linux-gnu
[2023-07-19 04:57:11] -rwxr-xr-x 1 m m     7986 Jul 19 04:33 run_atlas
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m      112 Jul 19 04:33 job.xml
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m     5728 Jul 19 04:33 init_data.xml
[2023-07-19 04:57:11] -rw-r--r-- 2 m m 37965264 Jul 19 04:33 EVNT.04972714._000027.pool.root.1
[2023-07-19 04:57:11] -rw-r--r-- 2 m m    17604 Jul 19 04:33 start_atlas.sh
[2023-07-19 04:57:11] drwxrwx--x 2 m m     4096 Jul 19 04:33 shared
[2023-07-19 04:57:11] -rw-r--r-- 2 m m   428815 Jul 19 04:33 input.tar.gz
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m        0 Jul 19 04:33 boinc_lockfile
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m     2756 Jul 19 04:33 pandaJob.out
[2023-07-19 04:57:11] -rw------- 1 m m      424 Jul 19 04:33 setup.sh.local
[2023-07-19 04:57:11] -rw------- 1 m m  1015202 Jul 19 04:33 agis_schedconf.cvmfs.json
[2023-07-19 04:57:11] -rw------- 1 m m  1370854 Jul 19 04:34 cric_ddmendpoints.json
[2023-07-19 04:57:11] drwx------ 4 m m     4096 Jul 19 04:36 pilot3
[2023-07-19 04:57:11] -rw------- 1 m m  1808621 Jul 19 04:50 output.1.a0297942-1328-41ce-bf0b-37ddc374267f_15101.pool.root
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m      533 Jul 19 04:50 boinc_task_state.xml
[2023-07-19 04:57:11] -rw------- 1 m m     1013 Jul 19 04:51 memory_monitor_summary.json
[2023-07-19 04:57:11] -rw------- 1 m m   161865 Jul 19 04:53 a0297942-1328-41ce-bf0b-37ddc374267f_15101.1.job.log.tgz
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m     8192 Jul 19 04:56 boinc_mmap_file
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m       25 Jul 19 04:56 wrapper_checkpoint.txt
[2023-07-19 04:57:11] -rw------- 1 m m     8750 Jul 19 04:56 heartbeat.json
[2023-07-19 04:57:11] -rw------- 1 m m     4064 Jul 19 04:57 pilotlog.txt
[2023-07-19 04:57:11] -rw------- 1 m m   192147 Jul 19 04:57 a0297942-1328-41ce-bf0b-37ddc374267f_15101.1.job.log
[2023-07-19 04:57:11] -rw------- 1 m m      464 Jul 19 04:57 output.list
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m      748 Jul 19 04:57 runtime_log
[2023-07-19 04:57:11] -rw------- 1 m m  2181120 Jul 19 04:57 result.tar.gz
[2023-07-19 04:57:11] -rw------- 1 m m      627 Jul 19 04:57 xHOLDms2Cg3n7Olcko1bjSoqABFKDmABFKDm7AsVDm1ZNKDmfhjU4m.diag
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m    11905 Jul 19 04:57 runtime_log.err
[2023-07-19 04:57:11] -rw-rw-r-- 1 m m    22917 Jul 19 04:57 stderr.txt
[2023-07-19 04:57:11] HITS file was successfully produced:
[2023-07-19 04:57:11] -rw------- 1 m m 1808621 Jul 19 04:50 shared/HITS.pool.root.1
[2023-07-19 04:57:11]  *** Contents of shared directory: ***
[2023-07-19 04:57:11] total 41416
[2023-07-19 04:57:11] -rw-r--r-- 2 m m 37965264 Jul 19 04:33 ATLAS.root_0
[2023-07-19 04:57:11] -rw-r--r-- 2 m m    17604 Jul 19 04:33 start_atlas.sh
[2023-07-19 04:57:11] -rw-r--r-- 2 m m   428815 Jul 19 04:33 input.tar.gz
[2023-07-19 04:57:11] -rw------- 1 m m  1808621 Jul 19 04:50 HITS.pool.root.1
[2023-07-19 04:57:11] -rw------- 1 m m  2181120 Jul 19 04:57 result.tar.gz
04:57:12 (7770): run_atlas exited; CPU time 650.726913
04:57:12 (7770): called boinc_finish(0)

</stderr_txt>
]]>

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