Name | 1mKODm5rFh3n7Olcko1bjSoqABFKDmABFKDm7AsVDmVlNKDmm5LwTm_0 |
Workunit | 2319870 |
Created | 22 Jul 2023, 0:41:54 UTC |
Sent | 22 Jul 2023, 1:15:34 UTC |
Report deadline | 29 Jul 2023, 1:15:34 UTC |
Received | 22 Jul 2023, 1:43:29 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 1498 |
Run time | 25 min 31 sec |
CPU time | 11 min 46 sec |
Validate state | Valid |
Credit | 17.04 |
Device peak FLOPS | 13.02 GFLOPS |
Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.48 GB |
Peak swap size | 2.12 GB |
Peak disk usage | 84.02 MB |
<core_client_version>7.4.25</core_client_version> <![CDATA[ <stderr_txt> 02:16:48 (30804): wrapper (7.7.26015): starting 02:16:48 (30804): wrapper: running run_atlas (--nthreads 4) [2023-07-22 02:16:48] Arguments: --nthreads 4 [2023-07-22 02:16:48] Threads: 4 [2023-07-22 02:16:48] Checking for CVMFS [2023-07-22 02:16:48] Probing /cvmfs/atlas.cern.ch... OK [2023-07-22 02:16:48] Probing /cvmfs/atlas-condb.cern.ch... OK [2023-07-22 02:16:48] Running cvmfs_config stat atlas.cern.ch [2023-07-22 02:16:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2023-07-22 02:16:48] 2.9.0.0 5941 29 38220 121567 2 73 3570587 4194304 0 130560 0 96882 99.962 25450 530 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1 [2023-07-22 02:16:48] CVMFS is ok [2023-07-22 02:16:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2023-07-22 02:16:48] Checking for apptainer binary... [2023-07-22 02:16:48] Using apptainer found in PATH at /usr/bin/apptainer [2023-07-22 02:16:48] Running /usr/bin/apptainer --version [2023-07-22 02:16:48] apptainer version 1.0.3 [2023-07-22 02:16:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2023-07-22 02:16:48] TeeC16 [2023-07-22 02:16:48] apptainer works [2023-07-22 02:16:48] Set ATHENA_PROC_NUMBER=4 [2023-07-22 02:16:48] Set ATHENA_CORE_NUMBER=4 [2023-07-22 02:16:48] Starting ATLAS job with PandaID=5910340533 [2023-07-22 02:16:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2023-07-22 02:42:16] *** The last 200 lines of the pilot log: *** [2023-07-22 02:42:16] Setting up [4mcpuflags 0.1.0[0m ... [2023-07-22 02:42:16] >>>>>>>>>>>>>>>>>>>>>>>>> Information for user <<<<<<<<<<<<<<<<<<<<<<<<< [2023-07-22 02:42:16] ************************************************************************ [2023-07-22 02:42:16] x86-64-v2 [2023-07-22 02:42:16] 2023-07-22 01:41:55,238 | INFO | pilot.user.atlas.utilities | get_cpu_arch | CPU arch script returned: x86-64-v2 [2023-07-22 02:42:16] 2023-07-22 01:41:55,238 | DEBUG | pilot.control.job | get_data_structure | cpu arch=x86-64-v2 [2023-07-22 02:42:16] 2023-07-22 01:41:55,238 | INFO | pilot.user.atlas.utilities | get_memory_values | using path: /home/m/BOINC/slots/1/PanDA_Pilot-5910340533/memory_monitor_summary.json (trf name=prmon [2023-07-22 02:42:16] 2023-07-22 01:41:55,239 | DEBUG | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Avg': {'nprocs': 4.933, 'nthreads': 5.866, 'pss': 1257671.0, 'rchar': 68461401. [2023-07-22 02:42:16] 2023-07-22 01:41:55,239 | INFO | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json [2023-07-22 02:42:16] 2023-07-22 01:41:55,239 | INFO | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json [2023-07-22 02:42:16] 2023-07-22 01:41:55,239 | INFO | pilot.util.timing | timing_report | .............................. [2023-07-22 02:42:16] 2023-07-22 01:41:55,239 | INFO | pilot.util.timing | timing_report | . Timing measurements: [2023-07-22 02:42:16] 2023-07-22 01:41:55,239 | INFO | pilot.util.timing | timing_report | . get job = 55 s [2023-07-22 02:42:16] 2023-07-22 01:41:55,239 | INFO | pilot.util.timing | timing_report | . initial setup = 67 s [2023-07-22 02:42:16] 2023-07-22 01:41:55,239 | INFO | pilot.util.timing | timing_report | . payload setup = 9 s [2023-07-22 02:42:16] 2023-07-22 01:41:55,240 | INFO | pilot.util.timing | timing_report | . stage-in = 75 s [2023-07-22 02:42:16] 2023-07-22 01:41:55,240 | INFO | pilot.util.timing | timing_report | . payload execution = 897 s [2023-07-22 02:42:16] 2023-07-22 01:41:55,240 | INFO | pilot.util.timing | timing_report | . stage-out = 365 s [2023-07-22 02:42:16] 2023-07-22 01:41:55,240 | INFO | pilot.util.timing | timing_report | .............................. [2023-07-22 02:42:16] 2023-07-22 01:41:55,240 | DEBUG | pilot.control.job | send_state | data={'jobId': '5910340533', 'state': 'finished', 'timestamp': '2023-07-22T02:41:43+00:00', 'siteNam [2023-07-22 02:42:16] 2023-07-22 01:41:55,240 | DEBUG | pilot.control.job | write_heartbeat_to_file | heartbeat dictionary: {'jobId': '5910340533', 'state': 'finished', 'timestamp': '2023-07-22T02:41:43 [2023-07-22 02:42:16] 2023-07-22 01:41:55,240 | DEBUG | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file: /home/m/BOINC/slots/1/heartbeat.json [2023-07-22 02:42:16] 2023-07-22 01:41:55,241 | DEBUG | pilot.control.job | queue_monitor | job.completed=False [2023-07-22 02:42:16] 2023-07-22 01:41:55,300 | INFO | pilot.control.job | make_job_report | [2023-07-22 02:42:16] 2023-07-22 01:41:55,300 | INFO | pilot.control.job | make_job_report | job summary report [2023-07-22 02:42:16] 2023-07-22 01:41:55,300 | INFO | pilot.control.job | make_job_report | -------------------------------------------------- [2023-07-22 02:42:16] 2023-07-22 01:41:55,300 | INFO | pilot.control.job | make_job_report | PanDA job id: 5910340533 [2023-07-22 02:42:16] 2023-07-22 01:41:55,300 | INFO | pilot.control.job | make_job_report | task id: NULL [2023-07-22 02:42:16] 2023-07-22 01:41:55,300 | INFO | pilot.control.job | make_job_report | errors: (none) [2023-07-22 02:42:16] 2023-07-22 01:41:55,300 | INFO | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE [2023-07-22 02:42:16] 2023-07-22 01:41:55,300 | INFO | pilot.control.job | make_job_report | pilot state: finished [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | transexitcode: 0 [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | exeerrorcode: 0 [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | exeerrordiag: [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | exitcode: 0 [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | exitmsg: OK [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | cpuconsumptiontime: 720 s [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | nevents: 2 [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | neventsw: 0 [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | pid: 9973 [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | pgrp: 9973 [2023-07-22 02:42:16] 2023-07-22 01:41:55,301 | INFO | pilot.control.job | make_job_report | corecount: 4 [2023-07-22 02:42:16] 2023-07-22 01:41:55,302 | INFO | pilot.control.job | make_job_report | event service: False [2023-07-22 02:42:16] 2023-07-22 01:41:55,302 | INFO | pilot.control.job | make_job_report | sizes: {0: 2455961, 1: 2456160, 11: 2456306, 22: 2456334, 33: 2456362, 43: 2456390, 54: 2456546, 64: [2023-07-22 02:42:16] 2023-07-22 01:41:55,302 | INFO | pilot.control.job | make_job_report | -------------------------------------------------- [2023-07-22 02:42:16] 2023-07-22 01:41:55,302 | INFO | pilot.control.job | make_job_report | [2023-07-22 02:42:16] 2023-07-22 01:41:55,302 | DEBUG | pilot.control.job | has_job_completed | ls -lF /home/m/BOINC/slots/1: [2023-07-22 02:42:16] [2023-07-22 02:42:16] 2023-07-22 01:41:55,302 | INFO | pilot.util.container | print_executable | executing command: ls -lF /home/m/BOINC/slots/1 [2023-07-22 02:42:16] 2023-07-22 01:41:55,321 | DEBUG | pilot.control.job | has_job_completed | total 44832 [2023-07-22 02:42:16] -rw------- 1 m m 129 Jul 22 02:16 1mKODm5rFh3n7Olcko1bjSoqABFKDmABFKDm7AsVDmVlNKDmm5LwTm.diag [2023-07-22 02:42:16] -rw------- 1 m m 583142 Jul 22 02:41 9c446afa-7ae5-424e-811b-946a6ea47648_7635.1.job.log [2023-07-22 02:42:16] -rw------- 1 m m 179941 Jul 22 02:38 9c446afa-7ae5-424e-811b-946a6ea47648_7635.1.job.log.tgz [2023-07-22 02:42:16] -rw-r--r-- 2 m m 39611081 Jul 22 02:16 EVNT.04972714._000022.pool.root.1 [2023-07-22 02:42:16] drwxrwx--- 2 m m 4096 Jul 22 02:41 PanDA_Pilot-5910340533/ [2023-07-22 02:42:16] -rw------- 1 m m 1014900 Jul 22 02:18 agis_schedconf.cvmfs.json [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 0 Jul 22 02:16 boinc_lockfile [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 8192 Jul 22 02:41 boinc_mmap_file [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 533 Jul 22 02:35 boinc_task_state.xml [2023-07-22 02:42:16] -rw------- 1 m m 1370854 Jul 22 02:18 cric_ddmendpoints.json [2023-07-22 02:42:16] -rw------- 1 m m 7380 Jul 22 02:41 heartbeat.json [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 5728 Jul 22 02:16 init_data.xml [2023-07-22 02:42:16] -rw-r--r-- 2 m m 433056 Jul 22 02:16 input.tar.gz [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 112 Jul 22 02:16 job.xml [2023-07-22 02:42:16] -rw------- 1 m m 1017 Jul 22 02:35 memory_monitor_summary.json [2023-07-22 02:42:16] -rw------- 1 m m 1549094 Jul 22 02:35 output.1.9c446afa-7ae5-424e-811b-946a6ea47648_7635.pool.root [2023-07-22 02:42:16] -rw------- 1 m m 460 Jul 22 02:41 output.list [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 2663 Jul 22 02:16 pandaJob.out [2023-07-22 02:42:16] drwx------ 4 m m 4096 Jul 22 02:18 pilot3/ [2023-07-22 02:42:16] -rw------- 1 m m 421467 Jul 22 01:41 pilot3.tar.gz [2023-07-22 02:42:16] -rw------- 1 m m 569199 Jul 22 02:41 pilotlog.txt [2023-07-22 02:42:16] -rw-r--r-- 1 m m 4388 Jul 22 01:41 queuedata.json [2023-07-22 02:42:16] -rwxr-xr-x 1 m m 7986 Jul 22 02:16 run_atlas* [2023-07-22 02:42:16] -rwx------ 1 m m 27275 Jul 22 01:41 runpilot2-wrapper.sh* [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 407 Jul 22 02:16 runtime_log [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 7697 Jul 22 02:16 runtime_log.err [2023-07-22 02:42:16] -rw------- 1 m m 424 Jul 22 02:16 setup.sh.local [2023-07-22 02:42:16] drwxrwx--x 2 m m 4096 Jul 22 02:16 shared/ [2023-07-22 02:42:16] -rw-r--r-- 2 m m 17628 Jul 22 02:16 start_atlas.sh [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 1726 Jul 22 02:16 stderr.txt [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 107 Jul 22 02:16 wrapper_26015_x86_64-pc-linux-gnu [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 25 Jul 22 02:41 wrapper_checkpoint.txt [2023-07-22 02:42:16] 2023-07-22 01:41:55,322 | INFO | pilot.util.queuehandling | queue_report | queue jobs had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,322 | INFO | pilot.util.queuehandling | queue_report | queue payloads had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,322 | INFO | pilot.util.queuehandling | queue_report | queue data_in had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,322 | INFO | pilot.util.queuehandling | queue_report | queue data_out had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,322 | INFO | pilot.util.queuehandling | queue_report | queue current_data_in had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,322 | INFO | pilot.util.queuehandling | queue_report | queue validated_jobs had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,323 | INFO | pilot.util.queuehandling | queue_report | queue validated_payloads had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,323 | INFO | pilot.util.queuehandling | queue_report | queue monitored_payloads had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,323 | INFO | pilot.util.queuehandling | queue_report | queue finished_jobs had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,323 | INFO | pilot.util.queuehandling | queue_report | queue finished_payloads had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,323 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_in had 1 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,323 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_out had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,323 | INFO | pilot.util.queuehandling | queue_report | queue failed_jobs had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,323 | INFO | pilot.util.queuehandling | queue_report | queue failed_payloads had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,324 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_in had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,324 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_out had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,324 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobs had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,324 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s) [2023-07-22 02:42:16] 2023-07-22 01:41:55,324 | INFO | pilot.util.queuehandling | queue_report | queue realtimelog_payloads had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,324 | INFO | pilot.util.queuehandling | queue_report | queue messages had 0 job(s) [purged] [2023-07-22 02:42:16] 2023-07-22 01:41:55,324 | INFO | pilot.control.job | has_job_completed | job 5910340533 has completed (purged errors) [2023-07-22 02:42:16] 2023-07-22 01:41:55,324 | DEBUG | pilot.util.realtimelogger | cleanup | attempting real-time logger cleanup [2023-07-22 02:42:16] 2023-07-22 01:41:55,325 | INFO | pilot.util.processes | cleanup | overall cleanup function is called [2023-07-22 02:42:16] 2023-07-22 01:41:55,327 | DEBUG | pilot.util.processes | cleanup | work directory was removed: /home/m/BOINC/slots/1/PanDA_Pilot-5910340533 [2023-07-22 02:42:16] 2023-07-22 01:41:56,332 | INFO | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [9973] [2023-07-22 02:42:16] 2023-07-22 01:41:56,332 | INFO | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 9973 [2023-07-22 02:42:16] 2023-07-22 01:41:56,332 | INFO | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes [2023-07-22 02:42:16] 2023-07-22 01:41:57,337 | INFO | pilot.util.processes | cleanup | collected zombie processes [2023-07-22 02:42:16] 2023-07-22 01:41:57,338 | INFO | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=9973 [2023-07-22 02:42:16] 2023-07-22 01:41:57,381 | INFO | pilot.util.processes | kill_processes | process IDs to be killed: [9973] (in reverse order) [2023-07-22 02:42:16] 2023-07-22 01:41:57,419 | WARNING | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) [2023-07-22 02:42:16] 2023-07-22 01:41:57,419 | INFO | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs [2023-07-22 02:42:16] 2023-07-22 01:41:57,419 | DEBUG | pilot.util.queuehandling | purge_queue | queue purged [2023-07-22 02:42:16] 2023-07-22 01:41:57,419 | INFO | pilot.control.job | retrieve | ready for new job [2023-07-22 02:42:16] 2023-07-22 01:41:57,420 | INFO | root | retrieve | pilot has finished with previous job - re-establishing logging [2023-07-22 02:42:16] 2023-07-22 01:41:57,420 | INFO | pilot.util.auxiliary | pilot_version_banner | ************************************* [2023-07-22 02:42:16] 2023-07-22 01:41:57,420 | INFO | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 3.6.5.7 *** [2023-07-22 02:42:16] 2023-07-22 01:41:57,420 | INFO | pilot.util.auxiliary | pilot_version_banner | ************************************* [2023-07-22 02:42:16] 2023-07-22 01:41:57,420 | INFO | pilot.util.auxiliary | pilot_version_banner | [2023-07-22 02:42:16] 2023-07-22 01:41:57,444 | INFO | pilot.util.auxiliary | display_architecture_info | architecture information: [2023-07-22 02:42:16] 2023-07-22 01:41:57,445 | INFO | pilot.util.container | print_executable | executing command: cat /etc/os-release [2023-07-22 02:42:16] 2023-07-22 01:41:57,462 | INFO | pilot.util.filehandling | dump | cat /etc/os-release: [2023-07-22 02:42:16] NAME="CentOS Linux" [2023-07-22 02:42:16] VERSION="7 (Core)" [2023-07-22 02:42:16] ID="centos" [2023-07-22 02:42:16] ID_LIKE="rhel fedora" [2023-07-22 02:42:16] VERSION_ID="7" [2023-07-22 02:42:16] PRETTY_NAME="CentOS Linux 7 (Core)" [2023-07-22 02:42:16] ANSI_COLOR="0;31" [2023-07-22 02:42:16] CPE_NAME="cpe:/o:centos:centos:7" [2023-07-22 02:42:16] HOME_URL="https://www.centos.org/" [2023-07-22 02:42:16] BUG_REPORT_URL="https://bugs.centos.org/" [2023-07-22 02:42:16] [2023-07-22 02:42:16] CENTOS_MANTISBT_PROJECT="CentOS-7" [2023-07-22 02:42:16] CENTOS_MANTISBT_PROJECT_VERSION="7" [2023-07-22 02:42:16] REDHAT_SUPPORT_PRODUCT="centos" [2023-07-22 02:42:16] REDHAT_SUPPORT_PRODUCT_VERSION="7" [2023-07-22 02:42:16] [2023-07-22 02:42:16] 2023-07-22 01:41:57,463 | INFO | pilot.util.auxiliary | pilot_version_banner | ************************************* [2023-07-22 02:42:16] 2023-07-22 01:41:57,964 | DEBUG | pilot.util.monitoring | check_local_space | checking local space on /home/m/BOINC/slots/1 [2023-07-22 02:42:16] 2023-07-22 01:41:57,964 | INFO | pilot.util.container | print_executable | executing command: df -mP /home/m/BOINC/slots/1 [2023-07-22 02:42:16] 2023-07-22 01:41:57,983 | DEBUG | pilot.util.workernode | get_local_disk_space | stdout=Filesystem 1048576-blocks Used Available Capacity Mounted on [2023-07-22 02:42:16] /dev/sda1 455417 28454 403807 7% /home/m/BOINC/slots/1 [2023-07-22 02:42:16] 2023-07-22 01:41:57,984 | DEBUG | pilot.util.workernode | get_local_disk_space | stderr= [2023-07-22 02:42:16] 2023-07-22 01:41:57,984 | INFO | pilot.util.monitoring | check_local_space | sufficient remaining disk space (423422328832 B) [2023-07-22 02:42:16] 2023-07-22 01:41:57,984 | WARNING | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job [2023-07-22 02:42:16] 2023-07-22 01:41:57,984 | WARNING | pilot.control.job | retrieve | setting graceful_stop since proceed_with_getjob() returned False (pilot will end) [2023-07-22 02:42:16] 2023-07-22 01:41:58,063 | DEBUG | pilot.control.data | control | data control ending since graceful_stop has been set [2023-07-22 02:42:16] 2023-07-22 01:41:58,107 | WARNING | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration [2023-07-22 02:42:16] 2023-07-22 01:41:58,447 | DEBUG | pilot.control.job | control | job control ending since graceful_stop has been set [2023-07-22 02:42:16] 2023-07-22 01:41:58,479 | WARNING | pilot.control.job | check_for_abort_job | job monitor detected an abort_job request (signal=None) [2023-07-22 02:42:16] 2023-07-22 01:41:58,480 | WARNING | pilot.util.common | should_abort | job:job_monitor:received graceful stop - abort after this iteration [2023-07-22 02:42:16] 2023-07-22 01:41:58,480 | INFO | pilot.control.job | job_monitor | will abort loop [2023-07-22 02:42:16] 2023-07-22 01:41:58,548 | WARNING | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration [2023-07-22 02:42:16] 2023-07-22 01:41:58,609 | INFO | pilot.util.queuehandling | abort_jobs_in_queues | found 0 job(s) in 20 queues [2023-07-22 02:42:16] 2023-07-22 01:41:58,609 | WARNING | pilot.control.monitor | run_checks | pilot monitor received instruction that args.graceful_stop has been set [2023-07-22 02:42:16] 2023-07-22 01:41:58,609 | WARNING | pilot.control.monitor | run_checks | will wait for a maximum of 300 s for threads to finish [2023-07-22 02:42:16] 2023-07-22 01:41:58,990 | INFO | pilot.control.job | retrieve | [job] retrieve thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,069 | INFO | pilot.control.data | control | [data] control thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,241 | DEBUG | pilot.control.payload | control | payload control ending since graceful_stop has been set [2023-07-22 02:42:16] 2023-07-22 01:41:59,349 | INFO | pilot.control.job | validate | [job] validate thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,452 | INFO | pilot.control.job | control | [job] control thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,485 | INFO | pilot.control.job | job_monitor | [job] job monitor thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,510 | INFO | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,683 | INFO | pilot.control.data | copytool_in | [data] copytool_in thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,692 | INFO | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,704 | INFO | pilot.control.payload | validate_post | [payload] validate_post thread has finished [2023-07-22 02:42:16] 2023-07-22 01:41:59,766 | INFO | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished [2023-07-22 02:42:16] 2023-07-22 01:42:00,078 | INFO | pilot.control.payload | failed_post | [payload] failed_post thread has finished [2023-07-22 02:42:16] 2023-07-22 01:42:00,246 | INFO | pilot.control.payload | control | [payload] control thread has finished [2023-07-22 02:42:16] 2023-07-22 01:42:00,310 | WARNING | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration [2023-07-22 02:42:16] 2023-07-22 01:42:00,554 | INFO | pilot.control.data | copytool_out | [data] copytool_out thread has finished [2023-07-22 02:42:16] 2023-07-22 01:42:01,316 | INFO | pilot.control.job | queue_monitor | [job] queue monitor thread has finished [2023-07-22 02:42:16] 2023-07-22 01:42:02,112 | INFO | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished [2023-07-22 02:42:16] 2023-07-22 01:42:08,946 | INFO | pilot.control.payload | get_logging_info | job.realtimelogging is not enabled [2023-07-22 02:42:16] 2023-07-22 01:42:08,946 | DEBUG | pilot.control.payload | run_realtimelog | real-time logging not needed at this point [2023-07-22 02:42:16] 2023-07-22 01:42:08,946 | DEBUG | pilot.control.payload | run_realtimelog | realtime logger was not found, waiting .. [2023-07-22 02:42:16] 2023-07-22 01:42:09,952 | INFO | pilot.control.payload | run_realtimelog | [payload] run_realtimelog thread has finished [2023-07-22 02:42:16] 2023-07-22 01:42:11,629 | INFO | pilot.util.processes | threads_aborted | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370 [2023-07-22 02:42:16] 2023-07-22 01:42:11,630 | DEBUG | pilot.workflow.generic | run | will proceed to set job_aborted [2023-07-22 02:42:16] 2023-07-22 01:42:11,672 | WARNING | pilot.control.monitor | run_checks | job_aborted has been set - aborting pilot monitoring [2023-07-22 02:42:16] 2023-07-22 01:42:11,672 | INFO | pilot.control.monitor | control | [monitor] control thread has ended [2023-07-22 02:42:16] 2023-07-22 01:42:16,655 | DEBUG | pilot.workflow.generic | run | all relevant threads have aborted (thread count=1) [2023-07-22 02:42:16] 2023-07-22 01:42:16,655 | INFO | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) [2023-07-22 02:42:16] 2023-07-22 01:42:16,655 | DEBUG | root | <module> | trace=<class 'pilot.workflow.generic.traces'> [2023-07-22 02:42:16] 2023-07-22 01:42:16,656 | INFO | root | wrap_up | traces error code: 0 [2023-07-22 02:42:16] 2023-07-22 01:42:16,656 | INFO | root | wrap_up | pilot has finished (exit code=0, shell exit code=0) [2023-07-22 02:42:16] 2023-07-22 01:42:16,710 [wrapper] ==== pilot stdout END ==== [2023-07-22 02:42:16] 2023-07-22 01:42:16,716 [wrapper] ==== wrapper stdout RESUME ==== [2023-07-22 02:42:16] 2023-07-22 01:42:16,720 [wrapper] pilotpid: 1625 [2023-07-22 02:42:16] 2023-07-22 01:42:16,724 [wrapper] Pilot exit status: 0 [2023-07-22 02:42:16] 2023-07-22 01:42:16,734 [wrapper] pandaids: 5910340533 [2023-07-22 02:42:16] 2023-07-22 01:42:16,741 [wrapper] apfmon messages muted [2023-07-22 02:42:16] 2023-07-22 01:42:16,744 [wrapper] Test setup, not cleaning [2023-07-22 02:42:16] 2023-07-22 01:42:16,747 [wrapper] ==== wrapper stdout END ==== [2023-07-22 02:42:16] 2023-07-22 01:42:16,751 [wrapper] ==== wrapper stderr END ==== [2023-07-22 02:42:16] 2023-07-22 01:42:16,760 [wrapper] wrapperexiting ec=0, duration=1528 [2023-07-22 02:42:16] 2023-07-22 01:42:16,764 [wrapper] apfmon messages muted [2023-07-22 02:42:16] *** Error codes and diagnostics *** [2023-07-22 02:42:16] "exeErrorCode": 0, [2023-07-22 02:42:16] "exeErrorDiag": "", [2023-07-22 02:42:16] "pilotErrorCode": 0, [2023-07-22 02:42:16] "pilotErrorDiag": "", [2023-07-22 02:42:16] *** Listing of results directory *** [2023-07-22 02:42:16] total 46620 [2023-07-22 02:42:16] -rwx------ 1 m m 27275 Jul 22 01:41 runpilot2-wrapper.sh [2023-07-22 02:42:16] -rw-r--r-- 1 m m 4388 Jul 22 01:41 queuedata.json [2023-07-22 02:42:16] -rw------- 1 m m 421467 Jul 22 01:41 pilot3.tar.gz [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 107 Jul 22 02:16 wrapper_26015_x86_64-pc-linux-gnu [2023-07-22 02:42:16] -rwxr-xr-x 1 m m 7986 Jul 22 02:16 run_atlas [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 112 Jul 22 02:16 job.xml [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 5728 Jul 22 02:16 init_data.xml [2023-07-22 02:42:16] -rw-r--r-- 2 m m 39611081 Jul 22 02:16 EVNT.04972714._000022.pool.root.1 [2023-07-22 02:42:16] -rw-r--r-- 2 m m 17628 Jul 22 02:16 start_atlas.sh [2023-07-22 02:42:16] drwxrwx--x 2 m m 4096 Jul 22 02:16 shared [2023-07-22 02:42:16] -rw-r--r-- 2 m m 433056 Jul 22 02:16 input.tar.gz [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 0 Jul 22 02:16 boinc_lockfile [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 2663 Jul 22 02:16 pandaJob.out [2023-07-22 02:42:16] -rw------- 1 m m 424 Jul 22 02:16 setup.sh.local [2023-07-22 02:42:16] -rw------- 1 m m 1370854 Jul 22 02:18 cric_ddmendpoints.json [2023-07-22 02:42:16] -rw------- 1 m m 1014900 Jul 22 02:18 agis_schedconf.cvmfs.json [2023-07-22 02:42:16] drwx------ 4 m m 4096 Jul 22 02:18 pilot3 [2023-07-22 02:42:16] -rw------- 1 m m 1549094 Jul 22 02:35 output.1.9c446afa-7ae5-424e-811b-946a6ea47648_7635.pool.root [2023-07-22 02:42:16] -rw------- 1 m m 1017 Jul 22 02:35 memory_monitor_summary.json [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 533 Jul 22 02:35 boinc_task_state.xml [2023-07-22 02:42:16] -rw------- 1 m m 179941 Jul 22 02:38 9c446afa-7ae5-424e-811b-946a6ea47648_7635.1.job.log.tgz [2023-07-22 02:42:16] -rw------- 1 m m 7380 Jul 22 02:41 heartbeat.json [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 25 Jul 22 02:42 wrapper_checkpoint.txt [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 8192 Jul 22 02:42 boinc_mmap_file [2023-07-22 02:42:16] -rw------- 1 m m 8515 Jul 22 02:42 pilotlog.txt [2023-07-22 02:42:16] -rw------- 1 m m 599380 Jul 22 02:42 9c446afa-7ae5-424e-811b-946a6ea47648_7635.1.job.log [2023-07-22 02:42:16] -rw------- 1 m m 460 Jul 22 02:42 output.list [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 744 Jul 22 02:42 runtime_log [2023-07-22 02:42:16] -rw------- 1 m m 2344960 Jul 22 02:42 result.tar.gz [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 11879 Jul 22 02:42 runtime_log.err [2023-07-22 02:42:16] -rw------- 1 m m 626 Jul 22 02:42 1mKODm5rFh3n7Olcko1bjSoqABFKDmABFKDm7AsVDmVlNKDmm5LwTm.diag [2023-07-22 02:42:16] -rw-rw-r-- 1 m m 28699 Jul 22 02:42 stderr.txt [2023-07-22 02:42:16] HITS file was successfully produced: [2023-07-22 02:42:16] -rw------- 1 m m 1549094 Jul 22 02:35 shared/HITS.pool.root.1 [2023-07-22 02:42:16] *** Contents of shared directory: *** [2023-07-22 02:42:16] total 42936 [2023-07-22 02:42:16] -rw-r--r-- 2 m m 39611081 Jul 22 02:16 ATLAS.root_0 [2023-07-22 02:42:16] -rw-r--r-- 2 m m 17628 Jul 22 02:16 start_atlas.sh [2023-07-22 02:42:16] -rw-r--r-- 2 m m 433056 Jul 22 02:16 input.tar.gz [2023-07-22 02:42:16] -rw------- 1 m m 1549094 Jul 22 02:35 HITS.pool.root.1 [2023-07-22 02:42:16] -rw------- 1 m m 2344960 Jul 22 02:42 result.tar.gz 02:42:18 (30804): run_atlas exited; CPU time 706.396464 02:42:18 (30804): called boinc_finish(0) </stderr_txt> ]]>
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