Name 4AfKDmgTHh3n7Olcko1bjSoqABFKDmABFKDm7AsVDmolNKDmlyw1To_0
Workunit 2319889
Created 22 Jul 2023, 2:24:47 UTC
Sent 22 Jul 2023, 2:36:25 UTC
Report deadline 29 Jul 2023, 2:36:25 UTC
Received 22 Jul 2023, 3:03:37 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1498
Run time 25 min 4 sec
CPU time 11 min 38 sec
Validate state Valid
Credit 16.92
Device peak FLOPS 13.02 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.51 GB
Peak swap size 2.12 GB
Peak disk usage 79.74 MB

Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
03:37:31 (8227): wrapper (7.7.26015): starting
03:37:31 (8227): wrapper: running run_atlas (--nthreads 4)
[2023-07-22 03:37:31] Arguments: --nthreads 4
[2023-07-22 03:37:31] Threads: 4
[2023-07-22 03:37:31] Checking for CVMFS
[2023-07-22 03:37:31] Probing /cvmfs/atlas.cern.ch... OK
[2023-07-22 03:37:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-07-22 03:37:31] Running cvmfs_config stat atlas.cern.ch
[2023-07-22 03:37:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-07-22 03:37:31] 2.9.0.0 5941 109 46556 121568 2 84 3613523 4194305 0 130560 0 383940 99.984 26500 461 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-07-22 03:37:31] CVMFS is ok
[2023-07-22 03:37:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-07-22 03:37:31] Checking for apptainer binary...
[2023-07-22 03:37:31] Using apptainer found in PATH at /usr/bin/apptainer
[2023-07-22 03:37:31] Running /usr/bin/apptainer --version
[2023-07-22 03:37:31] apptainer version 1.0.3
[2023-07-22 03:37:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-07-22 03:37:31] TeeC16
[2023-07-22 03:37:31] apptainer works
[2023-07-22 03:37:31] Set ATHENA_PROC_NUMBER=4
[2023-07-22 03:37:31] Set ATHENA_CORE_NUMBER=4
[2023-07-22 03:37:31] Starting ATLAS job with PandaID=5910417919
[2023-07-22 03:37:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-07-22 04:02:32]  *** The last 200 lines of the pilot log: ***
[2023-07-22 04:02:32] 2023-07-22 03:01:38,835 | INFO     | number of running child processes to parent process 18838: 1
[2023-07-22 04:02:32] 2023-07-22 03:01:38,835 | INFO     | maximum number of monitored processes: 5
[2023-07-22 04:02:32] 2023-07-22 03:01:39,037 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-07-22 04:02:32] 2023-07-22 03:01:39,178 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-07-22 04:02:32] 2023-07-22 03:01:39,178 | INFO     | will try again after 19s..
[2023-07-22 04:02:32] 2023-07-22 03:01:41,338 | INFO     | monitor loop #204: job 0:5910417919 is in state 'stageout'
[2023-07-22 04:02:32] 2023-07-22 03:01:41,378 | INFO     | number of running child processes to parent process 18838: 1
[2023-07-22 04:02:32] 2023-07-22 03:01:41,378 | INFO     | maximum number of monitored processes: 5
[2023-07-22 04:02:32] 2023-07-22 03:01:43,879 | INFO     | monitor loop #205: job 0:5910417919 is in state 'stageout'
[2023-07-22 04:02:32] 2023-07-22 03:01:43,926 | INFO     | number of running child processes to parent process 18838: 1
[2023-07-22 04:02:32] 2023-07-22 03:01:43,926 | INFO     | maximum number of monitored processes: 5
[2023-07-22 04:02:32] 2023-07-22 03:01:46,429 | INFO     | monitor loop #206: job 0:5910417919 is in state 'stageout'
[2023-07-22 04:02:32] 2023-07-22 03:01:46,475 | INFO     | number of running child processes to parent process 18838: 1
[2023-07-22 04:02:32] 2023-07-22 03:01:46,475 | INFO     | maximum number of monitored processes: 5
[2023-07-22 04:02:32] 2023-07-22 03:01:48,978 | INFO     | monitor loop #207: job 0:5910417919 is in state 'stageout'
[2023-07-22 04:02:32] 2023-07-22 03:01:49,023 | INFO     | number of running child processes to parent process 18838: 1
[2023-07-22 04:02:32] 2023-07-22 03:01:49,023 | INFO     | maximum number of monitored processes: 5
[2023-07-22 04:02:32] 2023-07-22 03:01:51,526 | INFO     | monitor loop #208: job 0:5910417919 is in state 'stageout'
[2023-07-22 04:02:32] 2023-07-22 03:01:51,561 | INFO     | number of running child processes to parent process 18838: 1
[2023-07-22 04:02:32] 2023-07-22 03:01:51,561 | INFO     | maximum number of monitored processes: 5
[2023-07-22 04:02:32] 2023-07-22 03:01:54,064 | INFO     | monitor loop #209: job 0:5910417919 is in state 'stageout'
[2023-07-22 04:02:32] 2023-07-22 03:01:54,108 | INFO     | number of running child processes to parent process 18838: 1
[2023-07-22 04:02:32] 2023-07-22 03:01:54,108 | INFO     | maximum number of monitored processes: 5
[2023-07-22 04:02:32] 2023-07-22 03:01:56,611 | INFO     | monitor loop #210: job 0:5910417919 is in state 'stageout'
[2023-07-22 04:02:32] 2023-07-22 03:01:56,654 | INFO     | number of running child processes to parent process 18838: 1
[2023-07-22 04:02:32] 2023-07-22 03:01:56,654 | INFO     | maximum number of monitored processes: 5
[2023-07-22 04:02:32] 2023-07-22 03:01:58,241 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-07-22 04:02:32] 2023-07-22 03:01:58,378 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-07-22 04:02:32] 2023-07-22 03:01:58,378 | WARNING  | cache file=/home/m/BOINC/slots/1/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/1/agis_ddmendpoints.ag
[2023-07-22 04:02:32] 2023-07-22 03:01:58,424 | INFO     | transferring file e454eba7-aa21-471d-82c1-e39aca0a9bc2_64398.1.job.log.tgz from /home/m/BOINC/slots/1/PanDA_Pilot-5910417919/e454eba7-aa21-471d-82c1-e39aca0a9bc2_6
[2023-07-22 04:02:32] 2023-07-22 03:01:58,424 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/1/PanDA_Pilot-5910417919/e454eba7-aa21-471d-82c1-e39aca0a9bc2_64398.1.job.log.tgz /home/m/BOINC/slots/1/e454
[2023-07-22 04:02:32] 2023-07-22 03:01:58,443 | INFO     | Adding to output.list: e454eba7-aa21-471d-82c1-e39aca0a9bc2_64398.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/fd/b8/e454eba7-aa21-
[2023-07-22 04:02:32] 2023-07-22 03:01:58,444 | INFO     | summary of transferred files:
[2023-07-22 04:02:32] 2023-07-22 03:01:58,444 | INFO     |  -- lfn=e454eba7-aa21-471d-82c1-e39aca0a9bc2_64398.1.job.log.tgz, status_code=0, status=transferred
[2023-07-22 04:02:32] 2023-07-22 03:01:58,444 | INFO     | stage-out finished correctly
[2023-07-22 04:02:32] 2023-07-22 03:01:59,156 | INFO     | monitor loop #211: job 0:5910417919 is in state 'finished'
[2023-07-22 04:02:32] 2023-07-22 03:01:59,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-22 04:02:32] 2023-07-22 03:02:01,611 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-07-22 04:02:32] 2023-07-22 03:02:01,663 | INFO     | monitor loop #212: job 0:5910417919 is in state 'finished'
[2023-07-22 04:02:32] 2023-07-22 03:02:01,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-22 04:02:32] 2023-07-22 03:02:03,864 | INFO     | job 5910417919 has state=finished
[2023-07-22 04:02:32] 2023-07-22 03:02:03,864 | INFO     | preparing for final server update for job 5910417919 in state='finished'
[2023-07-22 04:02:32] 2023-07-22 03:02:03,864 | INFO     | this job has now completed (state=finished)
[2023-07-22 04:02:32] 2023-07-22 03:02:03,865 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-07-22 04:02:32] 2023-07-22 03:02:03,865 | INFO     | job 5910417919 has finished - writing final server update
[2023-07-22 04:02:32] 2023-07-22 03:02:03,865 | INFO     | fitting pss+swap vs Time
[2023-07-22 04:02:32] 2023-07-22 03:02:03,866 | INFO     | current memory leak: 86.52 B/s (using 8 data points, chi2=0.00)
[2023-07-22 04:02:32] 2023-07-22 03:02:03,866 | INFO     | total number of processed events: 2 (read)
[2023-07-22 04:02:32] 2023-07-22 03:02:03,884 | INFO     | executing command: lscpu
[2023-07-22 04:02:32] 2023-07-22 03:02:03,899 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-07-22 04:02:32] 2023-07-22 03:02:03,899 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-07-22 04:02:32] 2023-07-22 03:02:03,923 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-07-22 04:02:32] 2023-07-22 03:02:04,166 | INFO     | monitor loop #213: job 0:5910417919 is in state 'finished'
[2023-07-22 04:02:32] 2023-07-22 03:02:04,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-22 04:02:32] 2023-07-22 03:02:06,669 | INFO     | monitor loop #214: job 0:5910417919 is in state 'finished'
[2023-07-22 04:02:32] 2023-07-22 03:02:06,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-22 04:02:32] 2023-07-22 03:02:09,172 | INFO     | monitor loop #215: job 0:5910417919 is in state 'finished'
[2023-07-22 04:02:32] 2023-07-22 03:02:09,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-22 04:02:32] 2023-07-22 03:02:11,676 | INFO     | monitor loop #216: job 0:5910417919 is in state 'finished'
[2023-07-22 04:02:32] 2023-07-22 03:02:11,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-22 04:02:32] 2023-07-22 03:02:12,098 | INFO     | CPU arch script returned: x86-64-v2
[2023-07-22 04:02:32] 2023-07-22 03:02:12,099 | INFO     | using path: /home/m/BOINC/slots/1/PanDA_Pilot-5910417919/memory_monitor_summary.json (trf name=prmon)
[2023-07-22 04:02:32] 2023-07-22 03:02:12,099 | INFO     | extracted standard info from prmon json
[2023-07-22 04:02:32] 2023-07-22 03:02:12,099 | INFO     | extracted standard memory fields from prmon json
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | ..............................
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | . Timing measurements:
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | . get job = 71 s
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | . initial setup = 57 s
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | . payload setup = 7 s
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | . stage-in = 89 s
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | . payload execution = 862 s
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | . stage-out = 359 s
[2023-07-22 04:02:32] 2023-07-22 03:02:12,100 | INFO     | ..............................
[2023-07-22 04:02:32] 2023-07-22 03:02:12,651 | INFO     | 
[2023-07-22 04:02:32] 2023-07-22 03:02:12,651 | INFO     | job summary report
[2023-07-22 04:02:32] 2023-07-22 03:02:12,651 | INFO     | --------------------------------------------------
[2023-07-22 04:02:32] 2023-07-22 03:02:12,651 | INFO     | PanDA job id: 5910417919
[2023-07-22 04:02:32] 2023-07-22 03:02:12,651 | INFO     | task id: NULL
[2023-07-22 04:02:32] 2023-07-22 03:02:12,651 | INFO     | errors: (none)
[2023-07-22 04:02:32] 2023-07-22 03:02:12,651 | INFO     | status: LOG_TRANSFER = DONE 
[2023-07-22 04:02:32] 2023-07-22 03:02:12,651 | INFO     | pilot state: finished 
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | transexitcode: 0
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | exeerrorcode: 0
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | exeerrordiag: 
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | exitcode: 0
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | exitmsg: OK
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | cpuconsumptiontime: 712 s
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | nevents: 2
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | neventsw: 0
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | pid: 18838
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | pgrp: 18838
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | corecount: 4
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | event service: False
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | sizes: {0: 2454816, 1: 2456351, 12: 2456497, 22: 2456525, 33: 2456553, 44: 2456581, 54: 2456737, 65: 2456765, 75: 2456793, 86: 2456821, 95: 2456909, 97: 2457217, 8
[2023-07-22 04:02:32] 2023-07-22 03:02:12,652 | INFO     | --------------------------------------------------
[2023-07-22 04:02:32] 2023-07-22 03:02:12,653 | INFO     | 
[2023-07-22 04:02:32] 2023-07-22 03:02:12,653 | INFO     | executing command: ls -lF /home/m/BOINC/slots/1
[2023-07-22 04:02:32] 2023-07-22 03:02:12,667 | INFO     | queue jobs had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,667 | INFO     | queue payloads had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,668 | INFO     | queue data_in had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,668 | INFO     | queue data_out had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,668 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,668 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,668 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,668 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,668 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,668 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue completed_jobids has 1 job(s)
[2023-07-22 04:02:32] 2023-07-22 03:02:12,669 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,670 | INFO     | queue messages had 0 job(s) [purged]
[2023-07-22 04:02:32] 2023-07-22 03:02:12,670 | INFO     | job 5910417919 has completed (purged errors)
[2023-07-22 04:02:32] 2023-07-22 03:02:12,670 | INFO     | overall cleanup function is called
[2023-07-22 04:02:32] 2023-07-22 03:02:13,677 | INFO     | --- collectZombieJob: --- 10, [18838]
[2023-07-22 04:02:32] 2023-07-22 03:02:13,677 | INFO     | zombie collector trying to kill pid 18838
[2023-07-22 04:02:32] 2023-07-22 03:02:13,677 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-07-22 04:02:32] 2023-07-22 03:02:14,682 | INFO     | collected zombie processes
[2023-07-22 04:02:32] 2023-07-22 03:02:14,682 | INFO     | will now attempt to kill all subprocesses of pid=18838
[2023-07-22 04:02:32] 2023-07-22 03:02:14,719 | INFO     | process IDs to be killed: [18838] (in reverse order)
[2023-07-22 04:02:32] 2023-07-22 03:02:14,752 | WARNING  | found no corresponding commands to process id(s)
[2023-07-22 04:02:32] 2023-07-22 03:02:14,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-07-22 04:02:32] 2023-07-22 03:02:14,753 | INFO     | ready for new job
[2023-07-22 04:02:32] 2023-07-22 03:02:14,753 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-07-22 04:02:32] 2023-07-22 03:02:14,754 | INFO     | *************************************
[2023-07-22 04:02:32] 2023-07-22 03:02:14,754 | INFO     | ***  PanDA Pilot version 3.6.4.7  ***
[2023-07-22 04:02:32] 2023-07-22 03:02:14,754 | INFO     | *************************************
[2023-07-22 04:02:32] 2023-07-22 03:02:14,754 | INFO     | 
[2023-07-22 04:02:32] 2023-07-22 03:02:14,772 | INFO     | architecture information:
[2023-07-22 04:02:32] 2023-07-22 03:02:14,772 | INFO     | executing command: cat /etc/os-release
[2023-07-22 04:02:32] 2023-07-22 03:02:14,786 | INFO     | cat /etc/os-release:
[2023-07-22 04:02:32] NAME="CentOS Linux"
[2023-07-22 04:02:32] VERSION="7 (Core)"
[2023-07-22 04:02:32] ID="centos"
[2023-07-22 04:02:32] ID_LIKE="rhel fedora"
[2023-07-22 04:02:32] VERSION_ID="7"
[2023-07-22 04:02:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-07-22 04:02:32] ANSI_COLOR="0;31"
[2023-07-22 04:02:32] CPE_NAME="cpe:/o:centos:centos:7"
[2023-07-22 04:02:32] HOME_URL="https://www.centos.org/"
[2023-07-22 04:02:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-07-22 04:02:32] 
[2023-07-22 04:02:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-07-22 04:02:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-07-22 04:02:32] REDHAT_SUPPORT_PRODUCT="centos"
[2023-07-22 04:02:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-07-22 04:02:32] 
[2023-07-22 04:02:32] 2023-07-22 03:02:14,786 | INFO     | *************************************
[2023-07-22 04:02:32] 2023-07-22 03:02:15,289 | INFO     | executing command: df -mP /home/m/BOINC/slots/1
[2023-07-22 04:02:32] 2023-07-22 03:02:15,301 | INFO     | sufficient remaining disk space (423379337216 B)
[2023-07-22 04:02:32] 2023-07-22 03:02:15,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-07-22 04:02:32] 2023-07-22 03:02:15,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-07-22 04:02:32] 2023-07-22 03:02:15,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-07-22 04:02:32] 2023-07-22 03:02:15,302 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-07-22 04:02:32] 2023-07-22 03:02:15,302 | INFO     | aborting loop
[2023-07-22 04:02:32] 2023-07-22 03:02:15,302 | INFO     | found 0 job(s) in 20 queues
[2023-07-22 04:02:32] 2023-07-22 03:02:15,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-07-22 04:02:32] 2023-07-22 03:02:15,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-07-22 04:02:32] 2023-07-22 03:02:16,303 | INFO     | [job] job monitor thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:16,304 | INFO     | [job] retrieve thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:16,421 | INFO     | [data] copytool_in thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:16,528 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-07-22 04:02:32] 2023-07-22 03:02:16,585 | INFO     | [data] control thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:16,634 | INFO     | [payload] validate_post thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:16,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-07-22 04:02:32] 2023-07-22 03:02:16,838 | INFO     | [payload] control thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:16,947 | INFO     | [payload] failed_post thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:16,996 | INFO     | [payload] execute_payloads thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:17,064 | INFO     | [job] validate thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:17,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-07-22 04:02:32] 2023-07-22 03:02:17,249 | INFO     | [job] create_data_payload thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:17,249 | INFO     | [job] control thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:17,428 | INFO     | [payload] validate_pre thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:18,176 | INFO     | [job] queue monitor thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:18,534 | INFO     | [data] copytool_out thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:20,684 | INFO     | [data] queue_monitor thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:25,851 | INFO     | job.realtimelogging is not enabled
[2023-07-22 04:02:32] 2023-07-22 03:02:26,856 | INFO     | [payload] run_realtimelog thread has finished
[2023-07-22 04:02:32] 2023-07-22 03:02:27,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140246852106048)>', '<ExcThread(monitor, started 140246410831616)>']
[2023-07-22 04:02:32] 2023-07-22 03:02:28,366 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-07-22 04:02:32] 2023-07-22 03:02:28,366 | INFO     | [monitor] control thread has ended
[2023-07-22 04:02:32] 2023-07-22 03:02:32,568 | INFO     | end of generic workflow (traces error code: 0)
[2023-07-22 04:02:32] 2023-07-22 03:02:32,568 | INFO     | traces error code: 0
[2023-07-22 04:02:32] 2023-07-22 03:02:32,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-07-22 04:02:32] 2023-07-22 03:02:32,618 [wrapper] ==== pilot stdout END ====
[2023-07-22 04:02:32] 2023-07-22 03:02:32,622 [wrapper] ==== wrapper stdout RESUME ====
[2023-07-22 04:02:32] 2023-07-22 03:02:32,625 [wrapper] pilotpid: 11372
[2023-07-22 04:02:32] 2023-07-22 03:02:32,628 [wrapper] Pilot exit status: 0
[2023-07-22 04:02:32] 2023-07-22 03:02:32,642 [wrapper] pandaids: 5910417919
[2023-07-22 04:02:32] 2023-07-22 03:02:32,648 [wrapper] apfmon messages muted
[2023-07-22 04:02:32] 2023-07-22 03:02:32,654 [wrapper] Test setup, not cleaning
[2023-07-22 04:02:32] 2023-07-22 03:02:32,658 [wrapper] ==== wrapper stdout END ====
[2023-07-22 04:02:32] 2023-07-22 03:02:32,661 [wrapper] ==== wrapper stderr END ====
[2023-07-22 04:02:32] 2023-07-22 03:02:32,668 [wrapper] wrapperexiting ec=0, duration=1501
[2023-07-22 04:02:32] 2023-07-22 03:02:32,671 [wrapper] apfmon messages muted
[2023-07-22 04:02:32]  *** Error codes and diagnostics ***
[2023-07-22 04:02:32]     "exeErrorCode": 0,
[2023-07-22 04:02:32]     "exeErrorDiag": "",
[2023-07-22 04:02:32]     "pilotErrorCode": 0,
[2023-07-22 04:02:32]     "pilotErrorDiag": "",
[2023-07-22 04:02:32]  *** Listing of results directory ***
[2023-07-22 04:02:32] total 44448
[2023-07-22 04:02:32] -rw-r--r-- 1 m m   418016 Jul 22 02:32 pilot3.tar.gz
[2023-07-22 04:02:32] -rw-r--r-- 1 m m     4388 Jul 22 03:21 queuedata.json
[2023-07-22 04:02:32] -rwx------ 1 m m    27277 Jul 22 03:24 runpilot2-wrapper.sh
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m      107 Jul 22 03:37 wrapper_26015_x86_64-pc-linux-gnu
[2023-07-22 04:02:32] -rwxr-xr-x 1 m m     7986 Jul 22 03:37 run_atlas
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m      112 Jul 22 03:37 job.xml
[2023-07-22 04:02:32] -rw-r--r-- 2 m m    17604 Jul 22 03:37 start_atlas.sh
[2023-07-22 04:02:32] drwxrwx--x 2 m m     4096 Jul 22 03:37 shared
[2023-07-22 04:02:32] -rw-r--r-- 2 m m   428862 Jul 22 03:37 input.tar.gz
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m     5728 Jul 22 03:37 init_data.xml
[2023-07-22 04:02:32] -rw-r--r-- 2 m m 37620382 Jul 22 03:37 EVNT.04972714._000038.pool.root.1
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m        0 Jul 22 03:37 boinc_lockfile
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m     2752 Jul 22 03:37 pandaJob.out
[2023-07-22 04:02:32] -rw------- 1 m m      424 Jul 22 03:37 setup.sh.local
[2023-07-22 04:02:32] -rw------- 1 m m  1014892 Jul 22 03:37 agis_schedconf.cvmfs.json
[2023-07-22 04:02:32] -rw------- 1 m m  1370854 Jul 22 03:38 cric_ddmendpoints.json
[2023-07-22 04:02:32] drwx------ 4 m m     4096 Jul 22 03:39 pilot3
[2023-07-22 04:02:32] -rw------- 1 m m  1859032 Jul 22 03:55 output.1.e454eba7-aa21-471d-82c1-e39aca0a9bc2_64398.pool.root
[2023-07-22 04:02:32] -rw------- 1 m m     1017 Jul 22 03:55 memory_monitor_summary.json
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m      533 Jul 22 03:56 boinc_task_state.xml
[2023-07-22 04:02:32] -rw------- 1 m m   162435 Jul 22 03:59 e454eba7-aa21-471d-82c1-e39aca0a9bc2_64398.1.job.log.tgz
[2023-07-22 04:02:32] -rw------- 1 m m     7399 Jul 22 04:02 heartbeat.json
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m       25 Jul 22 04:02 wrapper_checkpoint.txt
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m     8192 Jul 22 04:02 boinc_mmap_file
[2023-07-22 04:02:32] -rw------- 1 m m     4092 Jul 22 04:02 pilotlog.txt
[2023-07-22 04:02:32] -rw------- 1 m m   200669 Jul 22 04:02 e454eba7-aa21-471d-82c1-e39aca0a9bc2_64398.1.job.log
[2023-07-22 04:02:32] -rw------- 1 m m      464 Jul 22 04:02 output.list
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m      748 Jul 22 04:02 runtime_log
[2023-07-22 04:02:32] -rw------- 1 m m  2242560 Jul 22 04:02 result.tar.gz
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m    11905 Jul 22 04:02 runtime_log.err
[2023-07-22 04:02:32] -rw------- 1 m m      627 Jul 22 04:02 4AfKDmgTHh3n7Olcko1bjSoqABFKDmABFKDm7AsVDmolNKDmlyw1To.diag
[2023-07-22 04:02:32] -rw-rw-r-- 1 m m    22660 Jul 22 04:02 stderr.txt
[2023-07-22 04:02:32] HITS file was successfully produced:
[2023-07-22 04:02:32] -rw------- 1 m m 1859032 Jul 22 03:55 shared/HITS.pool.root.1
[2023-07-22 04:02:32]  *** Contents of shared directory: ***
[2023-07-22 04:02:32] total 41188
[2023-07-22 04:02:32] -rw-r--r-- 2 m m    17604 Jul 22 03:37 start_atlas.sh
[2023-07-22 04:02:32] -rw-r--r-- 2 m m   428862 Jul 22 03:37 input.tar.gz
[2023-07-22 04:02:32] -rw-r--r-- 2 m m 37620382 Jul 22 03:37 ATLAS.root_0
[2023-07-22 04:02:32] -rw------- 1 m m  1859032 Jul 22 03:55 HITS.pool.root.1
[2023-07-22 04:02:32] -rw------- 1 m m  2242560 Jul 22 04:02 result.tar.gz
04:02:34 (8227): run_atlas exited; CPU time 698.134188
04:02:34 (8227): called boinc_finish(0)

</stderr_txt>
]]>


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