Name ugsNDmCanj3n7Olcko1bjSoqABFKDmABFKDm7AsVDmBCOKDmkYZlwm_0
Workunit 2321446
Created 29 Jul 2023, 1:05:56 UTC
Sent 29 Jul 2023, 1:18:02 UTC
Report deadline 5 Aug 2023, 1:18:02 UTC
Received 29 Jul 2023, 1:45:36 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1498
Run time 25 min 8 sec
CPU time 11 min 0 sec
Validate state Valid
Credit 16.52
Device peak FLOPS 13.05 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.51 GB
Peak swap size 2.12 GB
Peak disk usage 82.45 MB

Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:19:13 (1209): wrapper (7.7.26015): starting
02:19:13 (1209): wrapper: running run_atlas (--nthreads 4)
[2023-07-29 02:19:13] Arguments: --nthreads 4
[2023-07-29 02:19:13] Threads: 4
[2023-07-29 02:19:13] Checking for CVMFS
[2023-07-29 02:19:16] Probing /cvmfs/atlas.cern.ch... OK
[2023-07-29 02:19:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-07-29 02:19:16] Running cvmfs_config stat atlas.cern.ch
[2023-07-29 02:19:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-07-29 02:19:25] 2.9.0.0 1361 0 24700 121840 3 1 3975807 4194304 0 130560 0 0 0.000 829 340 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-07-29 02:19:25] CVMFS is ok
[2023-07-29 02:19:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-07-29 02:19:25] Checking for apptainer binary...
[2023-07-29 02:19:25] Using apptainer found in PATH at /usr/bin/apptainer
[2023-07-29 02:19:25] Running /usr/bin/apptainer --version
[2023-07-29 02:19:26] apptainer version 1.0.3
[2023-07-29 02:19:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-07-29 02:19:26] TeeC16
[2023-07-29 02:19:26] apptainer works
[2023-07-29 02:19:26] Set ATHENA_PROC_NUMBER=4
[2023-07-29 02:19:26] Set ATHENA_CORE_NUMBER=4
[2023-07-29 02:19:26] Starting ATLAS job with PandaID=5916383857
[2023-07-29 02:19:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-07-29 02:44:19]  *** The last 200 lines of the pilot log: ***
[2023-07-29 02:44:19] 2023-07-29 01:43:21,987 | INFO     | monitor loop #219: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:22,032 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:22,032 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:24,535 | INFO     | monitor loop #220: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:24,583 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:24,584 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:27,087 | INFO     | monitor loop #221: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:27,125 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:27,125 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:29,628 | INFO     | monitor loop #222: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:29,669 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:29,670 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:30,836 | INFO     | 1436s have passed since pilot start
[2023-07-29 02:44:19] 2023-07-29 01:43:32,173 | INFO     | monitor loop #223: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:32,216 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:32,217 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:34,720 | INFO     | monitor loop #224: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:34,753 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:34,754 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:37,255 | INFO     | monitor loop #225: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:37,291 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:37,291 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:39,794 | INFO     | monitor loop #226: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:39,830 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:39,831 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:42,334 | INFO     | monitor loop #227: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:42,382 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:42,382 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:44,771 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-07-29 02:44:19] 2023-07-29 01:43:44,885 | INFO     | monitor loop #228: job 0:5916383857 is in state 'stageout'
[2023-07-29 02:44:19] 2023-07-29 01:43:44,912 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-07-29 02:44:19] 2023-07-29 01:43:44,912 | WARNING  | cache file=/home/m/BOINC/slots/1/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/1/agis_ddmendpoints.ag
[2023-07-29 02:44:19] 2023-07-29 01:43:44,970 | INFO     | number of running child processes to parent process 12577: 1
[2023-07-29 02:44:19] 2023-07-29 01:43:44,979 | INFO     | maximum number of monitored processes: 5
[2023-07-29 02:44:19] 2023-07-29 01:43:44,979 | INFO     | transferring file a7fea68a-8f32-4acc-8a9e-4ea7e93ada08_80800.1.job.log.tgz from /home/m/BOINC/slots/1/PanDA_Pilot-5916383857/a7fea68a-8f32-4acc-8a9e-4ea7e93ada08_8
[2023-07-29 02:44:19] 2023-07-29 01:43:44,979 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/1/PanDA_Pilot-5916383857/a7fea68a-8f32-4acc-8a9e-4ea7e93ada08_80800.1.job.log.tgz /home/m/BOINC/slots/1/a7fe
[2023-07-29 02:44:19] 2023-07-29 01:43:44,994 | INFO     | Adding to output.list: a7fea68a-8f32-4acc-8a9e-4ea7e93ada08_80800.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/f5/94/a7fea68a-8f32-
[2023-07-29 02:44:19] 2023-07-29 01:43:44,995 | INFO     | summary of transferred files:
[2023-07-29 02:44:19] 2023-07-29 01:43:44,995 | INFO     |  -- lfn=a7fea68a-8f32-4acc-8a9e-4ea7e93ada08_80800.1.job.log.tgz, status_code=0, status=transferred
[2023-07-29 02:44:19] 2023-07-29 01:43:44,995 | INFO     | stage-out finished correctly
[2023-07-29 02:44:19] 2023-07-29 01:43:47,482 | INFO     | monitor loop #229: job 0:5916383857 is in state 'finished'
[2023-07-29 02:44:19] 2023-07-29 01:43:47,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-29 02:44:19] 2023-07-29 01:43:48,296 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-07-29 02:44:19] 2023-07-29 01:43:49,984 | INFO     | monitor loop #230: job 0:5916383857 is in state 'finished'
[2023-07-29 02:44:19] 2023-07-29 01:43:49,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-29 02:44:19] 2023-07-29 01:43:50,509 | INFO     | job 5916383857 has state=finished
[2023-07-29 02:44:19] 2023-07-29 01:43:50,509 | INFO     | preparing for final server update for job 5916383857 in state='finished'
[2023-07-29 02:44:19] 2023-07-29 01:43:50,509 | INFO     | this job has now completed (state=finished)
[2023-07-29 02:44:19] 2023-07-29 01:43:50,509 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-07-29 02:44:19] 2023-07-29 01:43:50,509 | INFO     | job 5916383857 has finished - writing final server update
[2023-07-29 02:44:19] 2023-07-29 01:43:50,510 | WARNING  | wrong length of table data, x=[1690594107.0, 1690594168.0, 1690594229.0, 1690594290.0, 1690594351.0, 1690594412.0, 1690594473.0], y=[1639528.0, 1650640.0, 1659180.
[2023-07-29 02:44:19] 2023-07-29 01:43:50,511 | INFO     | total number of processed events: 2 (read)
[2023-07-29 02:44:19] 2023-07-29 01:43:50,532 | INFO     | executing command: lscpu
[2023-07-29 02:44:19] 2023-07-29 01:43:50,545 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-07-29 02:44:19] 2023-07-29 01:43:50,545 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-07-29 02:44:19] 2023-07-29 01:43:50,567 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-07-29 02:44:19] 2023-07-29 01:43:52,487 | INFO     | monitor loop #231: job 0:5916383857 is in state 'finished'
[2023-07-29 02:44:19] 2023-07-29 01:43:52,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-29 02:44:19] 2023-07-29 01:43:54,991 | INFO     | monitor loop #232: job 0:5916383857 is in state 'finished'
[2023-07-29 02:44:19] 2023-07-29 01:43:54,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-07-29 02:44:19] 2023-07-29 01:43:57,425 | INFO     | CPU arch script returned: x86-64-v2
[2023-07-29 02:44:19] 2023-07-29 01:43:57,425 | INFO     | using path: /home/m/BOINC/slots/1/PanDA_Pilot-5916383857/memory_monitor_summary.json (trf name=prmon)
[2023-07-29 02:44:19] 2023-07-29 01:43:57,426 | INFO     | extracted standard info from prmon json
[2023-07-29 02:44:19] 2023-07-29 01:43:57,426 | INFO     | extracted standard memory fields from prmon json
[2023-07-29 02:44:19] 2023-07-29 01:43:57,426 | INFO     | ..............................
[2023-07-29 02:44:19] 2023-07-29 01:43:57,426 | INFO     | . Timing measurements:
[2023-07-29 02:44:19] 2023-07-29 01:43:57,426 | INFO     | . get job = 73 s
[2023-07-29 02:44:19] 2023-07-29 01:43:57,426 | INFO     | . initial setup = 83 s
[2023-07-29 02:44:19] 2023-07-29 01:43:57,427 | INFO     | . payload setup = 6 s
[2023-07-29 02:44:19] 2023-07-29 01:43:57,427 | INFO     | . stage-in = 39 s
[2023-07-29 02:44:19] 2023-07-29 01:43:57,427 | INFO     | . payload execution = 827 s
[2023-07-29 02:44:19] 2023-07-29 01:43:57,427 | INFO     | . stage-out = 398 s
[2023-07-29 02:44:19] 2023-07-29 01:43:57,427 | INFO     | ..............................
[2023-07-29 02:44:19] 2023-07-29 01:43:57,530 | INFO     | 
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | job summary report
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | --------------------------------------------------
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | PanDA job id: 5916383857
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | task id: NULL
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | errors: (none)
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | status: LOG_TRANSFER = DONE 
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | pilot state: finished 
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | transexitcode: 0
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | exeerrorcode: 0
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | exeerrordiag: 
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | exitcode: 0
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | exitmsg: OK
[2023-07-29 02:44:19] 2023-07-29 01:43:57,531 | INFO     | cpuconsumptiontime: 673 s
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | nevents: 2
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | neventsw: 0
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | pid: 12577
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | pgrp: 12577
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | corecount: 4
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | event service: False
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | sizes: {0: 2470494, 11: 2470640, 21: 2470668, 32: 2470696, 43: 2470724, 44: 2470812, 53: 2470968, 837: 2491974, 1237: 2501310, 1240: 2501366, 1249: 2501588}
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | --------------------------------------------------
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | 
[2023-07-29 02:44:19] 2023-07-29 01:43:57,532 | INFO     | executing command: ls -lF /home/m/BOINC/slots/1
[2023-07-29 02:44:19] 2023-07-29 01:43:57,547 | INFO     | queue jobs had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,547 | INFO     | queue payloads had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,547 | INFO     | queue data_in had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue data_out had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,549 | INFO     | queue completed_jobids has 1 job(s)
[2023-07-29 02:44:19] 2023-07-29 01:43:57,549 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,549 | INFO     | queue messages had 0 job(s) [purged]
[2023-07-29 02:44:19] 2023-07-29 01:43:57,549 | INFO     | job 5916383857 has completed (purged errors)
[2023-07-29 02:44:19] 2023-07-29 01:43:57,549 | INFO     | overall cleanup function is called
[2023-07-29 02:44:19] 2023-07-29 01:43:58,555 | INFO     | --- collectZombieJob: --- 10, [12577]
[2023-07-29 02:44:19] 2023-07-29 01:43:58,555 | INFO     | zombie collector trying to kill pid 12577
[2023-07-29 02:44:19] 2023-07-29 01:43:58,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-07-29 02:44:19] 2023-07-29 01:43:59,561 | INFO     | collected zombie processes
[2023-07-29 02:44:19] 2023-07-29 01:43:59,561 | INFO     | will now attempt to kill all subprocesses of pid=12577
[2023-07-29 02:44:19] 2023-07-29 01:43:59,603 | INFO     | process IDs to be killed: [12577] (in reverse order)
[2023-07-29 02:44:19] 2023-07-29 01:43:59,636 | WARNING  | found no corresponding commands to process id(s)
[2023-07-29 02:44:19] 2023-07-29 01:43:59,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-07-29 02:44:19] 2023-07-29 01:43:59,637 | INFO     | ready for new job
[2023-07-29 02:44:19] 2023-07-29 01:43:59,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-07-29 02:44:19] 2023-07-29 01:43:59,637 | INFO     | *************************************
[2023-07-29 02:44:19] 2023-07-29 01:43:59,638 | INFO     | ***  PanDA Pilot version 3.6.4.7  ***
[2023-07-29 02:44:19] 2023-07-29 01:43:59,638 | INFO     | *************************************
[2023-07-29 02:44:19] 2023-07-29 01:43:59,638 | INFO     | 
[2023-07-29 02:44:19] 2023-07-29 01:43:59,655 | INFO     | architecture information:
[2023-07-29 02:44:19] 2023-07-29 01:43:59,656 | INFO     | executing command: cat /etc/os-release
[2023-07-29 02:44:19] 2023-07-29 01:43:59,673 | INFO     | cat /etc/os-release:
[2023-07-29 02:44:19] NAME="CentOS Linux"
[2023-07-29 02:44:19] VERSION="7 (Core)"
[2023-07-29 02:44:19] ID="centos"
[2023-07-29 02:44:19] ID_LIKE="rhel fedora"
[2023-07-29 02:44:19] VERSION_ID="7"
[2023-07-29 02:44:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-07-29 02:44:19] ANSI_COLOR="0;31"
[2023-07-29 02:44:19] CPE_NAME="cpe:/o:centos:centos:7"
[2023-07-29 02:44:19] HOME_URL="https://www.centos.org/"
[2023-07-29 02:44:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-07-29 02:44:19] 
[2023-07-29 02:44:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-07-29 02:44:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-07-29 02:44:19] REDHAT_SUPPORT_PRODUCT="centos"
[2023-07-29 02:44:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-07-29 02:44:19] 
[2023-07-29 02:44:19] 2023-07-29 01:43:59,673 | INFO     | *************************************
[2023-07-29 02:44:19] 2023-07-29 01:44:00,176 | INFO     | executing command: df -mP /home/m/BOINC/slots/1
[2023-07-29 02:44:19] 2023-07-29 01:44:00,191 | INFO     | sufficient remaining disk space (423004995584 B)
[2023-07-29 02:44:19] 2023-07-29 01:44:00,191 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-07-29 02:44:19] 2023-07-29 01:44:00,191 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-07-29 02:44:19] 2023-07-29 01:44:00,191 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-07-29 02:44:19] 2023-07-29 01:44:00,192 | INFO     | found 0 job(s) in 20 queues
[2023-07-29 02:44:19] 2023-07-29 01:44:00,192 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-07-29 02:44:19] 2023-07-29 01:44:00,192 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-07-29 02:44:19] 2023-07-29 01:44:00,614 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-07-29 02:44:19] 2023-07-29 01:44:01,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-07-29 02:44:19] 2023-07-29 01:44:01,007 | INFO     | aborting loop
[2023-07-29 02:44:19] 2023-07-29 01:44:01,196 | INFO     | [job] retrieve thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:01,228 | INFO     | [payload] failed_post thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:01,228 | INFO     | [payload] validate_pre thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:01,716 | INFO     | [payload] validate_post thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:01,747 | INFO     | [payload] control thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:01,749 | INFO     | [data] control thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:02,013 | INFO     | [job] job monitor thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:02,270 | INFO     | [job] control thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:02,430 | INFO     | [job] validate thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:02,480 | INFO     | [job] create_data_payload thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:02,487 | INFO     | [payload] execute_payloads thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:02,487 | INFO     | [data] copytool_in thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:02,539 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-07-29 02:44:19] 2023-07-29 01:44:02,620 | INFO     | [data] copytool_out thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:03,361 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-07-29 02:44:19] 2023-07-29 01:44:03,544 | INFO     | [job] queue monitor thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:07,367 | INFO     | [data] queue_monitor thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:10,886 | INFO     | job.realtimelogging is not enabled
[2023-07-29 02:44:19] 2023-07-29 01:44:11,892 | INFO     | [payload] run_realtimelog thread has finished
[2023-07-29 02:44:19] 2023-07-29 01:44:13,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631659263808)>', '<ExcThread(monitor, started 139631232268032)>']
[2023-07-29 02:44:19] 2023-07-29 01:44:14,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-07-29 02:44:19] 2023-07-29 01:44:14,260 | INFO     | [monitor] control thread has ended
[2023-07-29 02:44:19] 2023-07-29 01:44:18,946 | INFO     | end of generic workflow (traces error code: 0)
[2023-07-29 02:44:19] 2023-07-29 01:44:18,946 | INFO     | traces error code: 0
[2023-07-29 02:44:19] 2023-07-29 01:44:18,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-07-29 02:44:19] 2023-07-29 01:44:19,004 [wrapper] ==== pilot stdout END ====
[2023-07-29 02:44:19] 2023-07-29 01:44:19,007 [wrapper] ==== wrapper stdout RESUME ====
[2023-07-29 02:44:19] 2023-07-29 01:44:19,010 [wrapper] pilotpid: 5132
[2023-07-29 02:44:19] 2023-07-29 01:44:19,014 [wrapper] Pilot exit status: 0
[2023-07-29 02:44:19] 2023-07-29 01:44:19,026 [wrapper] pandaids: 5916383857
[2023-07-29 02:44:19] 2023-07-29 01:44:19,032 [wrapper] apfmon messages muted
[2023-07-29 02:44:19] 2023-07-29 01:44:19,035 [wrapper] Test setup, not cleaning
[2023-07-29 02:44:19] 2023-07-29 01:44:19,039 [wrapper] ==== wrapper stdout END ====
[2023-07-29 02:44:19] 2023-07-29 01:44:19,042 [wrapper] ==== wrapper stderr END ====
[2023-07-29 02:44:19] 2023-07-29 01:44:19,052 [wrapper] wrapperexiting ec=0, duration=1493
[2023-07-29 02:44:19] 2023-07-29 01:44:19,055 [wrapper] apfmon messages muted
[2023-07-29 02:44:19]  *** Error codes and diagnostics ***
[2023-07-29 02:44:19]     "exeErrorCode": 0,
[2023-07-29 02:44:19]     "exeErrorDiag": "",
[2023-07-29 02:44:19]     "pilotErrorCode": 0,
[2023-07-29 02:44:19]     "pilotErrorDiag": "",
[2023-07-29 02:44:19]  *** Listing of results directory ***
[2023-07-29 02:44:19] total 45620
[2023-07-29 02:44:19] -rwx------ 1 m m    27277 Jul 29 02:05 runpilot2-wrapper.sh
[2023-07-29 02:44:19] -rw-r--r-- 1 m m     4388 Jul 29 02:05 queuedata.json
[2023-07-29 02:44:19] -rw-r--r-- 1 m m   418016 Jul 29 02:05 pilot3.tar.gz
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m      107 Jul 29 02:19 wrapper_26015_x86_64-pc-linux-gnu
[2023-07-29 02:44:19] -rwxr-xr-x 1 m m     7986 Jul 29 02:19 run_atlas
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m      112 Jul 29 02:19 job.xml
[2023-07-29 02:44:19] -rw-r--r-- 2 m m    17604 Jul 29 02:19 start_atlas.sh
[2023-07-29 02:44:19] drwxrwx--x 2 m m     4096 Jul 29 02:19 shared
[2023-07-29 02:44:19] -rw-r--r-- 2 m m   428856 Jul 29 02:19 input.tar.gz
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m     5728 Jul 29 02:19 init_data.xml
[2023-07-29 02:44:19] -rw-r--r-- 2 m m 38971704 Jul 29 02:19 EVNT.04972714._000035.pool.root.1
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m        0 Jul 29 02:19 boinc_lockfile
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m     2753 Jul 29 02:19 pandaJob.out
[2023-07-29 02:44:19] -rw------- 1 m m      424 Jul 29 02:19 setup.sh.local
[2023-07-29 02:44:19] -rw------- 1 m m  1379189 Jul 29 02:20 cric_ddmendpoints.json
[2023-07-29 02:44:19] -rw------- 1 m m  1013741 Jul 29 02:20 agis_schedconf.cvmfs.json
[2023-07-29 02:44:19] drwx------ 4 m m     4096 Jul 29 02:22 pilot3
[2023-07-29 02:44:19] -rw------- 1 m m  1776880 Jul 29 02:36 output.1.a7fea68a-8f32-4acc-8a9e-4ea7e93ada08_80800.pool.root
[2023-07-29 02:44:19] -rw------- 1 m m     1014 Jul 29 02:37 memory_monitor_summary.json
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m      533 Jul 29 02:37 boinc_task_state.xml
[2023-07-29 02:44:19] -rw------- 1 m m   161970 Jul 29 02:40 a7fea68a-8f32-4acc-8a9e-4ea7e93ada08_80800.1.job.log.tgz
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m       25 Jul 29 02:43 wrapper_checkpoint.txt
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m     8192 Jul 29 02:43 boinc_mmap_file
[2023-07-29 02:44:19] -rw------- 1 m m     7378 Jul 29 02:43 heartbeat.json
[2023-07-29 02:44:19] -rw------- 1 m m     4092 Jul 29 02:44 pilotlog.txt
[2023-07-29 02:44:19] -rw------- 1 m m   201581 Jul 29 02:44 a7fea68a-8f32-4acc-8a9e-4ea7e93ada08_80800.1.job.log
[2023-07-29 02:44:19] -rw------- 1 m m      464 Jul 29 02:44 output.list
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m      748 Jul 29 02:44 runtime_log
[2023-07-29 02:44:19] -rw------- 1 m m  2160640 Jul 29 02:44 result.tar.gz
[2023-07-29 02:44:19] -rw------- 1 m m      627 Jul 29 02:44 ugsNDmCanj3n7Olcko1bjSoqABFKDmABFKDm7AsVDmBCOKDmkYZlwm.diag
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m    11905 Jul 29 02:44 runtime_log.err
[2023-07-29 02:44:19] -rw-rw-r-- 1 m m    22577 Jul 29 02:44 stderr.txt
[2023-07-29 02:44:19] HITS file was successfully produced:
[2023-07-29 02:44:19] -rw------- 1 m m 1776880 Jul 29 02:36 shared/HITS.pool.root.1
[2023-07-29 02:44:19]  *** Contents of shared directory: ***
[2023-07-29 02:44:19] total 42348
[2023-07-29 02:44:19] -rw-r--r-- 2 m m    17604 Jul 29 02:19 start_atlas.sh
[2023-07-29 02:44:19] -rw-r--r-- 2 m m   428856 Jul 29 02:19 input.tar.gz
[2023-07-29 02:44:19] -rw-r--r-- 2 m m 38971704 Jul 29 02:19 ATLAS.root_0
[2023-07-29 02:44:19] -rw------- 1 m m  1776880 Jul 29 02:36 HITS.pool.root.1
[2023-07-29 02:44:19] -rw------- 1 m m  2160640 Jul 29 02:44 result.tar.gz
02:44:20 (1209): run_atlas exited; CPU time 660.766670
02:44:20 (1209): called boinc_finish(0)

</stderr_txt>
]]>


©2024 CERN