Name LLPODmDYcl3n7Olcko1bjSoqABFKDmABFKDm7AsVDmlVOKDmdgMNEm_0
Workunit 2322683
Created 3 Aug 2023, 1:43:36 UTC
Sent 3 Aug 2023, 1:43:43 UTC
Report deadline 10 Aug 2023, 1:43:43 UTC
Received 3 Aug 2023, 2:17:05 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1498
Run time 31 min 5 sec
CPU time 3 min 29 sec
Validate state Valid
Credit 21.21
Device peak FLOPS 13.05 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 2.60 GB
Peak swap size 3.10 GB
Peak disk usage 81.74 MB

Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:44:49 (13040): wrapper (7.7.26015): starting
02:44:49 (13040): wrapper: running run_atlas (--nthreads 4)
[2023-08-03 02:44:49] Arguments: --nthreads 4
[2023-08-03 02:44:49] Threads: 4
[2023-08-03 02:44:49] Checking for CVMFS
[2023-08-03 02:44:52] Probing /cvmfs/atlas.cern.ch... OK
[2023-08-03 02:44:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-08-03 02:44:58] Running cvmfs_config stat atlas.cern.ch
[2023-08-03 02:44:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-08-03 02:44:59] 2.9.0.0 13185 0 24456 122019 3 1 3487677 4194305 0 130560 0 0 0.000 829 462 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-08-03 02:44:59] CVMFS is ok
[2023-08-03 02:44:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-08-03 02:44:59] Checking for apptainer binary...
[2023-08-03 02:44:59] Using apptainer found in PATH at /usr/bin/apptainer
[2023-08-03 02:44:59] Running /usr/bin/apptainer --version
[2023-08-03 02:44:59] apptainer version 1.0.3
[2023-08-03 02:44:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-08-03 02:45:00] TeeC16
[2023-08-03 02:45:00] apptainer works
[2023-08-03 02:45:00] Set ATHENA_PROC_NUMBER=4
[2023-08-03 02:45:00] Set ATHENA_CORE_NUMBER=4
[2023-08-03 02:45:00] Starting ATLAS job with PandaID=5920877767
[2023-08-03 02:45:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-08-03 03:15:51]  *** The last 200 lines of the pilot log: ***
[2023-08-03 03:15:51] 2023-08-03 02:15:01,136 | INFO     | executing command: df -mP /home/m/BOINC/slots/1
[2023-08-03 03:15:51] 2023-08-03 02:15:01,147 | INFO     | sufficient remaining disk space (424230780928 B)
[2023-08-03 03:15:51] 2023-08-03 02:15:01,147 | INFO     | work directory size check will use 61362667520 B as a max limit (10% grace limit added)
[2023-08-03 03:15:51] 2023-08-03 02:15:01,148 | INFO     | size of work directory /home/m/BOINC/slots/1/PanDA_Pilot-5920877767: 1091733 B (within 61362667520 B limit)
[2023-08-03 03:15:51] 2023-08-03 02:15:01,148 | INFO     | pfn file=/home/m/BOINC/slots/1/PanDA_Pilot-5920877767/output.1.137c780e-5196-46ac-beff-e8c5524b762f_77969.pool.root does not exist (skip from workdir size calculat
[2023-08-03 03:15:51] 2023-08-03 02:15:01,148 | INFO     | total size of present files: 0 B (workdir size: 1091733 B)
[2023-08-03 03:15:51] 2023-08-03 02:15:01,148 | INFO     | output file size check: skipping output file /home/m/BOINC/slots/1/PanDA_Pilot-5920877767/output.1.137c780e-5196-46ac-beff-e8c5524b762f_77969.pool.root since it do
[2023-08-03 03:15:51] 2023-08-03 02:15:01,187 | INFO     | number of running child processes to parent process 23516: 1
[2023-08-03 03:15:51] 2023-08-03 02:15:01,187 | INFO     | maximum number of monitored processes: 7
[2023-08-03 03:15:51] 2023-08-03 02:15:03,690 | INFO     | monitor loop #251: job 0:5920877767 is in state 'stageout'
[2023-08-03 03:15:51] 2023-08-03 02:15:03,733 | INFO     | number of running child processes to parent process 23516: 1
[2023-08-03 03:15:51] 2023-08-03 02:15:03,734 | INFO     | maximum number of monitored processes: 7
[2023-08-03 03:15:51] 2023-08-03 02:15:06,237 | INFO     | monitor loop #252: job 0:5920877767 is in state 'stageout'
[2023-08-03 03:15:51] 2023-08-03 02:15:06,282 | INFO     | number of running child processes to parent process 23516: 1
[2023-08-03 03:15:51] 2023-08-03 02:15:06,282 | INFO     | maximum number of monitored processes: 7
[2023-08-03 03:15:51] 2023-08-03 02:15:08,786 | INFO     | monitor loop #253: job 0:5920877767 is in state 'stageout'
[2023-08-03 03:15:51] 2023-08-03 02:15:08,824 | INFO     | number of running child processes to parent process 23516: 1
[2023-08-03 03:15:51] 2023-08-03 02:15:08,824 | INFO     | maximum number of monitored processes: 7
[2023-08-03 03:15:51] 2023-08-03 02:15:11,327 | INFO     | monitor loop #254: job 0:5920877767 is in state 'stageout'
[2023-08-03 03:15:51] 2023-08-03 02:15:11,369 | INFO     | number of running child processes to parent process 23516: 1
[2023-08-03 03:15:51] 2023-08-03 02:15:11,370 | INFO     | maximum number of monitored processes: 7
[2023-08-03 03:15:51] 2023-08-03 02:15:13,873 | INFO     | monitor loop #255: job 0:5920877767 is in state 'stageout'
[2023-08-03 03:15:51] 2023-08-03 02:15:13,915 | INFO     | number of running child processes to parent process 23516: 1
[2023-08-03 03:15:51] 2023-08-03 02:15:13,915 | INFO     | maximum number of monitored processes: 7
[2023-08-03 03:15:51] 2023-08-03 02:15:16,418 | INFO     | monitor loop #256: job 0:5920877767 is in state 'stageout'
[2023-08-03 03:15:51] 2023-08-03 02:15:16,456 | INFO     | number of running child processes to parent process 23516: 1
[2023-08-03 03:15:51] 2023-08-03 02:15:16,456 | INFO     | maximum number of monitored processes: 7
[2023-08-03 03:15:51] 2023-08-03 02:15:17,947 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-08-03 03:15:51] 2023-08-03 02:15:18,139 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-08-03 03:15:51] 2023-08-03 02:15:18,139 | WARNING  | cache file=/home/m/BOINC/slots/1/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/1/agis_ddmendpoints.ag
[2023-08-03 03:15:51] 2023-08-03 02:15:18,191 | INFO     | transferring file 137c780e-5196-46ac-beff-e8c5524b762f_77969.1.job.log.tgz from /home/m/BOINC/slots/1/PanDA_Pilot-5920877767/137c780e-5196-46ac-beff-e8c5524b762f_7
[2023-08-03 03:15:51] 2023-08-03 02:15:18,191 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/1/PanDA_Pilot-5920877767/137c780e-5196-46ac-beff-e8c5524b762f_77969.1.job.log.tgz /home/m/BOINC/slots/1/137c
[2023-08-03 03:15:51] 2023-08-03 02:15:18,206 | INFO     | Adding to output.list: 137c780e-5196-46ac-beff-e8c5524b762f_77969.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/b2/5e/137c780e-5196-
[2023-08-03 03:15:51] 2023-08-03 02:15:18,206 | INFO     | summary of transferred files:
[2023-08-03 03:15:51] 2023-08-03 02:15:18,206 | INFO     |  -- lfn=137c780e-5196-46ac-beff-e8c5524b762f_77969.1.job.log.tgz, status_code=0, status=transferred
[2023-08-03 03:15:51] 2023-08-03 02:15:18,207 | INFO     | stage-out finished correctly
[2023-08-03 03:15:51] 2023-08-03 02:15:18,958 | INFO     | monitor loop #257: job 0:5920877767 is in state 'finished'
[2023-08-03 03:15:51] 2023-08-03 02:15:18,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-03 03:15:51] 2023-08-03 02:15:19,132 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-08-03 03:15:51] 2023-08-03 02:15:20,547 | INFO     | job 5920877767 has state=finished
[2023-08-03 03:15:51] 2023-08-03 02:15:20,548 | INFO     | preparing for final server update for job 5920877767 in state='finished'
[2023-08-03 03:15:51] 2023-08-03 02:15:20,548 | INFO     | this job has now completed (state=finished)
[2023-08-03 03:15:51] 2023-08-03 02:15:20,548 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-08-03 03:15:51] 2023-08-03 02:15:20,548 | INFO     | job 5920877767 has finished - writing final server update
[2023-08-03 03:15:51] 2023-08-03 02:15:20,549 | INFO     | fitting pss+swap vs Time
[2023-08-03 03:15:51] 2023-08-03 02:15:20,549 | INFO     | current memory leak: 2795.02 B/s (using 12 data points, chi2=0.13)
[2023-08-03 03:15:51] 2023-08-03 02:15:20,550 | INFO     | total number of processed events: 2 (read)
[2023-08-03 03:15:51] 2023-08-03 02:15:20,567 | INFO     | executing command: lscpu
[2023-08-03 03:15:51] 2023-08-03 02:15:20,579 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-08-03 03:15:51] 2023-08-03 02:15:20,579 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-08-03 03:15:51] 2023-08-03 02:15:20,601 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-08-03 03:15:51] 2023-08-03 02:15:21,461 | INFO     | monitor loop #258: job 0:5920877767 is in state 'finished'
[2023-08-03 03:15:51] 2023-08-03 02:15:21,462 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-03 03:15:51] 2023-08-03 02:15:23,964 | INFO     | monitor loop #259: job 0:5920877767 is in state 'finished'
[2023-08-03 03:15:51] 2023-08-03 02:15:23,965 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-03 03:15:51] 2023-08-03 02:15:26,466 | INFO     | monitor loop #260: job 0:5920877767 is in state 'finished'
[2023-08-03 03:15:51] 2023-08-03 02:15:26,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-03 03:15:51] 2023-08-03 02:15:28,969 | INFO     | monitor loop #261: job 0:5920877767 is in state 'finished'
[2023-08-03 03:15:51] 2023-08-03 02:15:28,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-03 03:15:51] 2023-08-03 02:15:29,010 | INFO     | 1773s have passed since pilot start
[2023-08-03 03:15:51] 2023-08-03 02:15:30,886 | INFO     | CPU arch script returned: x86-64-v2
[2023-08-03 03:15:51] 2023-08-03 02:15:30,886 | INFO     | using path: /home/m/BOINC/slots/1/PanDA_Pilot-5920877767/memory_monitor_summary.json (trf name=prmon)
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | extracted standard info from prmon json
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | extracted standard memory fields from prmon json
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | ..............................
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | . Timing measurements:
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | . get job = 58 s
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | . initial setup = 59 s
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | . payload setup = 44 s
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | . stage-in = 72 s
[2023-08-03 03:15:51] 2023-08-03 02:15:30,887 | INFO     | . payload execution = 1137 s
[2023-08-03 03:15:51] 2023-08-03 02:15:30,888 | INFO     | . stage-out = 370 s
[2023-08-03 03:15:51] 2023-08-03 02:15:30,888 | INFO     | ..............................
[2023-08-03 03:15:51] 2023-08-03 02:15:31,008 | INFO     | 
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | job summary report
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | --------------------------------------------------
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | PanDA job id: 5920877767
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | task id: NULL
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | errors: (none)
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | status: LOG_TRANSFER = DONE 
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | pilot state: finished 
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | transexitcode: 0
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | exeerrorcode: 0
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | exeerrordiag: 
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | exitcode: 0
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | exitmsg: OK
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | cpuconsumptiontime: 226 s
[2023-08-03 03:15:51] 2023-08-03 02:15:31,009 | INFO     | nevents: 2
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | neventsw: 0
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | pid: 23516
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | pgrp: 23516
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | corecount: 4
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | event service: False
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | sizes: {0: 2470324, 11: 2470470, 21: 2470498, 32: 2470526, 43: 2470554, 53: 2470582, 64: 2470738, 74: 2470794, 77: 2470882, 85: 2470938, 1185: 2493979, 1556: 25032
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | --------------------------------------------------
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | 
[2023-08-03 03:15:51] 2023-08-03 02:15:31,010 | INFO     | executing command: ls -lF /home/m/BOINC/slots/1
[2023-08-03 03:15:51] 2023-08-03 02:15:31,024 | INFO     | queue jobs had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue payloads had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue data_in had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue data_out had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,025 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue completed_jobids has 1 job(s)
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,026 | INFO     | queue messages had 0 job(s) [purged]
[2023-08-03 03:15:51] 2023-08-03 02:15:31,027 | INFO     | job 5920877767 has completed (purged errors)
[2023-08-03 03:15:51] 2023-08-03 02:15:31,027 | INFO     | overall cleanup function is called
[2023-08-03 03:15:51] 2023-08-03 02:15:32,029 | INFO     | --- collectZombieJob: --- 10, [23516]
[2023-08-03 03:15:51] 2023-08-03 02:15:32,029 | INFO     | zombie collector trying to kill pid 23516
[2023-08-03 03:15:51] 2023-08-03 02:15:32,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-08-03 03:15:51] 2023-08-03 02:15:33,034 | INFO     | collected zombie processes
[2023-08-03 03:15:51] 2023-08-03 02:15:33,035 | INFO     | will now attempt to kill all subprocesses of pid=23516
[2023-08-03 03:15:51] 2023-08-03 02:15:33,072 | INFO     | process IDs to be killed: [23516] (in reverse order)
[2023-08-03 03:15:51] 2023-08-03 02:15:33,107 | WARNING  | found no corresponding commands to process id(s)
[2023-08-03 03:15:51] 2023-08-03 02:15:33,107 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-08-03 03:15:51] 2023-08-03 02:15:33,108 | INFO     | ready for new job
[2023-08-03 03:15:51] 2023-08-03 02:15:33,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-08-03 03:15:51] 2023-08-03 02:15:33,109 | INFO     | *************************************
[2023-08-03 03:15:51] 2023-08-03 02:15:33,109 | INFO     | ***  PanDA Pilot version 3.6.4.7  ***
[2023-08-03 03:15:51] 2023-08-03 02:15:33,109 | INFO     | *************************************
[2023-08-03 03:15:51] 2023-08-03 02:15:33,109 | INFO     | 
[2023-08-03 03:15:51] 2023-08-03 02:15:33,126 | INFO     | architecture information:
[2023-08-03 03:15:51] 2023-08-03 02:15:33,127 | INFO     | executing command: cat /etc/os-release
[2023-08-03 03:15:51] 2023-08-03 02:15:33,137 | INFO     | cat /etc/os-release:
[2023-08-03 03:15:51] NAME="CentOS Linux"
[2023-08-03 03:15:51] VERSION="7 (Core)"
[2023-08-03 03:15:51] ID="centos"
[2023-08-03 03:15:51] ID_LIKE="rhel fedora"
[2023-08-03 03:15:51] VERSION_ID="7"
[2023-08-03 03:15:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-08-03 03:15:51] ANSI_COLOR="0;31"
[2023-08-03 03:15:51] CPE_NAME="cpe:/o:centos:centos:7"
[2023-08-03 03:15:51] HOME_URL="https://www.centos.org/"
[2023-08-03 03:15:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-08-03 03:15:51] 
[2023-08-03 03:15:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-08-03 03:15:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-08-03 03:15:51] REDHAT_SUPPORT_PRODUCT="centos"
[2023-08-03 03:15:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-08-03 03:15:51] 
[2023-08-03 03:15:51] 2023-08-03 02:15:33,137 | INFO     | *************************************
[2023-08-03 03:15:51] 2023-08-03 02:15:33,640 | INFO     | executing command: df -mP /home/m/BOINC/slots/1
[2023-08-03 03:15:51] 2023-08-03 02:15:33,652 | INFO     | sufficient remaining disk space (424231829504 B)
[2023-08-03 03:15:51] 2023-08-03 02:15:33,653 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-08-03 03:15:51] 2023-08-03 02:15:33,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-08-03 03:15:51] 2023-08-03 02:15:33,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-08-03 03:15:51] 2023-08-03 02:15:33,981 | WARNING  | job monitor detected an abort_job request (signal=None)
[2023-08-03 03:15:51] 2023-08-03 02:15:33,981 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-08-03 03:15:51] 2023-08-03 02:15:33,981 | INFO     | will abort loop
[2023-08-03 03:15:51] 2023-08-03 02:15:34,025 | INFO     | found 0 job(s) in 20 queues
[2023-08-03 03:15:51] 2023-08-03 02:15:34,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-08-03 03:15:51] 2023-08-03 02:15:34,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-08-03 03:15:51] 2023-08-03 02:15:34,201 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-08-03 03:15:51] 2023-08-03 02:15:34,658 | INFO     | [job] retrieve thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:34,742 | INFO     | [data] control thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:34,801 | INFO     | [payload] validate_post thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:34,911 | INFO     | [payload] control thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:34,986 | INFO     | [job] job monitor thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:35,135 | INFO     | [job] validate thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:35,304 | INFO     | [job] create_data_payload thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:35,339 | INFO     | [data] copytool_in thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:35,374 | INFO     | [payload] failed_post thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:35,386 | INFO     | [payload] validate_pre thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:35,798 | INFO     | [data] copytool_out thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:35,854 | INFO     | [job] control thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:35,953 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-08-03 03:15:51] 2023-08-03 02:15:36,107 | INFO     | [payload] execute_payloads thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:36,958 | INFO     | [job] queue monitor thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:38,206 | INFO     | [data] queue_monitor thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:43,805 | INFO     | job.realtimelogging is not enabled
[2023-08-03 03:15:51] 2023-08-03 02:15:44,811 | INFO     | [payload] run_realtimelog thread has finished
[2023-08-03 03:15:51] 2023-08-03 02:15:46,187 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872692311872)>', '<ExcThread(monitor, started 139872052442880)>']
[2023-08-03 03:15:51] 2023-08-03 02:15:47,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-08-03 03:15:51] 2023-08-03 02:15:47,079 | INFO     | [monitor] control thread has ended
[2023-08-03 03:15:51] 2023-08-03 02:15:51,213 | INFO     | end of generic workflow (traces error code: 0)
[2023-08-03 03:15:51] 2023-08-03 02:15:51,213 | INFO     | traces error code: 0
[2023-08-03 03:15:51] 2023-08-03 02:15:51,213 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-08-03 03:15:51] 2023-08-03 02:15:51,266 [wrapper] ==== pilot stdout END ====
[2023-08-03 03:15:51] 2023-08-03 02:15:51,269 [wrapper] ==== wrapper stdout RESUME ====
[2023-08-03 03:15:51] 2023-08-03 02:15:51,272 [wrapper] pilotpid: 16725
[2023-08-03 03:15:51] 2023-08-03 02:15:51,275 [wrapper] Pilot exit status: 0
[2023-08-03 03:15:51] 2023-08-03 02:15:51,284 [wrapper] pandaids: 5920877767
[2023-08-03 03:15:51] 2023-08-03 02:15:51,290 [wrapper] apfmon messages muted
[2023-08-03 03:15:51] 2023-08-03 02:15:51,293 [wrapper] Test setup, not cleaning
[2023-08-03 03:15:51] 2023-08-03 02:15:51,296 [wrapper] ==== wrapper stdout END ====
[2023-08-03 03:15:51] 2023-08-03 02:15:51,300 [wrapper] ==== wrapper stderr END ====
[2023-08-03 03:15:51] 2023-08-03 02:15:51,307 [wrapper] wrapperexiting ec=0, duration=1850
[2023-08-03 03:15:51] 2023-08-03 02:15:51,309 [wrapper] apfmon messages muted
[2023-08-03 03:15:51]  *** Error codes and diagnostics ***
[2023-08-03 03:15:51]     "exeErrorCode": 0,
[2023-08-03 03:15:51]     "exeErrorDiag": "",
[2023-08-03 03:15:51]     "pilotErrorCode": 0,
[2023-08-03 03:15:51]     "pilotErrorDiag": "",
[2023-08-03 03:15:51]  *** Listing of results directory ***
[2023-08-03 03:15:51] total 44680
[2023-08-03 03:15:51] -rw-r--r-- 1 m m   418016 Aug  3 02:36 pilot3.tar.gz
[2023-08-03 03:15:51] -rwx------ 1 m m    27277 Aug  3 02:43 runpilot2-wrapper.sh
[2023-08-03 03:15:51] -rw-r--r-- 1 m m     4388 Aug  3 02:43 queuedata.json
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m      107 Aug  3 02:44 wrapper_26015_x86_64-pc-linux-gnu
[2023-08-03 03:15:51] -rwxr-xr-x 1 m m     7986 Aug  3 02:44 run_atlas
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m      112 Aug  3 02:44 job.xml
[2023-08-03 03:15:51] -rw-r--r-- 2 m m    17604 Aug  3 02:44 start_atlas.sh
[2023-08-03 03:15:51] drwxrwx--x 2 m m     4096 Aug  3 02:44 shared
[2023-08-03 03:15:51] -rw-r--r-- 2 m m   428812 Aug  3 02:44 input.tar.gz
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m     5728 Aug  3 02:44 init_data.xml
[2023-08-03 03:15:51] -rw-r--r-- 2 m m 37965264 Aug  3 02:44 EVNT.04972714._000027.pool.root.1
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m        0 Aug  3 02:44 boinc_lockfile
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m     2681 Aug  3 02:45 pandaJob.out
[2023-08-03 03:15:51] -rw------- 1 m m      424 Aug  3 02:45 setup.sh.local
[2023-08-03 03:15:51] -rw------- 1 m m  1013239 Aug  3 02:45 agis_schedconf.cvmfs.json
[2023-08-03 03:15:51] -rw------- 1 m m  1379189 Aug  3 02:46 cric_ddmendpoints.json
[2023-08-03 03:15:51] drwx------ 4 m m     4096 Aug  3 02:47 pilot3
[2023-08-03 03:15:51] -rw------- 1 m m  1750561 Aug  3 03:08 output.1.137c780e-5196-46ac-beff-e8c5524b762f_77969.pool.root
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m      533 Aug  3 03:09 boinc_task_state.xml
[2023-08-03 03:15:51] -rw------- 1 m m     1027 Aug  3 03:09 memory_monitor_summary.json
[2023-08-03 03:15:51] -rw------- 1 m m   181528 Aug  3 03:12 137c780e-5196-46ac-beff-e8c5524b762f_77969.1.job.log.tgz
[2023-08-03 03:15:51] -rw------- 1 m m     7550 Aug  3 03:15 heartbeat.json
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m     8192 Aug  3 03:15 boinc_mmap_file
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m       25 Aug  3 03:15 wrapper_checkpoint.txt
[2023-08-03 03:15:51] -rw------- 1 m m     4064 Aug  3 03:15 pilotlog.txt
[2023-08-03 03:15:51] -rw------- 1 m m   230043 Aug  3 03:15 137c780e-5196-46ac-beff-e8c5524b762f_77969.1.job.log
[2023-08-03 03:15:51] -rw------- 1 m m      464 Aug  3 03:15 output.list
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m      748 Aug  3 03:15 runtime_log
[2023-08-03 03:15:51] -rw------- 1 m m  2181120 Aug  3 03:15 result.tar.gz
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m    11905 Aug  3 03:15 runtime_log.err
[2023-08-03 03:15:51] -rw------- 1 m m      627 Aug  3 03:15 LLPODmDYcl3n7Olcko1bjSoqABFKDmABFKDm7AsVDmlVOKDmdgMNEm.diag
[2023-08-03 03:15:51] -rw-rw-r-- 1 m m    22767 Aug  3 03:15 stderr.txt
[2023-08-03 03:15:51] HITS file was successfully produced:
[2023-08-03 03:15:51] -rw------- 1 m m 1750561 Aug  3 03:08 shared/HITS.pool.root.1
[2023-08-03 03:15:51]  *** Contents of shared directory: ***
[2023-08-03 03:15:51] total 41360
[2023-08-03 03:15:51] -rw-r--r-- 2 m m    17604 Aug  3 02:44 start_atlas.sh
[2023-08-03 03:15:51] -rw-r--r-- 2 m m   428812 Aug  3 02:44 input.tar.gz
[2023-08-03 03:15:51] -rw-r--r-- 2 m m 37965264 Aug  3 02:44 ATLAS.root_0
[2023-08-03 03:15:51] -rw------- 1 m m  1750561 Aug  3 03:08 HITS.pool.root.1
[2023-08-03 03:15:51] -rw------- 1 m m  2181120 Aug  3 03:15 result.tar.gz
03:15:53 (13040): run_atlas exited; CPU time 209.659754
03:15:53 (13040): called boinc_finish(0)

</stderr_txt>
]]>


©2024 CERN