Stderr output

<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
16:49:01 (31049): wrapper (7.7.26015): starting
16:49:01 (31049): wrapper: running run_atlas (--nthreads 1)
[2023-08-30 16:49:01] Arguments: --nthreads 1
[2023-08-30 16:49:01] Threads: 1
[2023-08-30 16:49:01] Checking for CVMFS
[2023-08-30 16:49:01] Probing /cvmfs/atlas.cern.ch... OK
[2023-08-30 16:49:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-08-30 16:49:01] Running cvmfs_config stat atlas.cern.ch
[2023-08-30 16:49:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-08-30 16:49:01] 2.6.3.0 6998 24 34784 123066 3 65 2611344 2816000 0 65024 0 91460 99.9257 2380 467 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
[2023-08-30 16:49:01] CVMFS is ok
[2023-08-30 16:49:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-08-30 16:49:01] Checking for apptainer binary...
[2023-08-30 16:49:01] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2023-08-30 16:49:01] apptainer is not installed, using version from CVMFS
[2023-08-30 16:49:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-08-30 16:49:12] HPi7COS7
[2023-08-30 16:49:12] apptainer works
[2023-08-30 16:49:12] Starting ATLAS job with PandaID=5947362351
[2023-08-30 16:49:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-08-30 17:13:45]  *** The last 200 lines of the pilot log: ***
[2023-08-30 17:13:45] 2023-08-30 15:12:55,982 | INFO     | number of running child processes to parent process 9553: 1
[2023-08-30 17:13:45] 2023-08-30 15:12:55,982 | INFO     | maximum number of monitored processes: 8
[2023-08-30 17:13:45] 2023-08-30 15:12:58,507 | INFO     | monitor loop #181: job 0:5947362351 is in state 'stageout'
[2023-08-30 17:13:45] 2023-08-30 15:12:58,578 | INFO     | number of running child processes to parent process 9553: 1
[2023-08-30 17:13:45] 2023-08-30 15:12:58,578 | INFO     | maximum number of monitored processes: 8
[2023-08-30 17:13:45] 2023-08-30 15:13:01,084 | INFO     | monitor loop #182: job 0:5947362351 is in state 'stageout'
[2023-08-30 17:13:45] 2023-08-30 15:13:01,085 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 778624 B
[2023-08-30 17:13:45] 2023-08-30 15:13:01,085 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 8851 B
[2023-08-30 17:13:45] 2023-08-30 15:13:01,085 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2023-08-30 17:13:45] 2023-08-30 15:13:01,110 | INFO     | sufficient remaining disk space (10514071552 B)
[2023-08-30 17:13:45] 2023-08-30 15:13:01,110 | INFO     | work directory size check will use 61362667520 B as a max limit (10% grace limit added)
[2023-08-30 17:13:45] 2023-08-30 15:13:01,111 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-5947362351: 1120417 B (within 61362667520 B limit)
[2023-08-30 17:13:45] 2023-08-30 15:13:01,111 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-5947362351/output.1.369ed366-e466-4362-8fff-a68733dc497d_92433.pool.root does not exist (skip from workdir size calcula
[2023-08-30 17:13:45] 2023-08-30 15:13:01,111 | INFO     | total size of present files: 0 B (workdir size: 1120417 B)
[2023-08-30 17:13:45] 2023-08-30 15:13:01,111 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-5947362351/output.1.369ed366-e466-4362-8fff-a68733dc497d_92433.pool.root since it d
[2023-08-30 17:13:45] 2023-08-30 15:13:01,178 | INFO     | number of running child processes to parent process 9553: 1
[2023-08-30 17:13:45] 2023-08-30 15:13:01,178 | INFO     | maximum number of monitored processes: 8
[2023-08-30 17:13:45] 2023-08-30 15:13:03,694 | INFO     | monitor loop #183: job 0:5947362351 is in state 'stageout'
[2023-08-30 17:13:45] 2023-08-30 15:13:03,777 | INFO     | number of running child processes to parent process 9553: 1
[2023-08-30 17:13:45] 2023-08-30 15:13:03,778 | INFO     | maximum number of monitored processes: 8
[2023-08-30 17:13:45] 2023-08-30 15:13:06,306 | INFO     | monitor loop #184: job 0:5947362351 is in state 'stageout'
[2023-08-30 17:13:45] 2023-08-30 15:13:06,397 | INFO     | number of running child processes to parent process 9553: 1
[2023-08-30 17:13:45] 2023-08-30 15:13:06,398 | INFO     | maximum number of monitored processes: 8
[2023-08-30 17:13:45] 2023-08-30 15:13:08,909 | INFO     | monitor loop #185: job 0:5947362351 is in state 'stageout'
[2023-08-30 17:13:45] 2023-08-30 15:13:09,080 | INFO     | number of running child processes to parent process 9553: 1
[2023-08-30 17:13:45] 2023-08-30 15:13:09,080 | INFO     | maximum number of monitored processes: 8
[2023-08-30 17:13:45] 2023-08-30 15:13:09,790 | INFO     | 1429s have passed since pilot start
[2023-08-30 17:13:45] 2023-08-30 15:13:10,117 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-08-30 17:13:45] 2023-08-30 15:13:10,209 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-08-30 17:13:45] 2023-08-30 15:13:10,210 | WARNING  | cache file=/var/lib/boinc/slots/1/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc/slots/1/agis_ddmendpoints.
[2023-08-30 17:13:45] 2023-08-30 15:13:10,304 | INFO     | transferring file 369ed366-e466-4362-8fff-a68733dc497d_92433.1.job.log.tgz from /var/lib/boinc/slots/1/PanDA_Pilot-5947362351/369ed366-e466-4362-8fff-a68733dc497d_
[2023-08-30 17:13:45] 2023-08-30 15:13:10,305 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-5947362351/369ed366-e466-4362-8fff-a68733dc497d_92433.1.job.log.tgz /var/lib/boinc/slots/1/36
[2023-08-30 17:13:45] 2023-08-30 15:13:10,321 | INFO     | Adding to output.list: 369ed366-e466-4362-8fff-a68733dc497d_92433.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/fc/75/369ed366-e466-
[2023-08-30 17:13:45] 2023-08-30 15:13:10,322 | INFO     | summary of transferred files:
[2023-08-30 17:13:45] 2023-08-30 15:13:10,322 | INFO     |  -- lfn=369ed366-e466-4362-8fff-a68733dc497d_92433.1.job.log.tgz, status_code=0, status=transferred
[2023-08-30 17:13:45] 2023-08-30 15:13:10,322 | INFO     | stage-out finished correctly
[2023-08-30 17:13:45] 2023-08-30 15:13:10,640 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-08-30 17:13:45] 2023-08-30 15:13:10,811 | INFO     | job 5947362351 has state=finished
[2023-08-30 17:13:45] 2023-08-30 15:13:10,812 | INFO     | preparing for final server update for job 5947362351 in state='finished'
[2023-08-30 17:13:45] 2023-08-30 15:13:10,812 | INFO     | this job has now completed (state=finished)
[2023-08-30 17:13:45] 2023-08-30 15:13:10,812 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-08-30 17:13:45] 2023-08-30 15:13:10,812 | INFO     | job 5947362351 has finished - writing final server update
[2023-08-30 17:13:45] 2023-08-30 15:13:10,814 | INFO     | fitting pss+swap vs Time
[2023-08-30 17:13:45] 2023-08-30 15:13:10,814 | INFO     | current memory leak: 70.55 B/s (using 8 data points, chi2=0.00)
[2023-08-30 17:13:45] 2023-08-30 15:13:10,815 | INFO     | total number of processed events: 2 (read)
[2023-08-30 17:13:45] 2023-08-30 15:13:10,816 | INFO     | executing command: lscpu
[2023-08-30 17:13:45] 2023-08-30 15:13:10,838 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-08-30 17:13:45] 2023-08-30 15:13:10,839 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-08-30 17:13:45] 2023-08-30 15:13:10,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-08-30 17:13:45] 2023-08-30 15:13:11,592 | INFO     | monitor loop #186: job 0:5947362351 is in state 'finished'
[2023-08-30 17:13:45] 2023-08-30 15:13:11,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-30 17:13:45] 2023-08-30 15:13:14,112 | INFO     | monitor loop #187: job 0:5947362351 is in state 'finished'
[2023-08-30 17:13:45] 2023-08-30 15:13:14,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-30 17:13:45] 2023-08-30 15:13:16,633 | INFO     | monitor loop #188: job 0:5947362351 is in state 'finished'
[2023-08-30 17:13:45] 2023-08-30 15:13:16,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-30 17:13:45] 2023-08-30 15:13:19,157 | INFO     | monitor loop #189: job 0:5947362351 is in state 'finished'
[2023-08-30 17:13:45] 2023-08-30 15:13:19,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-30 17:13:45] 2023-08-30 15:13:21,672 | INFO     | monitor loop #190: job 0:5947362351 is in state 'finished'
[2023-08-30 17:13:45] 2023-08-30 15:13:21,672 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-08-30 17:13:45] 2023-08-30 15:13:22,850 | INFO     | CPU arch script returned: x86-64-v2
[2023-08-30 17:13:45] 2023-08-30 15:13:22,852 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-5947362351/memory_monitor_summary.json (trf name=prmon)
[2023-08-30 17:13:45] 2023-08-30 15:13:22,856 | INFO     | extracted standard info from prmon json
[2023-08-30 17:13:45] 2023-08-30 15:13:22,857 | INFO     | extracted standard memory fields from prmon json
[2023-08-30 17:13:45] 2023-08-30 15:13:22,858 | INFO     | ..............................
[2023-08-30 17:13:45] 2023-08-30 15:13:22,858 | INFO     | . Timing measurements:
[2023-08-30 17:13:45] 2023-08-30 15:13:22,858 | INFO     | . get job = 43 s
[2023-08-30 17:13:45] 2023-08-30 15:13:22,858 | INFO     | . initial setup = 66 s
[2023-08-30 17:13:45] 2023-08-30 15:13:22,858 | INFO     | . payload setup = 13 s
[2023-08-30 17:13:45] 2023-08-30 15:13:22,858 | INFO     | . stage-in = 87 s
[2023-08-30 17:13:45] 2023-08-30 15:13:22,858 | INFO     | . payload execution = 889 s
[2023-08-30 17:13:45] 2023-08-30 15:13:22,858 | INFO     | . stage-out = 306 s
[2023-08-30 17:13:45] 2023-08-30 15:13:22,859 | INFO     | ..............................
[2023-08-30 17:13:45] 2023-08-30 15:13:23,018 | INFO     | 
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | job summary report
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | --------------------------------------------------
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | PanDA job id: 5947362351
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | task id: NULL
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | errors: (none)
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | status: LOG_TRANSFER = DONE 
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | pilot state: finished 
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | transexitcode: 0
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | exeerrorcode: 0
[2023-08-30 17:13:45] 2023-08-30 15:13:23,019 | INFO     | exeerrordiag: 
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | exitcode: 0
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | exitmsg: OK
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | cpuconsumptiontime: 837 s
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | nevents: 2
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | neventsw: 0
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | pid: 9553
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | pgrp: 9553
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | corecount: 1
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | event service: False
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | sizes: {0: 2490277, 1: 2490305, 11: 2490451, 22: 2490479, 33: 2490507, 43: 2490535, 54: 2490691, 65: 2490719, 76: 2490747, 86: 2490803, 94: 2490891, 97: 2491199, 9
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | --------------------------------------------------
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | 
[2023-08-30 17:13:45] 2023-08-30 15:13:23,020 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2023-08-30 17:13:45] 2023-08-30 15:13:23,050 | INFO     | queue jobs had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,051 | INFO     | queue payloads had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,052 | INFO     | queue data_in had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,052 | INFO     | queue data_out had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,052 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,052 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,052 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,053 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,053 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,053 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,054 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,054 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,055 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,055 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,056 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,056 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,057 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,057 | INFO     | queue completed_jobids has 1 job(s)
[2023-08-30 17:13:45] 2023-08-30 15:13:23,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,059 | INFO     | queue messages had 0 job(s) [purged]
[2023-08-30 17:13:45] 2023-08-30 15:13:23,059 | INFO     | job 5947362351 has completed (purged errors)
[2023-08-30 17:13:45] 2023-08-30 15:13:23,060 | INFO     | overall cleanup function is called
[2023-08-30 17:13:45] 2023-08-30 15:13:24,068 | INFO     | --- collectZombieJob: --- 10, [9553]
[2023-08-30 17:13:45] 2023-08-30 15:13:24,068 | INFO     | zombie collector trying to kill pid 9553
[2023-08-30 17:13:45] 2023-08-30 15:13:24,069 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-08-30 17:13:45] 2023-08-30 15:13:25,077 | INFO     | collected zombie processes
[2023-08-30 17:13:45] 2023-08-30 15:13:25,078 | INFO     | will now attempt to kill all subprocesses of pid=9553
[2023-08-30 17:13:45] 2023-08-30 15:13:25,162 | INFO     | process IDs to be killed: [9553] (in reverse order)
[2023-08-30 17:13:45] 2023-08-30 15:13:25,191 | WARNING  | found no corresponding commands to process id(s)
[2023-08-30 17:13:45] 2023-08-30 15:13:25,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-08-30 17:13:45] 2023-08-30 15:13:25,192 | INFO     | ready for new job
[2023-08-30 17:13:45] 2023-08-30 15:13:25,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-08-30 17:13:45] 2023-08-30 15:13:25,193 | INFO     | *************************************
[2023-08-30 17:13:45] 2023-08-30 15:13:25,193 | INFO     | ***  PanDA Pilot version 3.6.4.7  ***
[2023-08-30 17:13:45] 2023-08-30 15:13:25,193 | INFO     | *************************************
[2023-08-30 17:13:45] 2023-08-30 15:13:25,193 | INFO     | 
[2023-08-30 17:13:45] 2023-08-30 15:13:25,193 | INFO     | pilot is running in a VM
[2023-08-30 17:13:45] 2023-08-30 15:13:25,193 | INFO     | architecture information:
[2023-08-30 17:13:45] 2023-08-30 15:13:25,194 | INFO     | executing command: cat /etc/os-release
[2023-08-30 17:13:45] 2023-08-30 15:13:25,211 | INFO     | cat /etc/os-release:
[2023-08-30 17:13:45] NAME="CentOS Linux"
[2023-08-30 17:13:45] VERSION="7 (Core)"
[2023-08-30 17:13:45] ID="centos"
[2023-08-30 17:13:45] ID_LIKE="rhel fedora"
[2023-08-30 17:13:45] VERSION_ID="7"
[2023-08-30 17:13:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-08-30 17:13:45] ANSI_COLOR="0;31"
[2023-08-30 17:13:45] CPE_NAME="cpe:/o:centos:centos:7"
[2023-08-30 17:13:45] HOME_URL="https://www.centos.org/"
[2023-08-30 17:13:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-08-30 17:13:45] 
[2023-08-30 17:13:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-08-30 17:13:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-08-30 17:13:45] REDHAT_SUPPORT_PRODUCT="centos"
[2023-08-30 17:13:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-08-30 17:13:45] 
[2023-08-30 17:13:45] 2023-08-30 15:13:25,211 | INFO     | *************************************
[2023-08-30 17:13:45] 2023-08-30 15:13:25,720 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2023-08-30 17:13:45] 2023-08-30 15:13:25,757 | INFO     | sufficient remaining disk space (10514071552 B)
[2023-08-30 17:13:45] 2023-08-30 15:13:25,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-08-30 17:13:45] 2023-08-30 15:13:25,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-08-30 17:13:45] 2023-08-30 15:13:25,757 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-08-30 17:13:45] 2023-08-30 15:13:25,757 | INFO     | found 0 job(s) in 20 queues
[2023-08-30 17:13:45] 2023-08-30 15:13:25,757 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-08-30 17:13:45] 2023-08-30 15:13:25,757 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-08-30 17:13:45] 2023-08-30 15:13:25,758 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-08-30 17:13:45] 2023-08-30 15:13:25,758 | INFO     | aborting loop
[2023-08-30 17:13:45] 2023-08-30 15:13:25,919 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-08-30 17:13:45] 2023-08-30 15:13:26,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-08-30 17:13:45] 2023-08-30 15:13:26,779 | INFO     | [job] retrieve thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:26,780 | INFO     | [job] job monitor thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:26,874 | INFO     | [job] validate thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,030 | INFO     | [data] copytool_in thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,059 | INFO     | [job] create_data_payload thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,060 | INFO     | [payload] validate_pre thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,060 | INFO     | [payload] execute_payloads thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,127 | INFO     | [payload] control thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,460 | INFO     | [data] control thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,559 | INFO     | [payload] validate_post thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,787 | INFO     | [payload] failed_post thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:27,883 | INFO     | [job] control thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:28,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-08-30 17:13:45] 2023-08-30 15:13:28,108 | INFO     | [data] copytool_out thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:29,095 | INFO     | [job] queue monitor thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:29,938 | INFO     | [data] queue_monitor thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:36,582 | INFO     | job.realtimelogging is not enabled
[2023-08-30 17:13:45] 2023-08-30 15:13:37,583 | INFO     | [payload] run_realtimelog thread has finished
[2023-08-30 17:13:45] 2023-08-30 15:13:39,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140307534878528)>', '<ExcThread(monitor, started 140307119208192)>']
[2023-08-30 17:13:45] 2023-08-30 15:13:39,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-08-30 17:13:45] 2023-08-30 15:13:39,924 | INFO     | [monitor] control thread has ended
[2023-08-30 17:13:45] 2023-08-30 15:13:44,084 | INFO     | end of generic workflow (traces error code: 0)
[2023-08-30 17:13:45] 2023-08-30 15:13:44,084 | INFO     | traces error code: 0
[2023-08-30 17:13:45] 2023-08-30 15:13:44,085 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-08-30 17:13:45] 2023-08-30 15:13:44,216 [wrapper] ==== pilot stdout END ====
[2023-08-30 17:13:45] 2023-08-30 15:13:44,219 [wrapper] ==== wrapper stdout RESUME ====
[2023-08-30 17:13:45] 2023-08-30 15:13:44,223 [wrapper] pilotpid: 1933
[2023-08-30 17:13:45] 2023-08-30 15:13:44,226 [wrapper] Pilot exit status: 0
[2023-08-30 17:13:45] 2023-08-30 15:13:44,242 [wrapper] pandaids: 5947362351
[2023-08-30 17:13:45] 2023-08-30 15:13:44,250 [wrapper] apfmon messages muted
[2023-08-30 17:13:45] 2023-08-30 15:13:44,253 [wrapper] Test setup, not cleaning
[2023-08-30 17:13:45] 2023-08-30 15:13:44,257 [wrapper] ==== wrapper stdout END ====
[2023-08-30 17:13:45] 2023-08-30 15:13:44,261 [wrapper] ==== wrapper stderr END ====
[2023-08-30 17:13:45] 2023-08-30 15:13:44,267 [wrapper] wrapperexiting ec=0, duration=1471
[2023-08-30 17:13:45] 2023-08-30 15:13:44,271 [wrapper] apfmon messages muted
[2023-08-30 17:13:45]  *** Error codes and diagnostics ***
[2023-08-30 17:13:45]     "exeErrorCode": 0,
[2023-08-30 17:13:45]     "exeErrorDiag": "",
[2023-08-30 17:13:45]     "pilotErrorCode": 0,
[2023-08-30 17:13:45]     "pilotErrorDiag": "",
[2023-08-30 17:13:45]  *** Listing of results directory ***
[2023-08-30 17:13:45] insgesamt 43228
[2023-08-30 17:13:45] -rwx------. 1 boinc boinc    27277 30. Aug 16:41 runpilot2-wrapper.sh
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc     4388 30. Aug 16:41 queuedata.json
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc   418016 30. Aug 16:41 pilot3.tar.gz
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc      107 30. Aug 16:49 wrapper_26015_x86_64-pc-linux-gnu
[2023-08-30 17:13:45] -rwxr-xr-x. 1 boinc boinc     7986 30. Aug 16:49 run_atlas
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc      112 30. Aug 16:49 job.xml
[2023-08-30 17:13:45] -rw-r--r--. 2 boinc boinc    17604 30. Aug 16:49 start_atlas.sh
[2023-08-30 17:13:45] drwxrwx--x. 2 boinc boinc       68 30. Aug 16:49 shared
[2023-08-30 17:13:45] -rw-r--r--. 2 boinc boinc   428847 30. Aug 16:49 input.tar.gz
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc     6071 30. Aug 16:49 init_data.xml
[2023-08-30 17:13:45] -rw-r--r--. 2 boinc boinc 36949600 30. Aug 16:49 EVNT.04972714._000039.pool.root.1
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc        0 30. Aug 16:49 boinc_lockfile
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc     2756 30. Aug 16:49 pandaJob.out
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc      461 30. Aug 16:49 setup.sh.local
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc  1390003 30. Aug 16:50 cric_ddmendpoints.json
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc  1027771 30. Aug 16:50 agis_schedconf.cvmfs.json
[2023-08-30 17:13:45] drwx------. 4 boinc boinc     4096 30. Aug 16:51 pilot3
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc  1573629 30. Aug 17:07 output.1.369ed366-e466-4362-8fff-a68733dc497d_92433.pool.root
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc     1017 30. Aug 17:07 memory_monitor_summary.json
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc      533 30. Aug 17:08 boinc_task_state.xml
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc   158807 30. Aug 17:10 369ed366-e466-4362-8fff-a68733dc497d_92433.1.job.log.tgz
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc     8192 30. Aug 17:13 boinc_mmap_file
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc       25 30. Aug 17:13 wrapper_checkpoint.txt
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc     6683 30. Aug 17:13 heartbeat.json
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc     4154 30. Aug 17:13 pilotlog.txt
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc   186031 30. Aug 17:13 369ed366-e466-4362-8fff-a68733dc497d_92433.1.job.log
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc      464 30. Aug 17:13 output.list
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc      748 30. Aug 17:13 runtime_log
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc  1935360 30. Aug 17:13 result.tar.gz
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc    12191 30. Aug 17:13 runtime_log.err
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc      633 30. Aug 17:13 0JzNDmLZbv3n7Olcko1bjSoqABFKDmABFKDm7AsVDmMLQKDmmRJYWm.diag
[2023-08-30 17:13:45] -rw-r--r--. 1 boinc boinc    22840 30. Aug 17:13 stderr.txt
[2023-08-30 17:13:45] HITS file was successfully produced:
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc 1573629 30. Aug 17:07 shared/HITS.pool.root.1
[2023-08-30 17:13:45]  *** Contents of shared directory: ***
[2023-08-30 17:13:45] insgesamt 39956
[2023-08-30 17:13:45] -rw-r--r--. 2 boinc boinc    17604 30. Aug 16:49 start_atlas.sh
[2023-08-30 17:13:45] -rw-r--r--. 2 boinc boinc   428847 30. Aug 16:49 input.tar.gz
[2023-08-30 17:13:45] -rw-r--r--. 2 boinc boinc 36949600 30. Aug 16:49 ATLAS.root_0
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc  1573629 30. Aug 17:07 HITS.pool.root.1
[2023-08-30 17:13:45] -rw-------. 1 boinc boinc  1935360 30. Aug 17:13 result.tar.gz
17:13:46 (31049): run_atlas exited; CPU time 793.671324
17:13:46 (31049): called boinc_finish(0)

</stderr_txt>
]]>

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