Name 1CtLDmlcTw3n7Olcko1bjSoqABFKDmABFKDm7AsVDmDSQKDmMVZkVm_0
Workunit 2329037
Created 2 Sep 2023, 0:25:01 UTC
Sent 2 Sep 2023, 0:25:13 UTC
Report deadline 9 Sep 2023, 0:25:13 UTC
Received 2 Sep 2023, 0:59:23 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1498
Run time 32 min 5 sec
CPU time 3 min 31 sec
Validate state Valid
Credit 22.09
Device peak FLOPS 13.05 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 2.61 GB
Peak swap size 3.11 GB
Peak disk usage 80.90 MB

Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
01:26:18 (2621): wrapper (7.7.26015): starting
01:26:18 (2621): wrapper: running run_atlas (--nthreads 4)
[2023-09-02 01:26:18] Arguments: --nthreads 4
[2023-09-02 01:26:18] Threads: 4
[2023-09-02 01:26:18] Checking for CVMFS
[2023-09-02 01:26:30] Probing /cvmfs/atlas.cern.ch... OK
[2023-09-02 01:26:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-09-02 01:26:35] Running cvmfs_config stat atlas.cern.ch
[2023-09-02 01:26:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-09-02 01:26:35] 2.9.0.0 2843 0 24628 123148 3 1 3433392 4194305 0 130560 0 0 0.000 960 375 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-09-02 01:26:35] CVMFS is ok
[2023-09-02 01:26:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-09-02 01:26:35] Checking for apptainer binary...
[2023-09-02 01:26:35] Using apptainer found in PATH at /usr/bin/apptainer
[2023-09-02 01:26:35] Running /usr/bin/apptainer --version
[2023-09-02 01:26:35] apptainer version 1.0.3
[2023-09-02 01:26:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-09-02 01:26:37] TeeC16
[2023-09-02 01:26:37] apptainer works
[2023-09-02 01:26:37] Set ATHENA_PROC_NUMBER=4
[2023-09-02 01:26:37] Set ATHENA_CORE_NUMBER=4
[2023-09-02 01:26:37] Starting ATLAS job with PandaID=5949955004
[2023-09-02 01:26:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-09-02 01:58:20]  *** The last 200 lines of the pilot log: ***
[2023-09-02 01:58:20] 2023-09-02 00:57:32,327 | INFO     | monitor loop #255: job 0:5949955004 is in state 'stageout'
[2023-09-02 01:58:20] 2023-09-02 00:57:32,371 | INFO     | number of running child processes to parent process 13106: 1
[2023-09-02 01:58:20] 2023-09-02 00:57:32,371 | INFO     | maximum number of monitored processes: 7
[2023-09-02 01:58:20] 2023-09-02 00:57:34,874 | INFO     | monitor loop #256: job 0:5949955004 is in state 'stageout'
[2023-09-02 01:58:20] 2023-09-02 00:57:34,875 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 717100 B
[2023-09-02 01:58:20] 2023-09-02 00:57:34,875 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 9088 B
[2023-09-02 01:58:20] 2023-09-02 00:57:34,875 | INFO     | executing command: df -mP /home/m/BOINC/slots/0
[2023-09-02 01:58:20] 2023-09-02 00:57:34,890 | INFO     | sufficient remaining disk space (424707883008 B)
[2023-09-02 01:58:20] 2023-09-02 00:57:34,890 | INFO     | work directory size check will use 61362667520 B as a max limit (10% grace limit added)
[2023-09-02 01:58:20] 2023-09-02 00:57:34,891 | INFO     | size of work directory /home/m/BOINC/slots/0/PanDA_Pilot-5949955004: 1091045 B (within 61362667520 B limit)
[2023-09-02 01:58:20] 2023-09-02 00:57:34,891 | INFO     | pfn file=/home/m/BOINC/slots/0/PanDA_Pilot-5949955004/output.1.7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.pool.root does not exist (skip from workdir size calculat
[2023-09-02 01:58:20] 2023-09-02 00:57:34,891 | INFO     | total size of present files: 0 B (workdir size: 1091045 B)
[2023-09-02 01:58:20] 2023-09-02 00:57:34,891 | INFO     | output file size check: skipping output file /home/m/BOINC/slots/0/PanDA_Pilot-5949955004/output.1.7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.pool.root since it do
[2023-09-02 01:58:20] 2023-09-02 00:57:34,932 | INFO     | number of running child processes to parent process 13106: 1
[2023-09-02 01:58:20] 2023-09-02 00:57:34,933 | INFO     | maximum number of monitored processes: 7
[2023-09-02 01:58:20] 2023-09-02 00:57:37,436 | INFO     | monitor loop #257: job 0:5949955004 is in state 'stageout'
[2023-09-02 01:58:20] 2023-09-02 00:57:37,481 | INFO     | number of running child processes to parent process 13106: 1
[2023-09-02 01:58:20] 2023-09-02 00:57:37,481 | INFO     | maximum number of monitored processes: 7
[2023-09-02 01:58:20] 2023-09-02 00:57:39,984 | INFO     | monitor loop #258: job 0:5949955004 is in state 'stageout'
[2023-09-02 01:58:20] 2023-09-02 00:57:40,022 | INFO     | number of running child processes to parent process 13106: 1
[2023-09-02 01:58:20] 2023-09-02 00:57:40,023 | INFO     | maximum number of monitored processes: 7
[2023-09-02 01:58:20] 2023-09-02 00:57:42,526 | INFO     | monitor loop #259: job 0:5949955004 is in state 'stageout'
[2023-09-02 01:58:20] 2023-09-02 00:57:42,570 | INFO     | number of running child processes to parent process 13106: 1
[2023-09-02 01:58:20] 2023-09-02 00:57:42,570 | INFO     | maximum number of monitored processes: 7
[2023-09-02 01:58:20] 2023-09-02 00:57:45,073 | INFO     | monitor loop #260: job 0:5949955004 is in state 'stageout'
[2023-09-02 01:58:20] 2023-09-02 00:57:45,116 | INFO     | number of running child processes to parent process 13106: 1
[2023-09-02 01:58:20] 2023-09-02 00:57:45,116 | INFO     | maximum number of monitored processes: 7
[2023-09-02 01:58:20] 2023-09-02 00:57:46,826 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-09-02 01:58:20] 2023-09-02 00:57:46,965 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-09-02 01:58:20] 2023-09-02 00:57:46,965 | WARNING  | cache file=/home/m/BOINC/slots/0/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/0/agis_ddmendpoints.ag
[2023-09-02 01:58:20] 2023-09-02 00:57:47,014 | INFO     | transferring file 7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.1.job.log.tgz from /home/m/BOINC/slots/0/PanDA_Pilot-5949955004/7379f03f-b8ab-4838-afd5-354ee8f3cd62_7
[2023-09-02 01:58:20] 2023-09-02 00:57:47,014 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/0/PanDA_Pilot-5949955004/7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.1.job.log.tgz /home/m/BOINC/slots/0/7379
[2023-09-02 01:58:20] 2023-09-02 00:57:47,033 | INFO     | Adding to output.list: 7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/e3/fd/7379f03f-b8ab-
[2023-09-02 01:58:20] 2023-09-02 00:57:47,034 | INFO     | summary of transferred files:
[2023-09-02 01:58:20] 2023-09-02 00:57:47,034 | INFO     |  -- lfn=7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.1.job.log.tgz, status_code=0, status=transferred
[2023-09-02 01:58:20] 2023-09-02 00:57:47,035 | INFO     | stage-out finished correctly
[2023-09-02 01:58:20] 2023-09-02 00:57:47,619 | INFO     | monitor loop #261: job 0:5949955004 is in state 'finished'
[2023-09-02 01:58:20] 2023-09-02 00:57:47,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-02 01:58:20] 2023-09-02 00:57:49,051 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-09-02 01:58:20] 2023-09-02 00:57:49,606 | INFO     | job 5949955004 has state=finished
[2023-09-02 01:58:20] 2023-09-02 00:57:49,606 | INFO     | preparing for final server update for job 5949955004 in state='finished'
[2023-09-02 01:58:20] 2023-09-02 00:57:49,607 | INFO     | this job has now completed (state=finished)
[2023-09-02 01:58:20] 2023-09-02 00:57:49,607 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-09-02 01:58:20] 2023-09-02 00:57:49,607 | INFO     | job 5949955004 has finished - writing final server update
[2023-09-02 01:58:20] 2023-09-02 00:57:49,608 | INFO     | fitting pss+swap vs Time
[2023-09-02 01:58:20] 2023-09-02 00:57:49,609 | INFO     | current memory leak: 2587.30 B/s (using 13 data points, chi2=0.21)
[2023-09-02 01:58:20] 2023-09-02 00:57:49,610 | INFO     | total number of processed events: 2 (read)
[2023-09-02 01:58:20] 2023-09-02 00:57:49,628 | INFO     | executing command: lscpu
[2023-09-02 01:58:20] 2023-09-02 00:57:49,648 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-09-02 01:58:20] 2023-09-02 00:57:49,648 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-09-02 01:58:20] 2023-09-02 00:57:49,674 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-09-02 01:58:20] 2023-09-02 00:57:50,122 | INFO     | monitor loop #262: job 0:5949955004 is in state 'finished'
[2023-09-02 01:58:20] 2023-09-02 00:57:50,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-02 01:58:20] 2023-09-02 00:57:52,625 | INFO     | monitor loop #263: job 0:5949955004 is in state 'finished'
[2023-09-02 01:58:20] 2023-09-02 00:57:52,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-02 01:58:20] 2023-09-02 00:57:55,127 | INFO     | monitor loop #264: job 0:5949955004 is in state 'finished'
[2023-09-02 01:58:20] 2023-09-02 00:57:55,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-02 01:58:20] 2023-09-02 00:57:57,635 | INFO     | monitor loop #265: job 0:5949955004 is in state 'finished'
[2023-09-02 01:58:20] 2023-09-02 00:57:57,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-02 01:58:20] 2023-09-02 00:57:59,455 | INFO     | CPU arch script returned: x86-64-v2
[2023-09-02 01:58:20] 2023-09-02 00:57:59,455 | INFO     | using path: /home/m/BOINC/slots/0/PanDA_Pilot-5949955004/memory_monitor_summary.json (trf name=prmon)
[2023-09-02 01:58:20] 2023-09-02 00:57:59,456 | INFO     | extracted standard info from prmon json
[2023-09-02 01:58:20] 2023-09-02 00:57:59,456 | INFO     | extracted standard memory fields from prmon json
[2023-09-02 01:58:20] 2023-09-02 00:57:59,456 | INFO     | ..............................
[2023-09-02 01:58:20] 2023-09-02 00:57:59,456 | INFO     | . Timing measurements:
[2023-09-02 01:58:20] 2023-09-02 00:57:59,456 | INFO     | . get job = 61 s
[2023-09-02 01:58:20] 2023-09-02 00:57:59,457 | INFO     | . initial setup = 63 s
[2023-09-02 01:58:20] 2023-09-02 00:57:59,457 | INFO     | . payload setup = 32 s
[2023-09-02 01:58:20] 2023-09-02 00:57:59,457 | INFO     | . stage-in = 73 s
[2023-09-02 01:58:20] 2023-09-02 00:57:59,457 | INFO     | . payload execution = 1166 s
[2023-09-02 01:58:20] 2023-09-02 00:57:59,457 | INFO     | . stage-out = 394 s
[2023-09-02 01:58:20] 2023-09-02 00:57:59,457 | INFO     | ..............................
[2023-09-02 01:58:20] 2023-09-02 00:57:59,639 | INFO     | 
[2023-09-02 01:58:20] 2023-09-02 00:57:59,639 | INFO     | job summary report
[2023-09-02 01:58:20] 2023-09-02 00:57:59,639 | INFO     | --------------------------------------------------
[2023-09-02 01:58:20] 2023-09-02 00:57:59,639 | INFO     | PanDA job id: 5949955004
[2023-09-02 01:58:20] 2023-09-02 00:57:59,640 | INFO     | task id: NULL
[2023-09-02 01:58:20] 2023-09-02 00:57:59,640 | INFO     | errors: (none)
[2023-09-02 01:58:20] 2023-09-02 00:57:59,640 | INFO     | status: LOG_TRANSFER = DONE 
[2023-09-02 01:58:20] 2023-09-02 00:57:59,640 | INFO     | pilot state: finished 
[2023-09-02 01:58:20] 2023-09-02 00:57:59,640 | INFO     | transexitcode: 0
[2023-09-02 01:58:20] 2023-09-02 00:57:59,640 | INFO     | exeerrorcode: 0
[2023-09-02 01:58:20] 2023-09-02 00:57:59,640 | INFO     | exeerrordiag: 
[2023-09-02 01:58:20] 2023-09-02 00:57:59,640 | INFO     | exitcode: 0
[2023-09-02 01:58:20] 2023-09-02 00:57:59,641 | INFO     | exitmsg: OK
[2023-09-02 01:58:20] 2023-09-02 00:57:59,641 | INFO     | cpuconsumptiontime: 228 s
[2023-09-02 01:58:20] 2023-09-02 00:57:59,641 | INFO     | nevents: 2
[2023-09-02 01:58:20] 2023-09-02 00:57:59,641 | INFO     | neventsw: 0
[2023-09-02 01:58:20] 2023-09-02 00:57:59,641 | INFO     | pid: 13106
[2023-09-02 01:58:20] 2023-09-02 00:57:59,641 | INFO     | pgrp: 13106
[2023-09-02 01:58:20] 2023-09-02 00:57:59,641 | INFO     | corecount: 4
[2023-09-02 01:58:20] 2023-09-02 00:57:59,642 | INFO     | event service: False
[2023-09-02 01:58:20] 2023-09-02 00:57:59,642 | INFO     | sizes: {0: 2490109, 11: 2490255, 22: 2490283, 32: 2490311, 43: 2490339, 53: 2490367, 64: 2490523, 75: 2490579, 79: 2490667, 85: 2490723, 1202: 2512754, 1596: 25220
[2023-09-02 01:58:20] 2023-09-02 00:57:59,642 | INFO     | --------------------------------------------------
[2023-09-02 01:58:20] 2023-09-02 00:57:59,642 | INFO     | 
[2023-09-02 01:58:20] 2023-09-02 00:57:59,642 | INFO     | executing command: ls -lF /home/m/BOINC/slots/0
[2023-09-02 01:58:20] 2023-09-02 00:57:59,665 | INFO     | queue jobs had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,665 | INFO     | queue payloads had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,665 | INFO     | queue data_in had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,665 | INFO     | queue data_out had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,666 | INFO     | queue completed_jobids has 1 job(s)
[2023-09-02 01:58:20] 2023-09-02 00:57:59,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,667 | INFO     | queue messages had 0 job(s) [purged]
[2023-09-02 01:58:20] 2023-09-02 00:57:59,667 | INFO     | job 5949955004 has completed (purged errors)
[2023-09-02 01:58:20] 2023-09-02 00:57:59,667 | INFO     | overall cleanup function is called
[2023-09-02 01:58:20] 2023-09-02 00:58:00,674 | INFO     | --- collectZombieJob: --- 10, [13106]
[2023-09-02 01:58:20] 2023-09-02 00:58:00,675 | INFO     | zombie collector trying to kill pid 13106
[2023-09-02 01:58:20] 2023-09-02 00:58:00,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-09-02 01:58:20] 2023-09-02 00:58:01,680 | INFO     | collected zombie processes
[2023-09-02 01:58:20] 2023-09-02 00:58:01,680 | INFO     | will now attempt to kill all subprocesses of pid=13106
[2023-09-02 01:58:20] 2023-09-02 00:58:01,724 | INFO     | process IDs to be killed: [13106] (in reverse order)
[2023-09-02 01:58:20] 2023-09-02 00:58:01,760 | WARNING  | found no corresponding commands to process id(s)
[2023-09-02 01:58:20] 2023-09-02 00:58:01,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-09-02 01:58:20] 2023-09-02 00:58:01,760 | INFO     | ready for new job
[2023-09-02 01:58:20] 2023-09-02 00:58:01,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-09-02 01:58:20] 2023-09-02 00:58:01,761 | INFO     | *************************************
[2023-09-02 01:58:20] 2023-09-02 00:58:01,761 | INFO     | ***  PanDA Pilot version 3.6.4.7  ***
[2023-09-02 01:58:20] 2023-09-02 00:58:01,761 | INFO     | *************************************
[2023-09-02 01:58:20] 2023-09-02 00:58:01,761 | INFO     | 
[2023-09-02 01:58:20] 2023-09-02 00:58:01,779 | INFO     | architecture information:
[2023-09-02 01:58:20] 2023-09-02 00:58:01,779 | INFO     | executing command: cat /etc/os-release
[2023-09-02 01:58:20] 2023-09-02 00:58:01,790 | INFO     | cat /etc/os-release:
[2023-09-02 01:58:20] NAME="CentOS Linux"
[2023-09-02 01:58:20] VERSION="7 (Core)"
[2023-09-02 01:58:20] ID="centos"
[2023-09-02 01:58:20] ID_LIKE="rhel fedora"
[2023-09-02 01:58:20] VERSION_ID="7"
[2023-09-02 01:58:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-09-02 01:58:20] ANSI_COLOR="0;31"
[2023-09-02 01:58:20] CPE_NAME="cpe:/o:centos:centos:7"
[2023-09-02 01:58:20] HOME_URL="https://www.centos.org/"
[2023-09-02 01:58:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-09-02 01:58:20] 
[2023-09-02 01:58:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-09-02 01:58:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-09-02 01:58:20] REDHAT_SUPPORT_PRODUCT="centos"
[2023-09-02 01:58:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-09-02 01:58:20] 
[2023-09-02 01:58:20] 2023-09-02 00:58:01,790 | INFO     | *************************************
[2023-09-02 01:58:20] 2023-09-02 00:58:02,293 | INFO     | executing command: df -mP /home/m/BOINC/slots/0
[2023-09-02 01:58:20] 2023-09-02 00:58:02,311 | INFO     | sufficient remaining disk space (424708931584 B)
[2023-09-02 01:58:20] 2023-09-02 00:58:02,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-09-02 01:58:20] 2023-09-02 00:58:02,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-09-02 01:58:20] 2023-09-02 00:58:02,312 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-09-02 01:58:20] 2023-09-02 00:58:02,312 | INFO     | found 0 job(s) in 20 queues
[2023-09-02 01:58:20] 2023-09-02 00:58:02,312 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-09-02 01:58:20] 2023-09-02 00:58:02,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-09-02 01:58:20] 2023-09-02 00:58:02,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-09-02 01:58:20] 2023-09-02 00:58:02,646 | WARNING  | job monitor detected an abort_job request (signal=None)
[2023-09-02 01:58:20] 2023-09-02 00:58:02,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-09-02 01:58:20] 2023-09-02 00:58:02,646 | INFO     | will abort loop
[2023-09-02 01:58:20] 2023-09-02 00:58:03,317 | INFO     | [job] retrieve thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:03,635 | INFO     | [payload] control thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:03,652 | INFO     | [job] job monitor thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:03,667 | INFO     | [job] control thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:03,728 | INFO     | [job] validate thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:03,778 | INFO     | [payload] failed_post thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:03,845 | INFO     | [payload] execute_payloads thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:03,917 | INFO     | [job] create_data_payload thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:03,980 | INFO     | [payload] validate_pre thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:04,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-09-02 01:58:20] 2023-09-02 00:58:04,171 | INFO     | [data] control thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:04,179 | INFO     | [data] copytool_in thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:04,351 | INFO     | [payload] validate_post thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:04,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-09-02 01:58:20] 2023-09-02 00:58:04,625 | INFO     | [data] copytool_out thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:05,535 | INFO     | [job] queue monitor thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:08,131 | INFO     | [data] queue_monitor thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:13,261 | INFO     | job.realtimelogging is not enabled
[2023-09-02 01:58:20] 2023-09-02 00:58:14,266 | INFO     | [payload] run_realtimelog thread has finished
[2023-09-02 01:58:20] 2023-09-02 00:58:15,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166757852992)>', '<ExcThread(monitor, started 140166115092224)>']
[2023-09-02 01:58:20] 2023-09-02 00:58:15,378 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-09-02 01:58:20] 2023-09-02 00:58:15,378 | INFO     | [monitor] control thread has ended
[2023-09-02 01:58:20] 2023-09-02 00:58:20,269 | INFO     | end of generic workflow (traces error code: 0)
[2023-09-02 01:58:20] 2023-09-02 00:58:20,270 | INFO     | traces error code: 0
[2023-09-02 01:58:20] 2023-09-02 00:58:20,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-09-02 01:58:20] 2023-09-02 00:58:20,323 [wrapper] ==== pilot stdout END ====
[2023-09-02 01:58:20] 2023-09-02 00:58:20,326 [wrapper] ==== wrapper stdout RESUME ====
[2023-09-02 01:58:20] 2023-09-02 00:58:20,330 [wrapper] pilotpid: 6401
[2023-09-02 01:58:20] 2023-09-02 00:58:20,334 [wrapper] Pilot exit status: 0
[2023-09-02 01:58:20] 2023-09-02 00:58:20,344 [wrapper] pandaids: 5949955004
[2023-09-02 01:58:20] 2023-09-02 00:58:20,351 [wrapper] apfmon messages muted
[2023-09-02 01:58:20] 2023-09-02 00:58:20,355 [wrapper] Test setup, not cleaning
[2023-09-02 01:58:20] 2023-09-02 00:58:20,358 [wrapper] ==== wrapper stdout END ====
[2023-09-02 01:58:20] 2023-09-02 00:58:20,362 [wrapper] ==== wrapper stderr END ====
[2023-09-02 01:58:20] 2023-09-02 00:58:20,371 [wrapper] wrapperexiting ec=0, duration=1903
[2023-09-02 01:58:20] 2023-09-02 00:58:20,376 [wrapper] apfmon messages muted
[2023-09-02 01:58:20]  *** Error codes and diagnostics ***
[2023-09-02 01:58:20]     "exeErrorCode": 0,
[2023-09-02 01:58:20]     "exeErrorDiag": "",
[2023-09-02 01:58:20]     "pilotErrorCode": 0,
[2023-09-02 01:58:20]     "pilotErrorDiag": "",
[2023-09-02 01:58:20]  *** Listing of results directory ***
[2023-09-02 01:58:20] total 44752
[2023-09-02 01:58:20] -rw-r--r-- 1 m m   418016 Sep  2 00:32 pilot3.tar.gz
[2023-09-02 01:58:20] -rwx------ 1 m m    27277 Sep  2 01:24 runpilot2-wrapper.sh
[2023-09-02 01:58:20] -rw-r--r-- 1 m m     4388 Sep  2 01:24 queuedata.json
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m      107 Sep  2 01:26 wrapper_26015_x86_64-pc-linux-gnu
[2023-09-02 01:58:20] -rwxr-xr-x 1 m m     7986 Sep  2 01:26 run_atlas
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m      112 Sep  2 01:26 job.xml
[2023-09-02 01:58:20] -rw-r--r-- 2 m m    17604 Sep  2 01:26 start_atlas.sh
[2023-09-02 01:58:20] drwxrwx--x 2 m m     4096 Sep  2 01:26 shared
[2023-09-02 01:58:20] -rw-r--r-- 2 m m   428816 Sep  2 01:26 input.tar.gz
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m     5755 Sep  2 01:26 init_data.xml
[2023-09-02 01:58:20] -rw-r--r-- 2 m m 37620382 Sep  2 01:26 EVNT.04972714._000038.pool.root.1
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m        0 Sep  2 01:26 boinc_lockfile
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m     2681 Sep  2 01:26 pandaJob.out
[2023-09-02 01:58:20] -rw------- 1 m m      424 Sep  2 01:26 setup.sh.local
[2023-09-02 01:58:20] -rw------- 1 m m  1390011 Sep  2 01:28 cric_ddmendpoints.json
[2023-09-02 01:58:20] -rw------- 1 m m  1028014 Sep  2 01:28 agis_schedconf.cvmfs.json
[2023-09-02 01:58:20] drwx------ 4 m m     4096 Sep  2 01:29 pilot3
[2023-09-02 01:58:20] -rw------- 1 m m  1942423 Sep  2 01:51 output.1.7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.pool.root
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m      533 Sep  2 01:51 boinc_task_state.xml
[2023-09-02 01:58:20] -rw------- 1 m m     1024 Sep  2 01:51 memory_monitor_summary.json
[2023-09-02 01:58:20] -rw------- 1 m m   181640 Sep  2 01:54 7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.1.job.log.tgz
[2023-09-02 01:58:20] -rw------- 1 m m     7085 Sep  2 01:57 heartbeat.json
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m     8192 Sep  2 01:58 boinc_mmap_file
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m       25 Sep  2 01:58 wrapper_checkpoint.txt
[2023-09-02 01:58:20] -rw------- 1 m m     4187 Sep  2 01:58 pilotlog.txt
[2023-09-02 01:58:20] -rw------- 1 m m   235121 Sep  2 01:58 7379f03f-b8ab-4838-afd5-354ee8f3cd62_73045.1.job.log
[2023-09-02 01:58:20] -rw------- 1 m m      464 Sep  2 01:58 output.list
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m      748 Sep  2 01:58 runtime_log
[2023-09-02 01:58:20] -rw------- 1 m m  2375680 Sep  2 01:58 result.tar.gz
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m    11905 Sep  2 01:58 runtime_log.err
[2023-09-02 01:58:20] -rw------- 1 m m      626 Sep  2 01:58 1CtLDmlcTw3n7Olcko1bjSoqABFKDmABFKDm7AsVDmDSQKDmMVZkVm.diag
[2023-09-02 01:58:20] -rw-rw-r-- 1 m m    22869 Sep  2 01:58 stderr.txt
[2023-09-02 01:58:20] HITS file was successfully produced:
[2023-09-02 01:58:20] -rw------- 1 m m 1942423 Sep  2 01:51 shared/HITS.pool.root.1
[2023-09-02 01:58:20]  *** Contents of shared directory: ***
[2023-09-02 01:58:20] total 41400
[2023-09-02 01:58:20] -rw-r--r-- 2 m m    17604 Sep  2 01:26 start_atlas.sh
[2023-09-02 01:58:20] -rw-r--r-- 2 m m   428816 Sep  2 01:26 input.tar.gz
[2023-09-02 01:58:20] -rw-r--r-- 2 m m 37620382 Sep  2 01:26 ATLAS.root_0
[2023-09-02 01:58:20] -rw------- 1 m m  1942423 Sep  2 01:51 HITS.pool.root.1
[2023-09-02 01:58:20] -rw------- 1 m m  2375680 Sep  2 01:58 result.tar.gz
01:58:22 (2621): run_atlas exited; CPU time 211.427027
01:58:22 (2621): called boinc_finish(0)

</stderr_txt>
]]>


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