Name rCgNDm3YCx3n7Olcko1bjSoqABFKDmABFKDm7AsVDmiaQKDm1y30Zn_0
Workunit 2329552
Created 4 Sep 2023, 0:24:09 UTC
Sent 4 Sep 2023, 0:25:11 UTC
Report deadline 11 Sep 2023, 0:25:11 UTC
Received 4 Sep 2023, 1:02:45 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1498
Run time 35 min 8 sec
CPU time 8 min 13 sec
Validate state Valid
Credit 25.96
Device peak FLOPS 13.05 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.50 GB
Peak swap size 2.12 GB
Peak disk usage 79.95 MB

Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
01:26:17 (2607): wrapper (7.7.26015): starting
01:26:17 (2607): wrapper: running run_atlas (--nthreads 4)
[2023-09-04 01:26:17] Arguments: --nthreads 4
[2023-09-04 01:26:17] Threads: 4
[2023-09-04 01:26:17] Checking for CVMFS
[2023-09-04 01:26:22] Probing /cvmfs/atlas.cern.ch... OK
[2023-09-04 01:26:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-09-04 01:26:28] Running cvmfs_config stat atlas.cern.ch
[2023-09-04 01:26:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-09-04 01:26:28] 2.9.0.0 2829 0 24628 123178 3 1 2981629 4194304 0 130560 0 0 0.000 960 545 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-09-04 01:26:28] CVMFS is ok
[2023-09-04 01:26:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-09-04 01:26:28] Checking for apptainer binary...
[2023-09-04 01:26:28] Using apptainer found in PATH at /usr/bin/apptainer
[2023-09-04 01:26:28] Running /usr/bin/apptainer --version
[2023-09-04 01:26:29] apptainer version 1.0.3
[2023-09-04 01:26:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-09-04 01:26:30] TeeC16
[2023-09-04 01:26:30] apptainer works
[2023-09-04 01:26:30] Set ATHENA_PROC_NUMBER=4
[2023-09-04 01:26:30] Set ATHENA_CORE_NUMBER=4
[2023-09-04 01:26:30] Starting ATLAS job with PandaID=5951245359
[2023-09-04 01:26:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-09-04 02:01:21]  *** The last 200 lines of the pilot log: ***
[2023-09-04 02:01:21] 2023-09-04 01:00:29,288 | INFO     | size of work directory /home/m/BOINC/slots/0/PanDA_Pilot-5951245359: 1129512 B (within 61362667520 B limit)
[2023-09-04 02:01:21] 2023-09-04 01:00:29,288 | INFO     | pfn file=/home/m/BOINC/slots/0/PanDA_Pilot-5951245359/output.1.f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.pool.root does not exist (skip from workdir size calculat
[2023-09-04 02:01:21] 2023-09-04 01:00:29,289 | INFO     | total size of present files: 0 B (workdir size: 1129512 B)
[2023-09-04 02:01:21] 2023-09-04 01:00:29,289 | INFO     | output file size check: skipping output file /home/m/BOINC/slots/0/PanDA_Pilot-5951245359/output.1.f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.pool.root since it do
[2023-09-04 02:01:21] 2023-09-04 01:00:29,326 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:29,326 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:31,829 | INFO     | monitor loop #263: job 0:5951245359 is in state 'stageout'
[2023-09-04 02:01:21] 2023-09-04 01:00:31,873 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:31,874 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:34,377 | INFO     | monitor loop #264: job 0:5951245359 is in state 'stageout'
[2023-09-04 02:01:21] 2023-09-04 01:00:34,419 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:34,419 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:36,922 | INFO     | monitor loop #265: job 0:5951245359 is in state 'stageout'
[2023-09-04 02:01:21] 2023-09-04 01:00:36,964 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:36,964 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:39,468 | INFO     | monitor loop #266: job 0:5951245359 is in state 'stageout'
[2023-09-04 02:01:21] 2023-09-04 01:00:39,502 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:39,502 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:42,005 | INFO     | monitor loop #267: job 0:5951245359 is in state 'stageout'
[2023-09-04 02:01:21] 2023-09-04 01:00:42,047 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:42,047 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:44,550 | INFO     | monitor loop #268: job 0:5951245359 is in state 'stageout'
[2023-09-04 02:01:21] 2023-09-04 01:00:44,586 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:44,586 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:47,089 | INFO     | monitor loop #269: job 0:5951245359 is in state 'stageout'
[2023-09-04 02:01:21] 2023-09-04 01:00:47,132 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:47,133 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:49,610 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-09-04 02:01:21] 2023-09-04 01:00:49,636 | INFO     | monitor loop #270: job 0:5951245359 is in state 'stageout'
[2023-09-04 02:01:21] 2023-09-04 01:00:49,677 | INFO     | number of running child processes to parent process 13783: 1
[2023-09-04 02:01:21] 2023-09-04 01:00:49,678 | INFO     | maximum number of monitored processes: 7
[2023-09-04 02:01:21] 2023-09-04 01:00:49,767 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-09-04 02:01:21] 2023-09-04 01:00:49,767 | WARNING  | cache file=/home/m/BOINC/slots/0/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/0/agis_ddmendpoints.ag
[2023-09-04 02:01:21] 2023-09-04 01:00:49,816 | INFO     | transferring file f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.1.job.log.tgz from /home/m/BOINC/slots/0/PanDA_Pilot-5951245359/f4154dea-d62c-4c6c-a884-a4c140d3e9a0_7
[2023-09-04 02:01:21] 2023-09-04 01:00:49,816 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/0/PanDA_Pilot-5951245359/f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.1.job.log.tgz /home/m/BOINC/slots/0/f415
[2023-09-04 02:01:21] 2023-09-04 01:00:49,838 | INFO     | Adding to output.list: f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/3f/2c/f4154dea-d62c-
[2023-09-04 02:01:21] 2023-09-04 01:00:49,839 | INFO     | summary of transferred files:
[2023-09-04 02:01:21] 2023-09-04 01:00:49,839 | INFO     |  -- lfn=f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.1.job.log.tgz, status_code=0, status=transferred
[2023-09-04 02:01:21] 2023-09-04 01:00:49,839 | INFO     | stage-out finished correctly
[2023-09-04 02:01:21] 2023-09-04 01:00:49,910 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-09-04 02:01:21] 2023-09-04 01:00:51,118 | INFO     | job 5951245359 has state=finished
[2023-09-04 02:01:21] 2023-09-04 01:00:51,119 | INFO     | preparing for final server update for job 5951245359 in state='finished'
[2023-09-04 02:01:21] 2023-09-04 01:00:51,119 | INFO     | this job has now completed (state=finished)
[2023-09-04 02:01:21] 2023-09-04 01:00:51,119 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-09-04 02:01:21] 2023-09-04 01:00:51,119 | INFO     | job 5951245359 has finished - writing final server update
[2023-09-04 02:01:21] 2023-09-04 01:00:51,121 | INFO     | fitting pss+swap vs Time
[2023-09-04 02:01:21] 2023-09-04 01:00:51,121 | INFO     | current memory leak: 1910.85 B/s (using 15 data points, chi2=0.90)
[2023-09-04 02:01:21] 2023-09-04 01:00:51,122 | INFO     | total number of processed events: 2 (read)
[2023-09-04 02:01:21] 2023-09-04 01:00:51,142 | INFO     | executing command: lscpu
[2023-09-04 02:01:21] 2023-09-04 01:00:51,162 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-09-04 02:01:21] 2023-09-04 01:00:51,163 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-09-04 02:01:21] 2023-09-04 01:00:51,192 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-09-04 02:01:21] 2023-09-04 01:00:52,181 | INFO     | monitor loop #271: job 0:5951245359 is in state 'finished'
[2023-09-04 02:01:21] 2023-09-04 01:00:52,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:01:21] 2023-09-04 01:00:54,685 | INFO     | monitor loop #272: job 0:5951245359 is in state 'finished'
[2023-09-04 02:01:21] 2023-09-04 01:00:54,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:01:21] 2023-09-04 01:00:57,188 | INFO     | monitor loop #273: job 0:5951245359 is in state 'finished'
[2023-09-04 02:01:21] 2023-09-04 01:00:57,189 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:01:21] 2023-09-04 01:00:59,691 | INFO     | monitor loop #274: job 0:5951245359 is in state 'finished'
[2023-09-04 02:01:21] 2023-09-04 01:00:59,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:01:21] 2023-09-04 01:01:01,931 | INFO     | CPU arch script returned: x86-64-v2
[2023-09-04 02:01:21] 2023-09-04 01:01:01,932 | INFO     | using path: /home/m/BOINC/slots/0/PanDA_Pilot-5951245359/memory_monitor_summary.json (trf name=prmon)
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | extracted standard info from prmon json
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | extracted standard memory fields from prmon json
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | ..............................
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | . Timing measurements:
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | . get job = 78 s
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | . initial setup = 73 s
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | . payload setup = 115 s
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | . stage-in = 88 s
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | . payload execution = 1324 s
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | . stage-out = 301 s
[2023-09-04 02:01:21] 2023-09-04 01:01:01,933 | INFO     | ..............................
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | 
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | job summary report
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | --------------------------------------------------
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | PanDA job id: 5951245359
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | task id: NULL
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | errors: (none)
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | status: LOG_TRANSFER = DONE 
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | pilot state: finished 
[2023-09-04 02:01:21] 2023-09-04 01:01:01,995 | INFO     | transexitcode: 0
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | exeerrorcode: 0
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | exeerrordiag: 
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | exitcode: 0
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | exitmsg: OK
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | cpuconsumptiontime: 511 s
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | nevents: 2
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | neventsw: 0
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | pid: 13783
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | pgrp: 13783
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | corecount: 4
[2023-09-04 02:01:21] 2023-09-04 01:01:01,996 | INFO     | event service: False
[2023-09-04 02:01:21] 2023-09-04 01:01:01,997 | INFO     | sizes: {0: 2490278, 11: 2490424, 22: 2490452, 32: 2490480, 43: 2490508, 54: 2490536, 64: 2490692, 75: 2490748, 85: 2490776, 93: 2490864, 96: 2490892, 1442: 2511261
[2023-09-04 02:01:21] 2023-09-04 01:01:01,997 | INFO     | --------------------------------------------------
[2023-09-04 02:01:21] 2023-09-04 01:01:01,997 | INFO     | 
[2023-09-04 02:01:21] 2023-09-04 01:01:01,997 | INFO     | executing command: ls -lF /home/m/BOINC/slots/0
[2023-09-04 02:01:21] 2023-09-04 01:01:02,015 | INFO     | queue jobs had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,016 | INFO     | queue payloads had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,016 | INFO     | queue data_in had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,016 | INFO     | queue data_out had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,016 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,016 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,016 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,017 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,017 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,017 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,017 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,017 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,017 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,017 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,017 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,018 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,018 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,018 | INFO     | queue completed_jobids has 1 job(s)
[2023-09-04 02:01:21] 2023-09-04 01:01:02,018 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,018 | INFO     | queue messages had 0 job(s) [purged]
[2023-09-04 02:01:21] 2023-09-04 01:01:02,018 | INFO     | job 5951245359 has completed (purged errors)
[2023-09-04 02:01:21] 2023-09-04 01:01:02,018 | INFO     | overall cleanup function is called
[2023-09-04 02:01:21] 2023-09-04 01:01:03,025 | INFO     | --- collectZombieJob: --- 10, [13783]
[2023-09-04 02:01:21] 2023-09-04 01:01:03,025 | INFO     | zombie collector trying to kill pid 13783
[2023-09-04 02:01:21] 2023-09-04 01:01:03,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-09-04 02:01:21] 2023-09-04 01:01:04,030 | INFO     | collected zombie processes
[2023-09-04 02:01:21] 2023-09-04 01:01:04,030 | INFO     | will now attempt to kill all subprocesses of pid=13783
[2023-09-04 02:01:21] 2023-09-04 01:01:04,076 | INFO     | process IDs to be killed: [13783] (in reverse order)
[2023-09-04 02:01:21] 2023-09-04 01:01:04,110 | WARNING  | found no corresponding commands to process id(s)
[2023-09-04 02:01:21] 2023-09-04 01:01:04,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-09-04 02:01:21] 2023-09-04 01:01:04,110 | INFO     | ready for new job
[2023-09-04 02:01:21] 2023-09-04 01:01:04,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-09-04 02:01:21] 2023-09-04 01:01:04,111 | INFO     | *************************************
[2023-09-04 02:01:21] 2023-09-04 01:01:04,111 | INFO     | ***  PanDA Pilot version 3.6.4.7  ***
[2023-09-04 02:01:21] 2023-09-04 01:01:04,111 | INFO     | *************************************
[2023-09-04 02:01:21] 2023-09-04 01:01:04,111 | INFO     | 
[2023-09-04 02:01:21] 2023-09-04 01:01:04,129 | INFO     | architecture information:
[2023-09-04 02:01:21] 2023-09-04 01:01:04,130 | INFO     | executing command: cat /etc/os-release
[2023-09-04 02:01:21] 2023-09-04 01:01:04,147 | INFO     | cat /etc/os-release:
[2023-09-04 02:01:21] NAME="CentOS Linux"
[2023-09-04 02:01:21] VERSION="7 (Core)"
[2023-09-04 02:01:21] ID="centos"
[2023-09-04 02:01:21] ID_LIKE="rhel fedora"
[2023-09-04 02:01:21] VERSION_ID="7"
[2023-09-04 02:01:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-09-04 02:01:21] ANSI_COLOR="0;31"
[2023-09-04 02:01:21] CPE_NAME="cpe:/o:centos:centos:7"
[2023-09-04 02:01:21] HOME_URL="https://www.centos.org/"
[2023-09-04 02:01:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-09-04 02:01:21] 
[2023-09-04 02:01:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-09-04 02:01:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-09-04 02:01:21] REDHAT_SUPPORT_PRODUCT="centos"
[2023-09-04 02:01:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-09-04 02:01:21] 
[2023-09-04 02:01:21] 2023-09-04 01:01:04,147 | INFO     | *************************************
[2023-09-04 02:01:21] 2023-09-04 01:01:04,649 | INFO     | executing command: df -mP /home/m/BOINC/slots/0
[2023-09-04 02:01:21] 2023-09-04 01:01:04,667 | INFO     | sufficient remaining disk space (423290208256 B)
[2023-09-04 02:01:21] 2023-09-04 01:01:04,668 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-09-04 02:01:21] 2023-09-04 01:01:04,668 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-09-04 02:01:21] 2023-09-04 01:01:04,704 | WARNING  | job monitor detected an abort_job request (signal=None)
[2023-09-04 02:01:21] 2023-09-04 01:01:04,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-09-04 02:01:21] 2023-09-04 01:01:04,705 | INFO     | will abort loop
[2023-09-04 02:01:21] 2023-09-04 01:01:04,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-09-04 02:01:21] 2023-09-04 01:01:05,271 | INFO     | found 0 job(s) in 20 queues
[2023-09-04 02:01:21] 2023-09-04 01:01:05,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-09-04 02:01:21] 2023-09-04 01:01:05,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-09-04 02:01:21] 2023-09-04 01:01:05,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-09-04 02:01:21] 2023-09-04 01:01:05,673 | INFO     | [job] retrieve thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:05,710 | INFO     | [job] job monitor thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:05,775 | INFO     | [payload] execute_payloads thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:06,028 | INFO     | [data] control thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:06,206 | INFO     | [payload] validate_post thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:06,340 | INFO     | [job] control thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:06,432 | INFO     | [data] copytool_in thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:06,576 | INFO     | [payload] control thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:06,743 | INFO     | [job] validate thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:06,867 | INFO     | [job] create_data_payload thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:06,937 | INFO     | [payload] failed_post thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:07,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-09-04 02:01:21] 2023-09-04 01:01:07,010 | INFO     | [payload] validate_pre thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:07,426 | INFO     | [data] copytool_out thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:08,010 | INFO     | [job] queue monitor thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:08,988 | INFO     | [data] queue_monitor thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:15,264 | INFO     | job.realtimelogging is not enabled
[2023-09-04 02:01:21] 2023-09-04 01:01:16,270 | INFO     | [payload] run_realtimelog thread has finished
[2023-09-04 02:01:21] 2023-09-04 01:01:16,462 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326351386432)>', '<ExcThread(monitor, started 140325574145792)>']
[2023-09-04 02:01:21] 2023-09-04 01:01:17,332 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-09-04 02:01:21] 2023-09-04 01:01:17,333 | INFO     | [monitor] control thread has ended
[2023-09-04 02:01:21] 2023-09-04 01:01:21,487 | INFO     | end of generic workflow (traces error code: 0)
[2023-09-04 02:01:21] 2023-09-04 01:01:21,488 | INFO     | traces error code: 0
[2023-09-04 02:01:21] 2023-09-04 01:01:21,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-09-04 02:01:21] 2023-09-04 01:01:21,542 [wrapper] ==== pilot stdout END ====
[2023-09-04 02:01:21] 2023-09-04 01:01:21,546 [wrapper] ==== wrapper stdout RESUME ====
[2023-09-04 02:01:21] 2023-09-04 01:01:21,549 [wrapper] pilotpid: 6388
[2023-09-04 02:01:21] 2023-09-04 01:01:21,553 [wrapper] Pilot exit status: 0
[2023-09-04 02:01:21] 2023-09-04 01:01:21,566 [wrapper] pandaids: 5951245359
[2023-09-04 02:01:21] 2023-09-04 01:01:21,575 [wrapper] apfmon messages muted
[2023-09-04 02:01:21] 2023-09-04 01:01:21,580 [wrapper] Test setup, not cleaning
[2023-09-04 02:01:21] 2023-09-04 01:01:21,585 [wrapper] ==== wrapper stdout END ====
[2023-09-04 02:01:21] 2023-09-04 01:01:21,590 [wrapper] ==== wrapper stderr END ====
[2023-09-04 02:01:21] 2023-09-04 01:01:21,599 [wrapper] wrapperexiting ec=0, duration=2091
[2023-09-04 02:01:21] 2023-09-04 01:01:21,604 [wrapper] apfmon messages muted
[2023-09-04 02:01:21]  *** Error codes and diagnostics ***
[2023-09-04 02:01:21]     "exeErrorCode": 0,
[2023-09-04 02:01:21]     "exeErrorDiag": "",
[2023-09-04 02:01:21]     "pilotErrorCode": 0,
[2023-09-04 02:01:21]     "pilotErrorDiag": "",
[2023-09-04 02:01:21]  *** Listing of results directory ***
[2023-09-04 02:01:21] total 43800
[2023-09-04 02:01:21] -rw-r--r-- 1 m m   418016 Sep  4 00:42 pilot3.tar.gz
[2023-09-04 02:01:21] -rw-r--r-- 1 m m     4388 Sep  4 01:21 queuedata.json
[2023-09-04 02:01:21] -rwx------ 1 m m    27277 Sep  4 01:24 runpilot2-wrapper.sh
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m      107 Sep  4 01:26 wrapper_26015_x86_64-pc-linux-gnu
[2023-09-04 02:01:21] -rwxr-xr-x 1 m m     7986 Sep  4 01:26 run_atlas
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m      112 Sep  4 01:26 job.xml
[2023-09-04 02:01:21] -rw-r--r-- 2 m m    17604 Sep  4 01:26 start_atlas.sh
[2023-09-04 02:01:21] drwxrwx--x 2 m m     4096 Sep  4 01:26 shared
[2023-09-04 02:01:21] -rw-r--r-- 2 m m   428867 Sep  4 01:26 input.tar.gz
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m     5755 Sep  4 01:26 init_data.xml
[2023-09-04 02:01:21] -rw-r--r-- 2 m m 37738636 Sep  4 01:26 EVNT.04972714._000024.pool.root.1
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m        0 Sep  4 01:26 boinc_lockfile
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m     2752 Sep  4 01:26 pandaJob.out
[2023-09-04 02:01:21] -rw------- 1 m m      424 Sep  4 01:26 setup.sh.local
[2023-09-04 02:01:21] -rw------- 1 m m  1390011 Sep  4 01:28 cric_ddmendpoints.json
[2023-09-04 02:01:21] -rw------- 1 m m  1028038 Sep  4 01:28 agis_schedconf.cvmfs.json
[2023-09-04 02:01:21] drwx------ 4 m m     4096 Sep  4 01:30 pilot3
[2023-09-04 02:01:21] -rw------- 1 m m  1402419 Sep  4 01:55 output.1.f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.pool.root
[2023-09-04 02:01:21] -rw------- 1 m m     1021 Sep  4 01:55 memory_monitor_summary.json
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m      533 Sep  4 01:55 boinc_task_state.xml
[2023-09-04 02:01:21] -rw------- 1 m m   165446 Sep  4 01:58 f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.1.job.log.tgz
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m     8192 Sep  4 02:00 boinc_mmap_file
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m       25 Sep  4 02:00 wrapper_checkpoint.txt
[2023-09-04 02:01:21] -rw------- 1 m m     6671 Sep  4 02:01 heartbeat.json
[2023-09-04 02:01:21] -rw------- 1 m m     4064 Sep  4 02:01 pilotlog.txt
[2023-09-04 02:01:21] -rw------- 1 m m   244325 Sep  4 02:01 f4154dea-d62c-4c6c-a884-a4c140d3e9a0_70379.1.job.log
[2023-09-04 02:01:21] -rw------- 1 m m      464 Sep  4 02:01 output.list
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m      748 Sep  4 02:01 runtime_log
[2023-09-04 02:01:21] -rw------- 1 m m  1832960 Sep  4 02:01 result.tar.gz
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m    11905 Sep  4 02:01 runtime_log.err
[2023-09-04 02:01:21] -rw------- 1 m m      626 Sep  4 02:01 rCgNDm3YCx3n7Olcko1bjSoqABFKDmABFKDm7AsVDmiaQKDm1y30Zn.diag
[2023-09-04 02:01:21] -rw-rw-r-- 1 m m    22726 Sep  4 02:01 stderr.txt
[2023-09-04 02:01:21] HITS file was successfully produced:
[2023-09-04 02:01:21] -rw------- 1 m m 1402419 Sep  4 01:55 shared/HITS.pool.root.1
[2023-09-04 02:01:21]  *** Contents of shared directory: ***
[2023-09-04 02:01:21] total 40460
[2023-09-04 02:01:21] -rw-r--r-- 2 m m    17604 Sep  4 01:26 start_atlas.sh
[2023-09-04 02:01:21] -rw-r--r-- 2 m m   428867 Sep  4 01:26 input.tar.gz
[2023-09-04 02:01:21] -rw-r--r-- 2 m m 37738636 Sep  4 01:26 ATLAS.root_0
[2023-09-04 02:01:21] -rw------- 1 m m  1402419 Sep  4 01:55 HITS.pool.root.1
[2023-09-04 02:01:21] -rw------- 1 m m  1832960 Sep  4 02:01 result.tar.gz
02:01:23 (2607): run_atlas exited; CPU time 493.242124
02:01:23 (2607): called boinc_finish(0)

</stderr_txt>
]]>


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