Task 3238526

Name	PN1NDmO9Cx3n7Olcko1bjSoqABFKDmABFKDm7AsVDmsaQKDmV08lcm_0
Workunit	2329558
Created	4 Sep 2023, 1:01:45 UTC
Sent	4 Sep 2023, 1:02:45 UTC
Report deadline	11 Sep 2023, 1:02:45 UTC
Received	4 Sep 2023, 1:31:14 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	1498
Run time	26 min 26 sec
CPU time	12 min 49 sec
Validate state	Valid
Credit	19.51
Device peak FLOPS	13.05 GFLOPS
Application version	ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu
Peak working set size	1.50 GB
Peak swap size	2.12 GB
Peak disk usage	79.86 MB
Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:03:58 (32165): wrapper (7.7.26015): starting
02:03:58 (32165): wrapper: running run_atlas (--nthreads 4)
[2023-09-04 02:03:58] Arguments: --nthreads 4
[2023-09-04 02:03:58] Threads: 4
[2023-09-04 02:03:58] Checking for CVMFS
[2023-09-04 02:03:58] Probing /cvmfs/atlas.cern.ch... OK
[2023-09-04 02:03:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-09-04 02:03:58] Running cvmfs_config stat atlas.cern.ch
[2023-09-04 02:03:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-09-04 02:03:59] 2.9.0.0 2829 37 38728 123178 2 73 3738804 4194304 0 130560 0 106779 98.486 241113 301 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2023-09-04 02:03:59] CVMFS is ok
[2023-09-04 02:03:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-09-04 02:03:59] Checking for apptainer binary...
[2023-09-04 02:03:59] Using apptainer found in PATH at /usr/bin/apptainer
[2023-09-04 02:03:59] Running /usr/bin/apptainer --version
[2023-09-04 02:03:59] apptainer version 1.0.3
[2023-09-04 02:03:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-09-04 02:03:59] TeeC16
[2023-09-04 02:03:59] apptainer works
[2023-09-04 02:03:59] Set ATHENA_PROC_NUMBER=4
[2023-09-04 02:03:59] Set ATHENA_CORE_NUMBER=4
[2023-09-04 02:03:59] Starting ATLAS job with PandaID=5951264918
[2023-09-04 02:03:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-09-04 02:30:22]  *** The last 200 lines of the pilot log: ***
[2023-09-04 02:30:22] 2023-09-04 01:29:29,380 | INFO     | maximum number of monitored processes: 5
[2023-09-04 02:30:22] 2023-09-04 01:29:31,881 | INFO     | monitor loop #210: job 0:5951264918 is in state 'stageout'
[2023-09-04 02:30:22] 2023-09-04 01:29:31,939 | INFO     | number of running child processes to parent process 11123: 1
[2023-09-04 02:30:22] 2023-09-04 01:29:31,940 | INFO     | maximum number of monitored processes: 5
[2023-09-04 02:30:22] 2023-09-04 01:29:32,257 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-09-04 02:30:22] 2023-09-04 01:29:32,436 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-09-04 02:30:22] 2023-09-04 01:29:32,436 | INFO     | will try again after 17s..
[2023-09-04 02:30:22] 2023-09-04 01:29:34,441 | INFO     | monitor loop #211: job 0:5951264918 is in state 'stageout'
[2023-09-04 02:30:22] 2023-09-04 01:29:34,506 | INFO     | number of running child processes to parent process 11123: 1
[2023-09-04 02:30:22] 2023-09-04 01:29:34,506 | INFO     | maximum number of monitored processes: 5
[2023-09-04 02:30:22] 2023-09-04 01:29:37,009 | INFO     | monitor loop #212: job 0:5951264918 is in state 'stageout'
[2023-09-04 02:30:22] 2023-09-04 01:29:37,064 | INFO     | number of running child processes to parent process 11123: 1
[2023-09-04 02:30:22] 2023-09-04 01:29:37,065 | INFO     | maximum number of monitored processes: 5
[2023-09-04 02:30:22] 2023-09-04 01:29:39,497 | INFO     | 1531s have passed since pilot start
[2023-09-04 02:30:22] 2023-09-04 01:29:39,568 | INFO     | monitor loop #213: job 0:5951264918 is in state 'stageout'
[2023-09-04 02:30:22] 2023-09-04 01:29:39,654 | INFO     | number of running child processes to parent process 11123: 1
[2023-09-04 02:30:22] 2023-09-04 01:29:39,654 | INFO     | maximum number of monitored processes: 5
[2023-09-04 02:30:22] 2023-09-04 01:29:42,164 | INFO     | monitor loop #214: job 0:5951264918 is in state 'stageout'
[2023-09-04 02:30:22] 2023-09-04 01:29:42,224 | INFO     | number of running child processes to parent process 11123: 1
[2023-09-04 02:30:22] 2023-09-04 01:29:42,224 | INFO     | maximum number of monitored processes: 5
[2023-09-04 02:30:22] 2023-09-04 01:29:44,725 | INFO     | monitor loop #215: job 0:5951264918 is in state 'stageout'
[2023-09-04 02:30:22] 2023-09-04 01:29:44,791 | INFO     | number of running child processes to parent process 11123: 1
[2023-09-04 02:30:22] 2023-09-04 01:29:44,791 | INFO     | maximum number of monitored processes: 5
[2023-09-04 02:30:22] 2023-09-04 01:29:47,293 | INFO     | monitor loop #216: job 0:5951264918 is in state 'stageout'
[2023-09-04 02:30:22] 2023-09-04 01:29:47,352 | INFO     | number of running child processes to parent process 11123: 1
[2023-09-04 02:30:22] 2023-09-04 01:29:47,352 | INFO     | maximum number of monitored processes: 5
[2023-09-04 02:30:22] 2023-09-04 01:29:49,521 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-09-04 02:30:22] 2023-09-04 01:29:49,655 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-09-04 02:30:22] 2023-09-04 01:29:49,656 | WARNING  | cache file=/home/m/BOINC/slots/3/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/home/m/BOINC/slots/3/agis_ddmendpoints.ag
[2023-09-04 02:30:22] 2023-09-04 01:29:49,740 | INFO     | transferring file 5684d1cf-f2ec-46c5-8ef1-381f53a72fcd_54566.1.job.log.tgz from /home/m/BOINC/slots/3/PanDA_Pilot-5951264918/5684d1cf-f2ec-46c5-8ef1-381f53a72fcd_5
[2023-09-04 02:30:22] 2023-09-04 01:29:49,740 | INFO     | executing command: /usr/bin/env mv /home/m/BOINC/slots/3/PanDA_Pilot-5951264918/5684d1cf-f2ec-46c5-8ef1-381f53a72fcd_54566.1.job.log.tgz /home/m/BOINC/slots/3/5684
[2023-09-04 02:30:22] 2023-09-04 01:29:49,767 | INFO     | Adding to output.list: 5684d1cf-f2ec-46c5-8ef1-381f53a72fcd_54566.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/1d/5e/5684d1cf-f2ec-
[2023-09-04 02:30:22] 2023-09-04 01:29:49,768 | INFO     | summary of transferred files:
[2023-09-04 02:30:22] 2023-09-04 01:29:49,768 | INFO     |  -- lfn=5684d1cf-f2ec-46c5-8ef1-381f53a72fcd_54566.1.job.log.tgz, status_code=0, status=transferred
[2023-09-04 02:30:22] 2023-09-04 01:29:49,768 | INFO     | stage-out finished correctly
[2023-09-04 02:30:22] 2023-09-04 01:29:49,856 | INFO     | monitor loop #217: job 0:5951264918 is in state 'finished'
[2023-09-04 02:30:22] 2023-09-04 01:29:49,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:30:22] 2023-09-04 01:29:49,899 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-09-04 02:30:22] 2023-09-04 01:29:51,117 | INFO     | job 5951264918 has state=finished
[2023-09-04 02:30:22] 2023-09-04 01:29:51,117 | INFO     | preparing for final server update for job 5951264918 in state='finished'
[2023-09-04 02:30:22] 2023-09-04 01:29:51,118 | INFO     | this job has now completed (state=finished)
[2023-09-04 02:30:22] 2023-09-04 01:29:51,118 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-09-04 02:30:22] 2023-09-04 01:29:51,118 | INFO     | job 5951264918 has finished - writing final server update
[2023-09-04 02:30:22] 2023-09-04 01:29:51,119 | INFO     | fitting pss+swap vs Time
[2023-09-04 02:30:22] 2023-09-04 01:29:51,120 | INFO     | current memory leak: 755.05 B/s (using 9 data points, chi2=0.05)
[2023-09-04 02:30:22] 2023-09-04 01:29:51,121 | INFO     | total number of processed events: 2 (read)
[2023-09-04 02:30:22] 2023-09-04 01:29:51,141 | INFO     | executing command: lscpu
[2023-09-04 02:30:22] 2023-09-04 01:29:51,159 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-09-04 02:30:22] 2023-09-04 01:29:51,160 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-09-04 02:30:22] 2023-09-04 01:29:51,195 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-09-04 02:30:22] 2023-09-04 01:29:52,357 | INFO     | monitor loop #218: job 0:5951264918 is in state 'finished'
[2023-09-04 02:30:22] 2023-09-04 01:29:52,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:30:22] 2023-09-04 01:29:54,866 | INFO     | monitor loop #219: job 0:5951264918 is in state 'finished'
[2023-09-04 02:30:22] 2023-09-04 01:29:54,867 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:30:22] 2023-09-04 01:29:57,400 | INFO     | monitor loop #220: job 0:5951264918 is in state 'finished'
[2023-09-04 02:30:22] 2023-09-04 01:29:57,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:30:22] 2023-09-04 01:29:59,905 | INFO     | monitor loop #221: job 0:5951264918 is in state 'finished'
[2023-09-04 02:30:22] 2023-09-04 01:29:59,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:30:22] 2023-09-04 01:30:02,415 | INFO     | monitor loop #222: job 0:5951264918 is in state 'finished'
[2023-09-04 02:30:22] 2023-09-04 01:30:02,415 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-04 02:30:22] 2023-09-04 01:30:02,635 | INFO     | CPU arch script returned: x86-64-v2
[2023-09-04 02:30:22] 2023-09-04 01:30:02,636 | INFO     | using path: /home/m/BOINC/slots/3/PanDA_Pilot-5951264918/memory_monitor_summary.json (trf name=prmon)
[2023-09-04 02:30:22] 2023-09-04 01:30:02,637 | INFO     | extracted standard info from prmon json
[2023-09-04 02:30:22] 2023-09-04 01:30:02,637 | INFO     | extracted standard memory fields from prmon json
[2023-09-04 02:30:22] 2023-09-04 01:30:02,637 | INFO     | ..............................
[2023-09-04 02:30:22] 2023-09-04 01:30:02,638 | INFO     | . Timing measurements:
[2023-09-04 02:30:22] 2023-09-04 01:30:02,638 | INFO     | . get job = 53 s
[2023-09-04 02:30:22] 2023-09-04 01:30:02,638 | INFO     | . initial setup = 56 s
[2023-09-04 02:30:22] 2023-09-04 01:30:02,638 | INFO     | . payload setup = 11 s
[2023-09-04 02:30:22] 2023-09-04 01:30:02,638 | INFO     | . stage-in = 53 s
[2023-09-04 02:30:22] 2023-09-04 01:30:02,638 | INFO     | . payload execution = 989 s
[2023-09-04 02:30:22] 2023-09-04 01:30:02,638 | INFO     | . stage-out = 353 s
[2023-09-04 02:30:22] 2023-09-04 01:30:02,638 | INFO     | ..............................
[2023-09-04 02:30:22] 2023-09-04 01:30:02,768 | INFO     | 
[2023-09-04 02:30:22] 2023-09-04 01:30:02,768 | INFO     | job summary report
[2023-09-04 02:30:22] 2023-09-04 01:30:02,768 | INFO     | --------------------------------------------------
[2023-09-04 02:30:22] 2023-09-04 01:30:02,768 | INFO     | PanDA job id: 5951264918
[2023-09-04 02:30:22] 2023-09-04 01:30:02,768 | INFO     | task id: NULL
[2023-09-04 02:30:22] 2023-09-04 01:30:02,768 | INFO     | errors: (none)
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | status: LOG_TRANSFER = DONE 
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | pilot state: finished 
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | transexitcode: 0
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | exeerrorcode: 0
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | exeerrordiag: 
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | exitcode: 0
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | exitmsg: OK
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | cpuconsumptiontime: 786 s
[2023-09-04 02:30:22] 2023-09-04 01:30:02,769 | INFO     | nevents: 2
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | neventsw: 0
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | pid: 11123
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | pgrp: 11123
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | corecount: 4
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | event service: False
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | sizes: {0: 2488770, 1: 2490305, 2: 2490305, 12: 2490479, 23: 2490507, 34: 2490535, 44: 2490691, 55: 2490719, 61: 2490807, 66: 2490835, 1004: 2510701, 1005: 2510980
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | --------------------------------------------------
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | 
[2023-09-04 02:30:22] 2023-09-04 01:30:02,770 | INFO     | executing command: ls -lF /home/m/BOINC/slots/3
[2023-09-04 02:30:22] 2023-09-04 01:30:02,791 | INFO     | queue jobs had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,792 | INFO     | queue payloads had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,792 | INFO     | queue data_in had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,792 | INFO     | queue data_out had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,792 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,792 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,794 | INFO     | queue completed_jobids has 1 job(s)
[2023-09-04 02:30:22] 2023-09-04 01:30:02,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,794 | INFO     | queue messages had 0 job(s) [purged]
[2023-09-04 02:30:22] 2023-09-04 01:30:02,794 | INFO     | job 5951264918 has completed (purged errors)
[2023-09-04 02:30:22] 2023-09-04 01:30:02,794 | INFO     | overall cleanup function is called
[2023-09-04 02:30:22] 2023-09-04 01:30:03,801 | INFO     | --- collectZombieJob: --- 10, [11123]
[2023-09-04 02:30:22] 2023-09-04 01:30:03,801 | INFO     | zombie collector trying to kill pid 11123
[2023-09-04 02:30:22] 2023-09-04 01:30:03,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-09-04 02:30:22] 2023-09-04 01:30:04,805 | INFO     | collected zombie processes
[2023-09-04 02:30:22] 2023-09-04 01:30:04,805 | INFO     | will now attempt to kill all subprocesses of pid=11123
[2023-09-04 02:30:22] 2023-09-04 01:30:04,912 | INFO     | process IDs to be killed: [11123] (in reverse order)
[2023-09-04 02:30:22] 2023-09-04 01:30:04,978 | WARNING  | found no corresponding commands to process id(s)
[2023-09-04 02:30:22] 2023-09-04 01:30:04,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-09-04 02:30:22] 2023-09-04 01:30:04,979 | INFO     | ready for new job
[2023-09-04 02:30:22] 2023-09-04 01:30:04,979 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-09-04 02:30:22] 2023-09-04 01:30:04,980 | INFO     | *************************************
[2023-09-04 02:30:22] 2023-09-04 01:30:04,980 | INFO     | ***  PanDA Pilot version 3.6.4.7  ***
[2023-09-04 02:30:22] 2023-09-04 01:30:04,980 | INFO     | *************************************
[2023-09-04 02:30:22] 2023-09-04 01:30:04,980 | INFO     | 
[2023-09-04 02:30:22] 2023-09-04 01:30:04,997 | INFO     | architecture information:
[2023-09-04 02:30:22] 2023-09-04 01:30:04,997 | INFO     | executing command: cat /etc/os-release
[2023-09-04 02:30:22] 2023-09-04 01:30:05,014 | INFO     | cat /etc/os-release:
[2023-09-04 02:30:22] NAME="CentOS Linux"
[2023-09-04 02:30:22] VERSION="7 (Core)"
[2023-09-04 02:30:22] ID="centos"
[2023-09-04 02:30:22] ID_LIKE="rhel fedora"
[2023-09-04 02:30:22] VERSION_ID="7"
[2023-09-04 02:30:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-09-04 02:30:22] ANSI_COLOR="0;31"
[2023-09-04 02:30:22] CPE_NAME="cpe:/o:centos:centos:7"
[2023-09-04 02:30:22] HOME_URL="https://www.centos.org/"
[2023-09-04 02:30:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-09-04 02:30:22] 
[2023-09-04 02:30:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-09-04 02:30:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-09-04 02:30:22] REDHAT_SUPPORT_PRODUCT="centos"
[2023-09-04 02:30:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-09-04 02:30:22] 
[2023-09-04 02:30:22] 2023-09-04 01:30:05,014 | INFO     | *************************************
[2023-09-04 02:30:22] 2023-09-04 01:30:05,517 | INFO     | executing command: df -mP /home/m/BOINC/slots/3
[2023-09-04 02:30:22] 2023-09-04 01:30:05,534 | INFO     | sufficient remaining disk space (423211565056 B)
[2023-09-04 02:30:22] 2023-09-04 01:30:05,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-09-04 02:30:22] 2023-09-04 01:30:05,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-09-04 02:30:22] 2023-09-04 01:30:05,535 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-09-04 02:30:22] 2023-09-04 01:30:05,535 | INFO     | found 0 job(s) in 20 queues
[2023-09-04 02:30:22] 2023-09-04 01:30:05,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-09-04 02:30:22] 2023-09-04 01:30:05,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-09-04 02:30:22] 2023-09-04 01:30:05,535 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-09-04 02:30:22] 2023-09-04 01:30:05,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-09-04 02:30:22] 2023-09-04 01:30:05,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-09-04 02:30:22] 2023-09-04 01:30:05,929 | INFO     | aborting loop
[2023-09-04 02:30:22] 2023-09-04 01:30:06,537 | INFO     | [job] retrieve thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:06,785 | INFO     | [job] create_data_payload thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:06,785 | INFO     | [data] copytool_in thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:06,789 | INFO     | [payload] execute_payloads thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:06,853 | INFO     | [data] control thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:06,921 | INFO     | [payload] control thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:06,933 | INFO     | [job] job monitor thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:07,189 | INFO     | [payload] failed_post thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:07,253 | INFO     | [job] control thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:07,404 | INFO     | [payload] validate_pre thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:07,541 | INFO     | [data] copytool_out thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:07,777 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-09-04 02:30:22] 2023-09-04 01:30:07,940 | INFO     | [payload] validate_post thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:07,961 | INFO     | [job] validate thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:08,781 | INFO     | [job] queue monitor thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:09,538 | INFO     | [data] queue_monitor thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:15,841 | INFO     | job.realtimelogging is not enabled
[2023-09-04 02:30:22] 2023-09-04 01:30:16,845 | INFO     | [payload] run_realtimelog thread has finished
[2023-09-04 02:30:22] 2023-09-04 01:30:17,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419893643072)>', '<ExcThread(monitor, started 140419392337664)>']
[2023-09-04 02:30:22] 2023-09-04 01:30:17,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-09-04 02:30:22] 2023-09-04 01:30:17,582 | INFO     | [monitor] control thread has ended
[2023-09-04 02:30:22] 2023-09-04 01:30:22,237 | INFO     | end of generic workflow (traces error code: 0)
[2023-09-04 02:30:22] 2023-09-04 01:30:22,237 | INFO     | traces error code: 0
[2023-09-04 02:30:22] 2023-09-04 01:30:22,237 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-09-04 02:30:22] 2023-09-04 01:30:22,309 [wrapper] ==== pilot stdout END ====
[2023-09-04 02:30:22] 2023-09-04 01:30:22,323 [wrapper] ==== wrapper stdout RESUME ====
[2023-09-04 02:30:22] 2023-09-04 01:30:22,328 [wrapper] pilotpid: 3247
[2023-09-04 02:30:22] 2023-09-04 01:30:22,332 [wrapper] Pilot exit status: 0
[2023-09-04 02:30:22] 2023-09-04 01:30:22,380 [wrapper] pandaids: 5951264918
[2023-09-04 02:30:22] 2023-09-04 01:30:22,388 [wrapper] apfmon messages muted
[2023-09-04 02:30:22] 2023-09-04 01:30:22,392 [wrapper] Test setup, not cleaning
[2023-09-04 02:30:22] 2023-09-04 01:30:22,397 [wrapper] ==== wrapper stdout END ====
[2023-09-04 02:30:22] 2023-09-04 01:30:22,400 [wrapper] ==== wrapper stderr END ====
[2023-09-04 02:30:22] 2023-09-04 01:30:22,408 [wrapper] wrapperexiting ec=0, duration=1583
[2023-09-04 02:30:22] 2023-09-04 01:30:22,412 [wrapper] apfmon messages muted
[2023-09-04 02:30:22]  *** Error codes and diagnostics ***
[2023-09-04 02:30:22]     "exeErrorCode": 0,
[2023-09-04 02:30:22]     "exeErrorDiag": "",
[2023-09-04 02:30:22]     "pilotErrorCode": 0,
[2023-09-04 02:30:22]     "pilotErrorDiag": "",
[2023-09-04 02:30:22]  *** Listing of results directory ***
[2023-09-04 02:30:22] total 43128
[2023-09-04 02:30:22] -rw-r--r-- 1 m m   418016 Sep  4 01:36 pilot3.tar.gz
[2023-09-04 02:30:22] -rwx------ 1 m m    27277 Sep  4 02:01 runpilot2-wrapper.sh
[2023-09-04 02:30:22] -rw-r--r-- 1 m m     4388 Sep  4 02:01 queuedata.json
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m      107 Sep  4 02:03 wrapper_26015_x86_64-pc-linux-gnu
[2023-09-04 02:30:22] -rwxr-xr-x 1 m m     7986 Sep  4 02:03 run_atlas
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m      112 Sep  4 02:03 job.xml
[2023-09-04 02:30:22] -rw-r--r-- 2 m m    17604 Sep  4 02:03 start_atlas.sh
[2023-09-04 02:30:22] drwxrwx--x 2 m m     4096 Sep  4 02:03 shared
[2023-09-04 02:30:22] -rw-r--r-- 2 m m   428868 Sep  4 02:03 input.tar.gz
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m     5755 Sep  4 02:03 init_data.xml
[2023-09-04 02:30:22] -rw-r--r-- 2 m m 37438704 Sep  4 02:03 EVNT.04972714._000033.pool.root.1
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m        0 Sep  4 02:03 boinc_lockfile
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m     2751 Sep  4 02:03 pandaJob.out
[2023-09-04 02:30:22] -rw------- 1 m m      424 Sep  4 02:03 setup.sh.local
[2023-09-04 02:30:22] -rw------- 1 m m  1028038 Sep  4 02:04 agis_schedconf.cvmfs.json
[2023-09-04 02:30:22] -rw------- 1 m m  1390011 Sep  4 02:05 cric_ddmendpoints.json
[2023-09-04 02:30:22] drwx------ 4 m m     4096 Sep  4 02:05 pilot3
[2023-09-04 02:30:22] -rw------- 1 m m  1251578 Sep  4 02:23 output.1.5684d1cf-f2ec-46c5-8ef1-381f53a72fcd_54566.pool.root
[2023-09-04 02:30:22] -rw------- 1 m m     1017 Sep  4 02:23 memory_monitor_summary.json
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m      533 Sep  4 02:24 boinc_task_state.xml
[2023-09-04 02:30:22] -rw------- 1 m m   162576 Sep  4 02:27 5684d1cf-f2ec-46c5-8ef1-381f53a72fcd_54566.1.job.log.tgz
[2023-09-04 02:30:22] -rw------- 1 m m     6668 Sep  4 02:30 heartbeat.json
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m     8192 Sep  4 02:30 boinc_mmap_file
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m       25 Sep  4 02:30 wrapper_checkpoint.txt
[2023-09-04 02:30:22] -rw------- 1 m m     4092 Sep  4 02:30 pilotlog.txt
[2023-09-04 02:30:22] -rw------- 1 m m   206178 Sep  4 02:30 5684d1cf-f2ec-46c5-8ef1-381f53a72fcd_54566.1.job.log
[2023-09-04 02:30:22] -rw------- 1 m m      464 Sep  4 02:30 output.list
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m      748 Sep  4 02:30 runtime_log
[2023-09-04 02:30:22] -rw------- 1 m m  1638400 Sep  4 02:30 result.tar.gz
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m    11905 Sep  4 02:30 runtime_log.err
[2023-09-04 02:30:22] -rw------- 1 m m      626 Sep  4 02:30 PN1NDmO9Cx3n7Olcko1bjSoqABFKDmABFKDm7AsVDmsaQKDmV08lcm.diag
[2023-09-04 02:30:22] -rw-rw-r-- 1 m m    22638 Sep  4 02:30 stderr.txt
[2023-09-04 02:30:22] HITS file was successfully produced:
[2023-09-04 02:30:22] -rw------- 1 m m 1251578 Sep  4 02:23 shared/HITS.pool.root.1
[2023-09-04 02:30:22]  *** Contents of shared directory: ***
[2023-09-04 02:30:22] total 39828
[2023-09-04 02:30:22] -rw-r--r-- 2 m m    17604 Sep  4 02:03 start_atlas.sh
[2023-09-04 02:30:22] -rw-r--r-- 2 m m   428868 Sep  4 02:03 input.tar.gz
[2023-09-04 02:30:22] -rw-r--r-- 2 m m 37438704 Sep  4 02:03 ATLAS.root_0
[2023-09-04 02:30:22] -rw------- 1 m m  1251578 Sep  4 02:23 HITS.pool.root.1
[2023-09-04 02:30:22] -rw------- 1 m m  1638400 Sep  4 02:30 result.tar.gz
02:30:23 (32165): run_atlas exited; CPU time 769.167517
02:30:23 (32165): called boinc_finish(0)

</stderr_txt>
]]>
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Stderr output
