| Name | 2BuLDm784y3n7Olcko1bjSoqABFKDmABFKDm7AsVDmysQKDmzVCwDm_0 |
| Workunit | 2330725 |
| Created | 9 Sep 2023, 4:53:10 UTC |
| Sent | 9 Sep 2023, 4:53:37 UTC |
| Report deadline | 16 Sep 2023, 4:53:37 UTC |
| Received | 9 Sep 2023, 5:41:12 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 4778 |
| Run time | 26 min 40 sec |
| CPU time | 8 min 14 sec |
| Validate state | Valid |
| Credit | 17.42 |
| Device peak FLOPS | 6.95 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.43 GB |
| Peak swap size | 2.12 GB |
| Peak disk usage | 79.61 MB |
Stderr output
<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
07:13:23 (712398): wrapper (7.7.26015): starting
07:13:23 (712398): wrapper: running run_atlas (--nthreads 3)
[2023-09-09 07:13:23] Arguments: --nthreads 3
[2023-09-09 07:13:23] Threads: 3
[2023-09-09 07:13:23] Checking for CVMFS
[2023-09-09 07:13:23] Probing /cvmfs/atlas.cern.ch... OK
[2023-09-09 07:13:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-09-09 07:13:23] Running cvmfs_config stat atlas.cern.ch
[2023-09-09 07:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-09-09 07:13:23] 2.11.0.0 689173 26 39056 123375 1 73 2508653 4194304 0 130560 0 100990 99.997 78 73 http://cernvmfs.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch DIRECT 1
[2023-09-09 07:13:23] CVMFS is ok
[2023-09-09 07:13:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2023-09-09 07:13:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2023-09-09 07:13:23] Small home clusters do not require a local http proxy but it is suggested if
[2023-09-09 07:13:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2023-09-09 07:13:23] Further information can be found at the LHC@home message board.
[2023-09-09 07:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-09-09 07:13:23] Checking for apptainer binary...
[2023-09-09 07:13:23] apptainer is not installed, using version from CVMFS
[2023-09-09 07:13:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-09-09 07:13:24] dbgrensenh27vm
[2023-09-09 07:13:24] apptainer works
[2023-09-09 07:13:24] Set ATHENA_PROC_NUMBER=3
[2023-09-09 07:13:24] Set ATHENA_CORE_NUMBER=3
[2023-09-09 07:13:24] Starting ATLAS job with PandaID=5958237704
[2023-09-09 07:13:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-09-09 07:39:59] *** The last 200 lines of the pilot log: ***
[2023-09-09 07:39:59] 2023-09-09 05:39:01,257 | INFO | maximum number of monitored processes: 8
[2023-09-09 07:39:59] 2023-09-09 05:39:03,768 | INFO | monitor loop #220: job 0:5958237704 is in state 'stageout'
[2023-09-09 07:39:59] 2023-09-09 05:39:03,845 | INFO | number of running child processes to parent process 722843: 1
[2023-09-09 07:39:59] 2023-09-09 05:39:03,845 | INFO | maximum number of monitored processes: 8
[2023-09-09 07:39:59] 2023-09-09 05:39:06,358 | INFO | monitor loop #221: job 0:5958237704 is in state 'stageout'
[2023-09-09 07:39:59] 2023-09-09 05:39:06,477 | INFO | number of running child processes to parent process 722843: 1
[2023-09-09 07:39:59] 2023-09-09 05:39:06,478 | INFO | maximum number of monitored processes: 8
[2023-09-09 07:39:59] 2023-09-09 05:39:08,983 | INFO | monitor loop #222: job 0:5958237704 is in state 'stageout'
[2023-09-09 07:39:59] 2023-09-09 05:39:09,113 | INFO | number of running child processes to parent process 722843: 1
[2023-09-09 07:39:59] 2023-09-09 05:39:09,113 | INFO | maximum number of monitored processes: 8
[2023-09-09 07:39:59] 2023-09-09 05:39:11,622 | INFO | monitor loop #223: job 0:5958237704 is in state 'stageout'
[2023-09-09 07:39:59] 2023-09-09 05:39:11,715 | INFO | number of running child processes to parent process 722843: 1
[2023-09-09 07:39:59] 2023-09-09 05:39:11,715 | INFO | maximum number of monitored processes: 8
[2023-09-09 07:39:59] 2023-09-09 05:39:14,227 | INFO | monitor loop #224: job 0:5958237704 is in state 'stageout'
[2023-09-09 07:39:59] 2023-09-09 05:39:14,311 | INFO | number of running child processes to parent process 722843: 1
[2023-09-09 07:39:59] 2023-09-09 05:39:14,312 | INFO | maximum number of monitored processes: 8
[2023-09-09 07:39:59] 2023-09-09 05:39:16,818 | INFO | monitor loop #225: job 0:5958237704 is in state 'stageout'
[2023-09-09 07:39:59] 2023-09-09 05:39:16,936 | INFO | number of running child processes to parent process 722843: 1
[2023-09-09 07:39:59] 2023-09-09 05:39:16,937 | INFO | maximum number of monitored processes: 8
[2023-09-09 07:39:59] 2023-09-09 05:39:19,495 | INFO | monitor loop #226: job 0:5958237704 is in state 'stageout'
[2023-09-09 07:39:59] 2023-09-09 05:39:19,590 | INFO | number of running child processes to parent process 722843: 1
[2023-09-09 07:39:59] 2023-09-09 05:39:19,591 | INFO | maximum number of monitored processes: 8
[2023-09-09 07:39:59] 2023-09-09 05:39:20,899 | INFO | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-09-09 07:39:59] 2023-09-09 05:39:20,990 | WARNING | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed:
[2023-09-09 07:39:59] 2023-09-09 05:39:20,991 | WARNING | cache file=/var/lib/boinc-client/slots/1/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/1/agis
[2023-09-09 07:39:59] 2023-09-09 05:39:21,025 | INFO | transferring file f63b0a50-0ba7-4ee7-bbf3-0bfbc8c40bc8_8454.1.job.log.tgz from /var/lib/boinc-client/slots/1/PanDA_Pilot-5958237704/f63b0a50-0ba7-4ee7-bbf3-0bfbc8c
[2023-09-09 07:39:59] 2023-09-09 05:39:21,025 | INFO | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-5958237704/f63b0a50-0ba7-4ee7-bbf3-0bfbc8c40bc8_8454.1.job.log.tgz /var/lib/boinc-clie
[2023-09-09 07:39:59] 2023-09-09 05:39:21,094 | INFO | Adding to output.list: f63b0a50-0ba7-4ee7-bbf3-0bfbc8c40bc8_8454.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/88/ad/f63b0a50-0ba7-4
[2023-09-09 07:39:59] 2023-09-09 05:39:21,094 | INFO | summary of transferred files:
[2023-09-09 07:39:59] 2023-09-09 05:39:21,094 | INFO | -- lfn=f63b0a50-0ba7-4ee7-bbf3-0bfbc8c40bc8_8454.1.job.log.tgz, status_code=0, status=transferred
[2023-09-09 07:39:59] 2023-09-09 05:39:21,095 | INFO | stage-out finished correctly
[2023-09-09 07:39:59] 2023-09-09 05:39:21,144 | INFO | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-09-09 07:39:59] 2023-09-09 05:39:21,713 | INFO | job 5958237704 has state=finished
[2023-09-09 07:39:59] 2023-09-09 05:39:21,713 | INFO | preparing for final server update for job 5958237704 in state='finished'
[2023-09-09 07:39:59] 2023-09-09 05:39:21,714 | INFO | this job has now completed (state=finished)
[2023-09-09 07:39:59] 2023-09-09 05:39:21,714 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2023-09-09 07:39:59] 2023-09-09 05:39:21,718 | INFO | job 5958237704 has finished - writing final server update
[2023-09-09 07:39:59] 2023-09-09 05:39:21,719 | INFO | fitting pss+swap vs Time
[2023-09-09 07:39:59] 2023-09-09 05:39:21,729 | INFO | current memory leak: 2305.65 B/s (using 8 data points, chi2=0.04)
[2023-09-09 07:39:59] 2023-09-09 05:39:21,730 | INFO | total number of processed events: 2 (read)
[2023-09-09 07:39:59] 2023-09-09 05:39:21,745 | INFO | executing command: lscpu
[2023-09-09 07:39:59] 2023-09-09 05:39:21,782 | INFO | found 6 cores (6 cores per socket, 1 sockets)
[2023-09-09 07:39:59] 2023-09-09 05:39:21,782 | INFO | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-09-09 07:39:59] 2023-09-09 05:39:21,868 | INFO | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-09-09 07:39:59] 2023-09-09 05:39:22,099 | INFO | monitor loop #227: job 0:5958237704 is in state 'finished'
[2023-09-09 07:39:59] 2023-09-09 05:39:22,100 | INFO | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-09 07:39:59] 2023-09-09 05:39:24,613 | INFO | monitor loop #228: job 0:5958237704 is in state 'finished'
[2023-09-09 07:39:59] 2023-09-09 05:39:24,613 | INFO | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-09 07:39:59] 2023-09-09 05:39:26,757 | INFO | 1543s have passed since pilot start
[2023-09-09 07:39:59] 2023-09-09 05:39:27,117 | INFO | monitor loop #229: job 0:5958237704 is in state 'finished'
[2023-09-09 07:39:59] 2023-09-09 05:39:27,117 | INFO | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-09 07:39:59] 2023-09-09 05:39:29,623 | INFO | monitor loop #230: job 0:5958237704 is in state 'finished'
[2023-09-09 07:39:59] 2023-09-09 05:39:29,623 | INFO | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-09 07:39:59] 2023-09-09 05:39:32,127 | INFO | monitor loop #231: job 0:5958237704 is in state 'finished'
[2023-09-09 07:39:59] 2023-09-09 05:39:32,128 | INFO | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-09 07:39:59] 2023-09-09 05:39:34,631 | INFO | monitor loop #232: job 0:5958237704 is in state 'finished'
[2023-09-09 07:39:59] 2023-09-09 05:39:34,632 | INFO | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-09 07:39:59] 2023-09-09 05:39:37,135 | INFO | monitor loop #233: job 0:5958237704 is in state 'finished'
[2023-09-09 07:39:59] 2023-09-09 05:39:37,135 | INFO | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-09-09 07:39:59] 2023-09-09 05:39:37,739 | INFO | CPU arch script returned: x86-64-v2
[2023-09-09 07:39:59] 2023-09-09 05:39:37,739 | INFO | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-5958237704/memory_monitor_summary.json (trf name=prmon)
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | extracted standard info from prmon json
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | extracted standard memory fields from prmon json
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | ..............................
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | . Timing measurements:
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | . get job = 69 s
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | . initial setup = 61 s
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | . payload setup = 42 s
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | . stage-in = 67 s
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | . payload execution = 900 s
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | . stage-out = 362 s
[2023-09-09 07:39:59] 2023-09-09 05:39:37,740 | INFO | ..............................
[2023-09-09 07:39:59] 2023-09-09 05:39:37,799 | INFO |
[2023-09-09 07:39:59] 2023-09-09 05:39:37,799 | INFO | job summary report
[2023-09-09 07:39:59] 2023-09-09 05:39:37,799 | INFO | --------------------------------------------------
[2023-09-09 07:39:59] 2023-09-09 05:39:37,799 | INFO | PanDA job id: 5958237704
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | task id: NULL
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | errors: (none)
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | status: LOG_TRANSFER = DONE
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | pilot state: finished
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | transexitcode: 0
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | exeerrorcode: 0
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | exeerrordiag:
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | exitcode: 0
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | exitmsg: OK
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | cpuconsumptiontime: 640 s
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | nevents: 2
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | neventsw: 0
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | pid: 722843
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | pgrp: 722843
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | corecount: 3
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | event service: False
[2023-09-09 07:39:59] 2023-09-09 05:39:37,800 | INFO | sizes: {0: 2490278, 11: 2490278, 21: 2490452, 32: 2490480, 43: 2490508, 53: 2490536, 64: 2490692, 74: 2490748, 79: 2490836, 85: 2490892, 946: 2510970, 1310: 252034
[2023-09-09 07:39:59] 2023-09-09 05:39:37,801 | INFO | --------------------------------------------------
[2023-09-09 07:39:59] 2023-09-09 05:39:37,801 | INFO |
[2023-09-09 07:39:59] 2023-09-09 05:39:37,801 | INFO | executing command: ls -lF /var/lib/boinc-client/slots/1
[2023-09-09 07:39:59] 2023-09-09 05:39:37,851 | INFO | queue jobs had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue payloads had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue data_in had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue data_out had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue current_data_in had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue validated_jobs had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue validated_payloads had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue monitored_payloads had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue finished_jobs had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue finished_payloads had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue finished_data_in had 1 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue finished_data_out had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue failed_jobs had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue failed_payloads had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue failed_data_in had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,852 | INFO | queue failed_data_out had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,853 | INFO | queue completed_jobs had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,853 | INFO | queue completed_jobids has 1 job(s)
[2023-09-09 07:39:59] 2023-09-09 05:39:37,853 | INFO | queue realtimelog_payloads had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,853 | INFO | queue messages had 0 job(s) [purged]
[2023-09-09 07:39:59] 2023-09-09 05:39:37,853 | INFO | job 5958237704 has completed (purged errors)
[2023-09-09 07:39:59] 2023-09-09 05:39:37,853 | INFO | overall cleanup function is called
[2023-09-09 07:39:59] 2023-09-09 05:39:38,872 | INFO | --- collectZombieJob: --- 10, [722843]
[2023-09-09 07:39:59] 2023-09-09 05:39:38,872 | INFO | zombie collector trying to kill pid 722843
[2023-09-09 07:39:59] 2023-09-09 05:39:38,872 | INFO | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-09-09 07:39:59] 2023-09-09 05:39:39,880 | INFO | collected zombie processes
[2023-09-09 07:39:59] 2023-09-09 05:39:39,880 | INFO | will now attempt to kill all subprocesses of pid=722843
[2023-09-09 07:39:59] 2023-09-09 05:39:39,970 | INFO | process IDs to be killed: [722843] (in reverse order)
[2023-09-09 07:39:59] 2023-09-09 05:39:40,065 | WARNING | found no corresponding commands to process id(s)
[2023-09-09 07:39:59] 2023-09-09 05:39:40,065 | INFO | Do not look for orphan processes in BOINC jobs
[2023-09-09 07:39:59] 2023-09-09 05:39:40,065 | INFO | ready for new job
[2023-09-09 07:39:59] 2023-09-09 05:39:40,065 | INFO | pilot has finished with previous job - re-establishing logging
[2023-09-09 07:39:59] 2023-09-09 05:39:40,066 | INFO | *************************************
[2023-09-09 07:39:59] 2023-09-09 05:39:40,066 | INFO | *** PanDA Pilot version 3.6.4.7 ***
[2023-09-09 07:39:59] 2023-09-09 05:39:40,066 | INFO | *************************************
[2023-09-09 07:39:59] 2023-09-09 05:39:40,066 | INFO |
[2023-09-09 07:39:59] 2023-09-09 05:39:40,066 | INFO | pilot is running in a VM
[2023-09-09 07:39:59] 2023-09-09 05:39:40,067 | INFO | architecture information:
[2023-09-09 07:39:59] 2023-09-09 05:39:40,069 | INFO | executing command: cat /etc/os-release
[2023-09-09 07:39:59] 2023-09-09 05:39:40,100 | INFO | cat /etc/os-release:
[2023-09-09 07:39:59] NAME="CentOS Linux"
[2023-09-09 07:39:59] VERSION="7 (Core)"
[2023-09-09 07:39:59] ID="centos"
[2023-09-09 07:39:59] ID_LIKE="rhel fedora"
[2023-09-09 07:39:59] VERSION_ID="7"
[2023-09-09 07:39:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-09-09 07:39:59] ANSI_COLOR="0;31"
[2023-09-09 07:39:59] CPE_NAME="cpe:/o:centos:centos:7"
[2023-09-09 07:39:59] HOME_URL="https://www.centos.org/"
[2023-09-09 07:39:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-09-09 07:39:59]
[2023-09-09 07:39:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-09-09 07:39:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-09-09 07:39:59] REDHAT_SUPPORT_PRODUCT="centos"
[2023-09-09 07:39:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-09-09 07:39:59]
[2023-09-09 07:39:59] 2023-09-09 05:39:40,101 | INFO | *************************************
[2023-09-09 07:39:59] 2023-09-09 05:39:40,602 | INFO | executing command: df -mP /var/lib/boinc-client/slots/1
[2023-09-09 07:39:59] 2023-09-09 05:39:40,653 | INFO | sufficient remaining disk space (37616615424 B)
[2023-09-09 07:39:59] 2023-09-09 05:39:40,653 | WARNING | since timefloor is set to 0, pilot was only allowed to run one job
[2023-09-09 07:39:59] 2023-09-09 05:39:40,653 | WARNING | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-09-09 07:39:59] 2023-09-09 05:39:40,653 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-09-09 07:39:59] 2023-09-09 05:39:40,654 | INFO | found 0 job(s) in 20 queues
[2023-09-09 07:39:59] 2023-09-09 05:39:40,654 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2023-09-09 07:39:59] 2023-09-09 05:39:40,654 | WARNING | will wait for a maximum of 300 s for threads to finish
[2023-09-09 07:39:59] 2023-09-09 05:39:40,654 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2023-09-09 07:39:59] 2023-09-09 05:39:40,654 | INFO | aborting loop
[2023-09-09 07:39:59] 2023-09-09 05:39:40,775 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-09-09 07:39:59] 2023-09-09 05:39:41,660 | INFO | [job] retrieve thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:41,661 | INFO | [job] job monitor thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:41,699 | WARNING | data:copytool_out:received graceful stop - abort after this iteration
[2023-09-09 07:39:59] 2023-09-09 05:39:41,891 | INFO | [data] copytool_in thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:41,977 | INFO | [payload] validate_post thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:42,109 | INFO | [payload] control thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:42,183 | INFO | [job] validate thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:42,404 | INFO | [data] control thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:42,611 | INFO | [job] control thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:42,685 | INFO | [payload] failed_post thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:42,811 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2023-09-09 07:39:59] 2023-09-09 05:39:43,181 | INFO | [job] create_data_payload thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:43,182 | INFO | [payload] validate_pre thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:43,182 | INFO | [payload] execute_payloads thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:43,718 | INFO | [data] copytool_out thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:43,815 | INFO | [job] queue monitor thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:44,788 | INFO | [data] queue_monitor thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:51,399 | INFO | job.realtimelogging is not enabled
[2023-09-09 07:39:59] 2023-09-09 05:39:52,404 | INFO | [payload] run_realtimelog thread has finished
[2023-09-09 07:39:59] 2023-09-09 05:39:54,299 | INFO | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140511492990784)>', '<ExcThread(monitor, started 140510685538048)>']
[2023-09-09 07:39:59] 2023-09-09 05:39:54,739 | WARNING | job_aborted has been set - aborting pilot monitoring
[2023-09-09 07:39:59] 2023-09-09 05:39:54,740 | INFO | [monitor] control thread has ended
[2023-09-09 07:39:59] 2023-09-09 05:39:59,323 | INFO | end of generic workflow (traces error code: 0)
[2023-09-09 07:39:59] 2023-09-09 05:39:59,324 | INFO | traces error code: 0
[2023-09-09 07:39:59] 2023-09-09 05:39:59,325 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2023-09-09 07:39:59] 2023-09-09 05:39:59,432 [wrapper] ==== pilot stdout END ====
[2023-09-09 07:39:59] 2023-09-09 05:39:59,441 [wrapper] ==== wrapper stdout RESUME ====
[2023-09-09 07:39:59] 2023-09-09 05:39:59,450 [wrapper] pilotpid: 715567
[2023-09-09 07:39:59] 2023-09-09 05:39:59,465 [wrapper] Pilot exit status: 0
[2023-09-09 07:39:59] 2023-09-09 05:39:59,500 [wrapper] pandaids: 5958237704
[2023-09-09 07:39:59] 2023-09-09 05:39:59,524 [wrapper] apfmon messages muted
[2023-09-09 07:39:59] 2023-09-09 05:39:59,540 [wrapper] Test setup, not cleaning
[2023-09-09 07:39:59] 2023-09-09 05:39:59,550 [wrapper] ==== wrapper stdout END ====
[2023-09-09 07:39:59] 2023-09-09 05:39:59,558 [wrapper] ==== wrapper stderr END ====
[2023-09-09 07:39:59] 2023-09-09 05:39:59,574 [wrapper] wrapperexiting ec=0, duration=1594
[2023-09-09 07:39:59] 2023-09-09 05:39:59,582 [wrapper] apfmon messages muted
[2023-09-09 07:39:59] *** Error codes and diagnostics ***
[2023-09-09 07:39:59] "exeErrorCode": 0,
[2023-09-09 07:39:59] "exeErrorDiag": "",
[2023-09-09 07:39:59] "pilotErrorCode": 0,
[2023-09-09 07:39:59] "pilotErrorDiag": "",
[2023-09-09 07:39:59] *** Listing of results directory ***
[2023-09-09 07:39:59] total 43272
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 418016 sep 9 06:39 pilot3.tar.gz
[2023-09-09 07:39:59] -rwx------ 1 boinc boinc 27277 sep 9 06:53 runpilot2-wrapper.sh
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 4388 sep 9 06:53 queuedata.json
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 107 sep 9 07:13 wrapper_26015_x86_64-pc-linux-gnu
[2023-09-09 07:39:59] -rwxr-xr-x 1 boinc boinc 7986 sep 9 07:13 run_atlas
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 112 sep 9 07:13 job.xml
[2023-09-09 07:39:59] -rw-r--r-- 2 boinc boinc 17600 sep 9 07:13 start_atlas.sh
[2023-09-09 07:39:59] drwxrwx--x 2 boinc boinc 4096 sep 9 07:13 shared
[2023-09-09 07:39:59] -rw-r--r-- 2 boinc boinc 428863 sep 9 07:13 input.tar.gz
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 6836 sep 9 07:13 init_data.xml
[2023-09-09 07:39:59] -rw-r--r-- 2 boinc boinc 36949600 sep 9 07:13 EVNT.04972714._000039.pool.root.1
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 0 sep 9 07:13 boinc_lockfile
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 2747 sep 9 07:13 pandaJob.out
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 424 sep 9 07:13 setup.sh.local
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 1389912 sep 9 07:14 cric_ddmendpoints.json
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 1023796 sep 9 07:14 agis_schedconf.cvmfs.json
[2023-09-09 07:39:59] drwx------ 4 boinc boinc 4096 sep 9 07:15 pilot3
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 533 sep 9 07:33 boinc_task_state.xml
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 1573608 sep 9 07:33 output.1.f63b0a50-0ba7-4ee7-bbf3-0bfbc8c40bc8_8454.pool.root
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 1003 sep 9 07:33 memory_monitor_summary.json
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 159351 sep 9 07:36 f63b0a50-0ba7-4ee7-bbf3-0bfbc8c40bc8_8454.1.job.log.tgz
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 6651 sep 9 07:39 heartbeat.json
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 8192 sep 9 07:39 boinc_mmap_file
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 25 sep 9 07:39 wrapper_checkpoint.txt
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 4161 sep 9 07:39 pilotlog.txt
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 204633 sep 9 07:39 f63b0a50-0ba7-4ee7-bbf3-0bfbc8c40bc8_8454.1.job.log
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 460 sep 9 07:39 output.list
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 744 sep 9 07:39 runtime_log
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 1955840 sep 9 07:39 result.tar.gz
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 12091 sep 9 07:39 runtime_log.err
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 636 sep 9 07:39 2BuLDm784y3n7Olcko1bjSoqABFKDmABFKDm7AsVDmysQKDmzVCwDm.diag
[2023-09-09 07:39:59] -rw-r--r-- 1 boinc boinc 23088 sep 9 07:39 stderr.txt
[2023-09-09 07:39:59] HITS file was successfully produced:
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 1573608 sep 9 07:33 shared/HITS.pool.root.1
[2023-09-09 07:39:59] *** Contents of shared directory: ***
[2023-09-09 07:39:59] total 39980
[2023-09-09 07:39:59] -rw-r--r-- 2 boinc boinc 17600 sep 9 07:13 start_atlas.sh
[2023-09-09 07:39:59] -rw-r--r-- 2 boinc boinc 428863 sep 9 07:13 input.tar.gz
[2023-09-09 07:39:59] -rw-r--r-- 2 boinc boinc 36949600 sep 9 07:13 ATLAS.root_0
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 1573608 sep 9 07:33 HITS.pool.root.1
[2023-09-09 07:39:59] -rw------- 1 boinc boinc 1955840 sep 9 07:39 result.tar.gz
07:40:01 (712398): run_atlas exited; CPU time 494.377553
07:40:01 (712398): called boinc_finish(0)
</stderr_txt>
]]>
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