Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
00:50:32 (2364221): wrapper (7.7.26015): starting
00:50:32 (2364221): wrapper: running run_atlas (--nthreads 1)
[2023-10-14 00:50:32] Arguments: --nthreads 1
[2023-10-14 00:50:32] Threads: 1
[2023-10-14 00:50:32] Checking for CVMFS
[2023-10-14 00:50:32] Probing /cvmfs/atlas.cern.ch... OK
[2023-10-14 00:50:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-10-14 00:50:32] Running cvmfs_config stat atlas.cern.ch
[2023-10-14 00:50:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-10-14 00:50:32] 2.11.0.0 2310684 58 45872 124737 2 75 3460408 4096000 0 130560 0 141188 99.971 33164 3341 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2023-10-14 00:50:32] CVMFS is ok
[2023-10-14 00:50:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2023-10-14 00:50:32] Small home clusters do not require a local http proxy but it is suggested if
[2023-10-14 00:50:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2023-10-14 00:50:32] Further information can be found at the LHC@home message board.
[2023-10-14 00:50:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-10-14 00:50:32] Checking for apptainer binary...
[2023-10-14 00:50:32] Using apptainer found in PATH at /usr/local/bin/apptainer
[2023-10-14 00:50:32] Running /usr/local/bin/apptainer --version
[2023-10-14 00:50:32] apptainer version 1.2.3+286-g3ac6f0cb6
[2023-10-14 00:50:32] Checking apptainer works with /usr/local/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-10-14 00:50:33] T5810
[2023-10-14 00:50:33] apptainer works
[2023-10-14 00:50:33] Starting ATLAS job with PandaID=5989667779
[2023-10-14 00:50:33] Running command: /usr/local/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-10-14 01:17:04]  *** The last 200 lines of the pilot log: ***
[2023-10-14 01:17:04] 2023-10-14 07:16:02,571 | INFO     | monitor loop #219: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:02,572 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:05,072 | INFO     | monitor loop #220: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:05,072 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:07,575 | INFO     | monitor loop #221: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:07,576 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:10,076 | INFO     | monitor loop #222: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:10,076 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:12,579 | INFO     | monitor loop #223: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:12,580 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:15,080 | INFO     | monitor loop #224: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:15,080 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:17,583 | INFO     | monitor loop #225: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:17,583 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:20,084 | INFO     | monitor loop #226: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:20,084 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:22,585 | INFO     | monitor loop #227: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:22,586 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:25,088 | INFO     | monitor loop #228: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:25,088 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:27,591 | INFO     | monitor loop #229: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:27,591 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:30,092 | INFO     | monitor loop #230: job 0:5989667779 is in state 'stageout'
[2023-10-14 01:17:04] 2023-10-14 07:16:30,092 | WARNING  | aborting job monitor tasks since payload process 2375344 is not running
[2023-10-14 01:17:04] 2023-10-14 07:16:30,220 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-10-14 01:17:04] 2023-10-14 07:16:31,105 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-10-14 01:17:04] 2023-10-14 07:16:31,105 | WARNING  | cache file=/var/lib/boinc-client/slots/15/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/15/ag
[2023-10-14 01:17:04] 2023-10-14 07:16:31,160 | INFO     | transferring file 85b5e274-bb33-4785-87af-0947b6d3de57_7651.1.job.log.tgz from /var/lib/boinc-client/slots/15/PanDA_Pilot-5989667779/85b5e274-bb33-4785-87af-0947b6
[2023-10-14 01:17:04] 2023-10-14 07:16:31,160 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/15/PanDA_Pilot-5989667779/85b5e274-bb33-4785-87af-0947b6d3de57_7651.1.job.log.tgz /var/lib/boinc-cli
[2023-10-14 01:17:04] 2023-10-14 07:16:31,175 | INFO     | Adding to output.list: 85b5e274-bb33-4785-87af-0947b6d3de57_7651.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/8c/41/85b5e274-bb33-4
[2023-10-14 01:17:04] 2023-10-14 07:16:31,176 | INFO     | summary of transferred files:
[2023-10-14 01:17:04] 2023-10-14 07:16:31,176 | INFO     |  -- lfn=85b5e274-bb33-4785-87af-0947b6d3de57_7651.1.job.log.tgz, status_code=0, status=transferred
[2023-10-14 01:17:04] 2023-10-14 07:16:31,176 | INFO     | stage-out finished correctly
[2023-10-14 01:17:04] 2023-10-14 07:16:32,595 | INFO     | monitor loop #231: job 0:5989667779 is in state 'finished'
[2023-10-14 01:17:04] 2023-10-14 07:16:32,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-14 01:17:04] 2023-10-14 07:16:33,016 | INFO     | 1547s have passed since pilot start
[2023-10-14 01:17:04] 2023-10-14 07:16:33,688 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-10-14 01:17:04] 2023-10-14 07:16:35,096 | INFO     | monitor loop #232: job 0:5989667779 is in state 'finished'
[2023-10-14 01:17:04] 2023-10-14 07:16:35,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-14 01:17:04] 2023-10-14 07:16:36,492 | INFO     | job 5989667779 has state=finished
[2023-10-14 01:17:04] 2023-10-14 07:16:36,492 | INFO     | preparing for final server update for job 5989667779 in state='finished'
[2023-10-14 01:17:04] 2023-10-14 07:16:36,493 | INFO     | this job has now completed (state=finished)
[2023-10-14 01:17:04] 2023-10-14 07:16:36,493 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-10-14 01:17:04] 2023-10-14 07:16:36,493 | INFO     | job 5989667779 has finished - writing final server update
[2023-10-14 01:17:04] 2023-10-14 07:16:36,493 | INFO     | total number of processed events: 2 (read)
[2023-10-14 01:17:04] 2023-10-14 07:16:36,514 | INFO     | executing command: lscpu
[2023-10-14 01:17:04] 2023-10-14 07:16:36,536 | INFO     | found 14 cores (14 cores per socket, 1 sockets)
[2023-10-14 01:17:04] 2023-10-14 07:16:36,536 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-10-14 01:17:04] 2023-10-14 07:16:36,562 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-10-14 01:17:04] 2023-10-14 07:16:37,599 | INFO     | monitor loop #233: job 0:5989667779 is in state 'finished'
[2023-10-14 01:17:04] 2023-10-14 07:16:37,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-14 01:17:04] 2023-10-14 07:16:40,100 | INFO     | monitor loop #234: job 0:5989667779 is in state 'finished'
[2023-10-14 01:17:04] 2023-10-14 07:16:40,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-14 01:17:04] 2023-10-14 07:16:42,603 | INFO     | monitor loop #235: job 0:5989667779 is in state 'finished'
[2023-10-14 01:17:04] 2023-10-14 07:16:42,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-14 01:17:04] 2023-10-14 07:16:43,368 | INFO     | CPU arch script returned: x86-64-v3
[2023-10-14 01:17:04] 2023-10-14 07:16:43,368 | INFO     | using path: /var/lib/boinc-client/slots/15/PanDA_Pilot-5989667779/memory_monitor_summary.json (trf name=prmon)
[2023-10-14 01:17:04] 2023-10-14 07:16:43,369 | INFO     | extracted standard info from prmon json
[2023-10-14 01:17:04] 2023-10-14 07:16:43,369 | INFO     | extracted standard memory fields from prmon json
[2023-10-14 01:17:04] 2023-10-14 07:16:43,370 | INFO     | fitting pss+swap vs Time
[2023-10-14 01:17:04] 2023-10-14 07:16:43,371 | INFO     | current memory leak: 1792.18 B/s (using 9 data points, chi2=0.08)
[2023-10-14 01:17:04] 2023-10-14 07:16:43,371 | INFO     | ..............................
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | . Timing measurements:
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | . get job = 49 s
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | . initial setup = 74 s
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | . payload setup = 13 s
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | . stage-in = 71 s
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | . payload execution = 942 s
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | . stage-out = 369 s
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | . log creation = 0 s
[2023-10-14 01:17:04] 2023-10-14 07:16:43,372 | INFO     | ..............................
[2023-10-14 01:17:04] 2023-10-14 07:16:43,827 | INFO     | 
[2023-10-14 01:17:04] 2023-10-14 07:16:43,827 | INFO     | job summary report
[2023-10-14 01:17:04] 2023-10-14 07:16:43,827 | INFO     | --------------------------------------------------
[2023-10-14 01:17:04] 2023-10-14 07:16:43,827 | INFO     | PanDA job id: 5989667779
[2023-10-14 01:17:04] 2023-10-14 07:16:43,827 | INFO     | task id: NULL
[2023-10-14 01:17:04] 2023-10-14 07:16:43,827 | INFO     | errors: (none)
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | status: LOG_TRANSFER = DONE 
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | pilot state: finished 
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | transexitcode: 0
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | exeerrorcode: 0
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | exeerrordiag: 
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | exitcode: 0
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | exitmsg: OK
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | cpuconsumptiontime: 278 s
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | nevents: 2
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | neventsw: 0
[2023-10-14 01:17:04] 2023-10-14 07:16:43,828 | INFO     | pid: 2375344
[2023-10-14 01:17:04] 2023-10-14 07:16:43,829 | INFO     | pgrp: 2375344
[2023-10-14 01:17:04] 2023-10-14 07:16:43,829 | INFO     | corecount: 1
[2023-10-14 01:17:04] 2023-10-14 07:16:43,829 | INFO     | event service: False
[2023-10-14 01:17:04] 2023-10-14 07:16:43,829 | INFO     | sizes: {0: 2434395, 1: 2435939, 12: 2436085, 22: 2436113, 33: 2436141, 44: 2436169, 54: 2436325, 65: 2436353, 75: 2436381, 78: 2436469, 86: 2436525, 959: 2458330, 
[2023-10-14 01:17:04] 2023-10-14 07:16:43,829 | INFO     | --------------------------------------------------
[2023-10-14 01:17:04] 2023-10-14 07:16:43,829 | INFO     | 
[2023-10-14 01:17:04] 2023-10-14 07:16:43,829 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/15
[2023-10-14 01:17:04] 2023-10-14 07:16:43,844 | INFO     | queue jobs had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,844 | INFO     | queue payloads had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue data_in had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue data_out had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | queue completed_jobids has 1 job(s)
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | queue messages had 0 job(s) [purged]
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | job 5989667779 has completed (purged errors)
[2023-10-14 01:17:04] 2023-10-14 07:16:43,846 | INFO     | overall cleanup function is called
[2023-10-14 01:17:04] 2023-10-14 07:16:44,852 | INFO     | --- collectZombieJob: --- 10, [2375344]
[2023-10-14 01:17:04] 2023-10-14 07:16:44,852 | INFO     | zombie collector waiting for pid 2375344
[2023-10-14 01:17:04] 2023-10-14 07:16:44,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-10-14 01:17:04] 2023-10-14 07:16:45,856 | INFO     | collected zombie processes
[2023-10-14 01:17:04] 2023-10-14 07:16:45,856 | INFO     | will now attempt to kill all subprocesses of pid=2375344
[2023-10-14 01:17:04] 2023-10-14 07:16:45,917 | INFO     | process IDs to be killed: [2375344] (in reverse order)
[2023-10-14 01:17:04] 2023-10-14 07:16:45,960 | WARNING  | found no corresponding commands to process id(s)
[2023-10-14 01:17:04] 2023-10-14 07:16:45,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-10-14 01:17:04] 2023-10-14 07:16:45,964 | INFO     | did not find any defunct processes belonging to 2375344
[2023-10-14 01:17:04] 2023-10-14 07:16:45,967 | INFO     | did not find any defunct processes belonging to 2375344
[2023-10-14 01:17:04] 2023-10-14 07:16:45,967 | INFO     | ready for new job
[2023-10-14 01:17:04] 2023-10-14 07:16:45,967 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-10-14 01:17:04] 2023-10-14 07:16:45,968 | INFO     | **************************************
[2023-10-14 01:17:04] 2023-10-14 07:16:45,968 | INFO     | ***  PanDA Pilot version 3.6.9.10  ***
[2023-10-14 01:17:04] 2023-10-14 07:16:45,968 | INFO     | **************************************
[2023-10-14 01:17:04] 2023-10-14 07:16:45,968 | INFO     | 
[2023-10-14 01:17:04] 2023-10-14 07:16:45,989 | INFO     | architecture information:
[2023-10-14 01:17:04] 2023-10-14 07:16:45,990 | INFO     | executing command: cat /etc/os-release
[2023-10-14 01:17:04] 2023-10-14 07:16:46,003 | INFO     | cat /etc/os-release:
[2023-10-14 01:17:04] NAME="CentOS Linux"
[2023-10-14 01:17:04] VERSION="7 (Core)"
[2023-10-14 01:17:04] ID="centos"
[2023-10-14 01:17:04] ID_LIKE="rhel fedora"
[2023-10-14 01:17:04] VERSION_ID="7"
[2023-10-14 01:17:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-10-14 01:17:04] ANSI_COLOR="0;31"
[2023-10-14 01:17:04] CPE_NAME="cpe:/o:centos:centos:7"
[2023-10-14 01:17:04] HOME_URL="https://www.centos.org/"
[2023-10-14 01:17:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-10-14 01:17:04] 
[2023-10-14 01:17:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-10-14 01:17:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-10-14 01:17:04] REDHAT_SUPPORT_PRODUCT="centos"
[2023-10-14 01:17:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-10-14 01:17:04] 
[2023-10-14 01:17:04] 2023-10-14 07:16:46,003 | INFO     | **************************************
[2023-10-14 01:17:04] 2023-10-14 07:16:46,506 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/15
[2023-10-14 01:17:04] 2023-10-14 07:16:46,517 | INFO     | sufficient remaining disk space (212009484288 B)
[2023-10-14 01:17:04] 2023-10-14 07:16:46,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-10-14 01:17:04] 2023-10-14 07:16:46,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-10-14 01:17:04] 2023-10-14 07:16:46,517 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-10-14 01:17:04] 2023-10-14 07:16:46,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-10-14 01:17:04] 2023-10-14 07:16:46,518 | INFO     | found 0 job(s) in 20 queues
[2023-10-14 01:17:04] 2023-10-14 07:16:46,518 | INFO     | aborting loop
[2023-10-14 01:17:04] 2023-10-14 07:16:46,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-10-14 01:17:04] 2023-10-14 07:16:46,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-10-14 01:17:04] 2023-10-14 07:16:46,827 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-10-14 01:17:04] 2023-10-14 07:16:47,520 | INFO     | [job] job monitor thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:47,521 | INFO     | [job] retrieve thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:47,668 | INFO     | [payload] validate_post thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:47,833 | INFO     | [job] validate thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:47,848 | INFO     | [payload] control thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:47,856 | INFO     | [job] control thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:47,948 | INFO     | [job] create_data_payload thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:48,160 | INFO     | [payload] validate_pre thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:48,360 | INFO     | [data] control thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:48,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-10-14 01:17:04] 2023-10-14 07:16:48,536 | INFO     | [payload] failed_post thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:48,783 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-10-14 01:17:04] 2023-10-14 07:16:48,832 | INFO     | [data] copytool_out thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:48,832 | INFO     | [data] copytool_in thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:48,980 | INFO     | [payload] execute_payloads thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:49,472 | INFO     | [job] queue monitor thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:52,788 | INFO     | [data] queue_monitor thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:57,460 | INFO     | job.realtimelogging is not enabled
[2023-10-14 01:17:04] 2023-10-14 07:16:58,464 | INFO     | [payload] run_realtimelog thread has finished
[2023-10-14 01:17:04] 2023-10-14 07:16:59,296 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139886752384832)>', '<ExcThread(monitor, started 139886321452800)>']
[2023-10-14 01:17:04] 2023-10-14 07:16:59,564 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-10-14 01:17:04] 2023-10-14 07:16:59,564 | INFO     | [monitor] control thread has ended
[2023-10-14 01:17:04] 2023-10-14 07:17:04,320 | INFO     | end of generic workflow (traces error code: 0)
[2023-10-14 01:17:04] 2023-10-14 07:17:04,321 | INFO     | traces error code: 0
[2023-10-14 01:17:04] 2023-10-14 07:17:04,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-10-14 01:17:04] 2023-10-14 07:17:04,391 [wrapper] ==== pilot stdout END ====
[2023-10-14 01:17:04] 2023-10-14 07:17:04,393 [wrapper] ==== wrapper stdout RESUME ====
[2023-10-14 01:17:04] 2023-10-14 07:17:04,395 [wrapper] pilotpid: 2367998
[2023-10-14 01:17:04] 2023-10-14 07:17:04,397 [wrapper] Pilot exit status: 0
[2023-10-14 01:17:04] 2023-10-14 07:17:04,411 [wrapper] pandaids: 5989667779
[2023-10-14 01:17:04] 2023-10-14 07:17:04,417 [wrapper] apfmon messages muted
[2023-10-14 01:17:04] 2023-10-14 07:17:04,421 [wrapper] Test setup, not cleaning
[2023-10-14 01:17:04] 2023-10-14 07:17:04,425 [wrapper] ==== wrapper stdout END ====
[2023-10-14 01:17:04] 2023-10-14 07:17:04,433 [wrapper] ==== wrapper stderr END ====
[2023-10-14 01:17:04] 2023-10-14 07:17:04,450 [wrapper] wrapperexiting ec=0, duration=1590
[2023-10-14 01:17:04] 2023-10-14 07:17:04,458 [wrapper] apfmon messages muted
[2023-10-14 01:17:04]  *** Error codes and diagnostics ***
[2023-10-14 01:17:04]     "exeErrorCode": 0,
[2023-10-14 01:17:04]     "exeErrorDiag": "",
[2023-10-14 01:17:04]     "pilotErrorCode": 0,
[2023-10-14 01:17:04]     "pilotErrorDiag": "",
[2023-10-14 01:17:04]  *** Listing of results directory ***
[2023-10-14 01:17:04] total 45360
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc     4388 Oct 14 00:40 queuedata.json
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc   433413 Oct 14 00:40 pilot3.tar.gz
[2023-10-14 01:17:04] -rwx------ 1 boinc boinc    27439 Oct 14 00:42 runpilot2-wrapper.sh
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc      107 Oct 14 00:50 wrapper_26015_x86_64-pc-linux-gnu
[2023-10-14 01:17:04] -rwxr-xr-x 1 boinc boinc     7986 Oct 14 00:50 run_atlas
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc      112 Oct 14 00:50 job.xml
[2023-10-14 01:17:04] -rw-r--r-- 2 boinc boinc    17600 Oct 14 00:50 start_atlas.sh
[2023-10-14 01:17:04] drwxrwx--x 2 boinc boinc     4096 Oct 14 00:50 shared
[2023-10-14 01:17:04] -rw-r--r-- 2 boinc boinc   444622 Oct 14 00:50 input.tar.gz
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc     9119 Oct 14 00:50 init_data.xml
[2023-10-14 01:17:04] -rw-r--r-- 2 boinc boinc 38705932 Oct 14 00:50 EVNT.04972714._000036.pool.root.1
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc        0 Oct 14 00:50 boinc_lockfile
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc     2676 Oct 14 00:50 pandaJob.out
[2023-10-14 01:17:04] -rw------- 1 boinc boinc      424 Oct 14 00:50 setup.sh.local
[2023-10-14 01:17:04] -rw------- 1 boinc boinc  1361563 Oct 14 00:51 cric_ddmendpoints.json
[2023-10-14 01:17:04] -rw------- 1 boinc boinc   993144 Oct 14 00:51 agis_schedconf.cvmfs.json
[2023-10-14 01:17:04] drwx------ 4 boinc boinc     4096 Oct 14 00:52 pilot3
[2023-10-14 01:17:04] -rw------- 1 boinc boinc  1771764 Oct 14 01:10 output.1.85b5e274-bb33-4785-87af-0947b6d3de57_7651.pool.root
[2023-10-14 01:17:04] -rw------- 1 boinc boinc     1025 Oct 14 01:10 memory_monitor_summary.json
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc      533 Oct 14 01:10 boinc_task_state.xml
[2023-10-14 01:17:04] -rw------- 1 boinc boinc   177095 Oct 14 01:13 85b5e274-bb33-4785-87af-0947b6d3de57_7651.1.job.log.tgz
[2023-10-14 01:17:04] -rw------- 1 boinc boinc     7098 Oct 14 01:16 heartbeat.json
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc       25 Oct 14 01:16 wrapper_checkpoint.txt
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc     8192 Oct 14 01:16 boinc_mmap_file
[2023-10-14 01:17:04] -rw------- 1 boinc boinc     4105 Oct 14 01:17 pilotlog.txt
[2023-10-14 01:17:04] -rw------- 1 boinc boinc   189211 Oct 14 01:17 85b5e274-bb33-4785-87af-0947b6d3de57_7651.1.job.log
[2023-10-14 01:17:04] -rw------- 1 boinc boinc      460 Oct 14 01:17 output.list
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc      744 Oct 14 01:17 runtime_log
[2023-10-14 01:17:04] -rw------- 1 boinc boinc  2160640 Oct 14 01:17 result.tar.gz
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc    11924 Oct 14 01:17 runtime_log.err
[2023-10-14 01:17:04] -rw------- 1 boinc boinc      631 Oct 14 01:17 lFjNDm7WnB4n7Olcko1bjSoqABFKDmABFKDm7AsVDm4zSKDmDYJM0n.diag
[2023-10-14 01:17:04] -rw-r--r-- 1 boinc boinc    23140 Oct 14 01:17 stderr.txt
[2023-10-14 01:17:04] HITS file was successfully produced:
[2023-10-14 01:17:04] -rw------- 1 boinc boinc 1771764 Oct 14 01:10 shared/HITS.pool.root.1
[2023-10-14 01:17:04]  *** Contents of shared directory: ***
[2023-10-14 01:17:04] total 42100
[2023-10-14 01:17:04] -rw-r--r-- 2 boinc boinc    17600 Oct 14 00:50 start_atlas.sh
[2023-10-14 01:17:04] -rw-r--r-- 2 boinc boinc   444622 Oct 14 00:50 input.tar.gz
[2023-10-14 01:17:04] -rw-r--r-- 2 boinc boinc 38705932 Oct 14 00:50 ATLAS.root_0
[2023-10-14 01:17:04] -rw------- 1 boinc boinc  1771764 Oct 14 01:10 HITS.pool.root.1
[2023-10-14 01:17:04] -rw------- 1 boinc boinc  2160640 Oct 14 01:17 result.tar.gz
01:17:06 (2364221): run_atlas exited; CPU time 278.849980
01:17:06 (2364221): called boinc_finish(0)

</stderr_txt>
]]>

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