Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
12:20:57 (2934057): wrapper (7.7.26015): starting
12:20:57 (2934057): wrapper: running run_atlas (--nthreads 1)
[2023-10-15 12:20:57] Arguments: --nthreads 1
[2023-10-15 12:20:57] Threads: 1
[2023-10-15 12:20:57] Checking for CVMFS
[2023-10-15 12:20:58] Probing /cvmfs/atlas.cern.ch... OK
[2023-10-15 12:21:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-10-15 12:21:00] Running cvmfs_config stat atlas.cern.ch
[2023-10-15 12:21:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-10-15 12:21:00] 2.11.0.0 2934196 0 25080 124792 3 1 3666372 4096000 0 130560 0 0 0.000 960 974 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2023-10-15 12:21:00] CVMFS is ok
[2023-10-15 12:21:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2023-10-15 12:21:00] Small home clusters do not require a local http proxy but it is suggested if
[2023-10-15 12:21:00] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2023-10-15 12:21:00] Further information can be found at the LHC@home message board.
[2023-10-15 12:21:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-10-15 12:21:00] Checking for apptainer binary...
[2023-10-15 12:21:00] Using apptainer found in PATH at /usr/local/bin/apptainer
[2023-10-15 12:21:00] Running /usr/local/bin/apptainer --version
[2023-10-15 12:21:00] apptainer version 1.2.3+286-g3ac6f0cb6
[2023-10-15 12:21:00] Checking apptainer works with /usr/local/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-10-15 12:21:01] T5810
[2023-10-15 12:21:01] apptainer works
[2023-10-15 12:21:01] Starting ATLAS job with PandaID=5990604963
[2023-10-15 12:21:01] Running command: /usr/local/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-10-15 12:45:15]  *** The last 200 lines of the pilot log: ***
[2023-10-15 12:45:15] 2023-10-15 18:44:07,835 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:10,336 | INFO     | monitor loop #217: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:10,336 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:12,839 | INFO     | monitor loop #218: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:12,839 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:15,340 | INFO     | monitor loop #219: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:15,340 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:17,842 | INFO     | monitor loop #220: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:17,842 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:20,344 | INFO     | monitor loop #221: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:20,344 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:22,847 | INFO     | monitor loop #222: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:22,847 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:25,348 | INFO     | monitor loop #223: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:25,348 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:27,851 | INFO     | monitor loop #224: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:27,851 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:30,352 | INFO     | monitor loop #225: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:30,352 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:32,855 | INFO     | monitor loop #226: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:32,855 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:35,356 | INFO     | monitor loop #227: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:35,356 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:37,859 | INFO     | monitor loop #228: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:37,859 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:40,360 | INFO     | monitor loop #229: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:40,360 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:42,863 | INFO     | monitor loop #230: job 0:5990604963 is in state 'stageout'
[2023-10-15 12:45:15] 2023-10-15 18:44:42,863 | WARNING  | aborting job monitor tasks since payload process 2946249 is not running
[2023-10-15 12:45:15] 2023-10-15 18:44:43,060 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-10-15 12:45:15] 2023-10-15 18:44:43,950 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-10-15 12:45:15] 2023-10-15 18:44:43,950 | WARNING  | cache file=/var/lib/boinc-client/slots/4/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/4/agis
[2023-10-15 12:45:15] 2023-10-15 18:44:44,007 | INFO     | transferring file c639b388-069e-462c-92df-be4227c111f3_56395.1.job.log.tgz from /var/lib/boinc-client/slots/4/PanDA_Pilot-5990604963/c639b388-069e-462c-92df-be4227
[2023-10-15 12:45:15] 2023-10-15 18:44:44,007 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-5990604963/c639b388-069e-462c-92df-be4227c111f3_56395.1.job.log.tgz /var/lib/boinc-cli
[2023-10-15 12:45:15] 2023-10-15 18:44:44,027 | INFO     | Adding to output.list: c639b388-069e-462c-92df-be4227c111f3_56395.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/49/d1/c639b388-069e-
[2023-10-15 12:45:15] 2023-10-15 18:44:44,027 | INFO     | summary of transferred files:
[2023-10-15 12:45:15] 2023-10-15 18:44:44,027 | INFO     |  -- lfn=c639b388-069e-462c-92df-be4227c111f3_56395.1.job.log.tgz, status_code=0, status=transferred
[2023-10-15 12:45:15] 2023-10-15 18:44:44,028 | INFO     | stage-out finished correctly
[2023-10-15 12:45:15] 2023-10-15 18:44:45,364 | INFO     | monitor loop #231: job 0:5990604963 is in state 'finished'
[2023-10-15 12:45:15] 2023-10-15 18:44:45,364 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-15 12:45:15] 2023-10-15 18:44:45,808 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-10-15 12:45:15] 2023-10-15 18:44:45,892 | INFO     | job 5990604963 has state=finished
[2023-10-15 12:45:15] 2023-10-15 18:44:45,892 | INFO     | preparing for final server update for job 5990604963 in state='finished'
[2023-10-15 12:45:15] 2023-10-15 18:44:45,893 | INFO     | this job has now completed (state=finished)
[2023-10-15 12:45:15] 2023-10-15 18:44:45,893 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-10-15 12:45:15] 2023-10-15 18:44:45,893 | INFO     | job 5990604963 has finished - writing final server update
[2023-10-15 12:45:15] 2023-10-15 18:44:45,893 | INFO     | total number of processed events: 2 (read)
[2023-10-15 12:45:15] 2023-10-15 18:44:45,913 | INFO     | executing command: lscpu
[2023-10-15 12:45:15] 2023-10-15 18:44:45,933 | INFO     | found 14 cores (14 cores per socket, 1 sockets)
[2023-10-15 12:45:15] 2023-10-15 18:44:45,934 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-10-15 12:45:15] 2023-10-15 18:44:45,977 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-10-15 12:45:15] 2023-10-15 18:44:47,867 | INFO     | monitor loop #232: job 0:5990604963 is in state 'finished'
[2023-10-15 12:45:15] 2023-10-15 18:44:47,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-15 12:45:15] 2023-10-15 18:44:50,368 | INFO     | monitor loop #233: job 0:5990604963 is in state 'finished'
[2023-10-15 12:45:15] 2023-10-15 18:44:50,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-15 12:45:15] 2023-10-15 18:44:52,871 | INFO     | monitor loop #234: job 0:5990604963 is in state 'finished'
[2023-10-15 12:45:15] 2023-10-15 18:44:52,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-10-15 12:45:15] 2023-10-15 18:44:55,204 | INFO     | CPU arch script returned: x86-64-v3
[2023-10-15 12:45:15] 2023-10-15 18:44:55,204 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-5990604963/memory_monitor_summary.json (trf name=prmon)
[2023-10-15 12:45:15] 2023-10-15 18:44:55,205 | INFO     | extracted standard info from prmon json
[2023-10-15 12:45:15] 2023-10-15 18:44:55,205 | INFO     | extracted standard memory fields from prmon json
[2023-10-15 12:45:15] 2023-10-15 18:44:55,206 | WARNING  | wrong length of table data, x=[1697394666.0, 1697394727.0, 1697394788.0, 1697394849.0, 1697394910.0], y=[1010584.0, 1021504.0, 1115056.0, 1161000.0, 1495084.0] (mu
[2023-10-15 12:45:15] 2023-10-15 18:44:55,207 | INFO     | ..............................
[2023-10-15 12:45:15] 2023-10-15 18:44:55,207 | INFO     | . Timing measurements:
[2023-10-15 12:45:15] 2023-10-15 18:44:55,207 | INFO     | . get job = 80 s
[2023-10-15 12:45:15] 2023-10-15 18:44:55,207 | INFO     | . initial setup = 82 s
[2023-10-15 12:45:15] 2023-10-15 18:44:55,207 | INFO     | . payload setup = 13 s
[2023-10-15 12:45:15] 2023-10-15 18:44:55,207 | INFO     | . stage-in = 71 s
[2023-10-15 12:45:15] 2023-10-15 18:44:55,207 | INFO     | . payload execution = 726 s
[2023-10-15 12:45:15] 2023-10-15 18:44:55,208 | INFO     | . stage-out = 404 s
[2023-10-15 12:45:15] 2023-10-15 18:44:55,208 | INFO     | . log creation = 0 s
[2023-10-15 12:45:15] 2023-10-15 18:44:55,208 | INFO     | ..............................
[2023-10-15 12:45:15] 2023-10-15 18:44:55,292 | INFO     | 
[2023-10-15 12:45:15] 2023-10-15 18:44:55,292 | INFO     | job summary report
[2023-10-15 12:45:15] 2023-10-15 18:44:55,292 | INFO     | --------------------------------------------------
[2023-10-15 12:45:15] 2023-10-15 18:44:55,292 | INFO     | PanDA job id: 5990604963
[2023-10-15 12:45:15] 2023-10-15 18:44:55,292 | INFO     | task id: NULL
[2023-10-15 12:45:15] 2023-10-15 18:44:55,292 | INFO     | errors: (none)
[2023-10-15 12:45:15] 2023-10-15 18:44:55,292 | INFO     | status: LOG_TRANSFER = DONE 
[2023-10-15 12:45:15] 2023-10-15 18:44:55,292 | INFO     | pilot state: finished 
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | transexitcode: 0
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | exeerrorcode: 0
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | exeerrordiag: 
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | exitcode: 0
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | exitmsg: OK
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | cpuconsumptiontime: 237 s
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | nevents: 2
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | neventsw: 0
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | pid: 2946249
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | pgrp: 2946249
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | corecount: 1
[2023-10-15 12:45:15] 2023-10-15 18:44:55,293 | INFO     | event service: False
[2023-10-15 12:45:15] 2023-10-15 18:44:55,294 | INFO     | sizes: {0: 2435754, 1: 2435953, 12: 2436099, 22: 2436127, 33: 2436155, 43: 2436183, 54: 2436339, 65: 2436367, 75: 2436395, 83: 2436483, 86: 2436511, 743: 2458205, 
[2023-10-15 12:45:15] 2023-10-15 18:44:55,294 | INFO     | --------------------------------------------------
[2023-10-15 12:45:15] 2023-10-15 18:44:55,294 | INFO     | 
[2023-10-15 12:45:15] 2023-10-15 18:44:55,294 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2023-10-15 12:45:15] 2023-10-15 18:44:55,308 | INFO     | queue jobs had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,308 | INFO     | queue payloads had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,308 | INFO     | queue data_in had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,308 | INFO     | queue data_out had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,308 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,309 | INFO     | queue completed_jobids has 1 job(s)
[2023-10-15 12:45:15] 2023-10-15 18:44:55,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,310 | INFO     | queue messages had 0 job(s) [purged]
[2023-10-15 12:45:15] 2023-10-15 18:44:55,310 | INFO     | job 5990604963 has completed (purged errors)
[2023-10-15 12:45:15] 2023-10-15 18:44:55,310 | INFO     | overall cleanup function is called
[2023-10-15 12:45:15] 2023-10-15 18:44:56,316 | INFO     | --- collectZombieJob: --- 10, [2946249]
[2023-10-15 12:45:15] 2023-10-15 18:44:56,316 | INFO     | zombie collector waiting for pid 2946249
[2023-10-15 12:45:15] 2023-10-15 18:44:56,316 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-10-15 12:45:15] 2023-10-15 18:44:57,320 | INFO     | collected zombie processes
[2023-10-15 12:45:15] 2023-10-15 18:44:57,320 | INFO     | will now attempt to kill all subprocesses of pid=2946249
[2023-10-15 12:45:15] 2023-10-15 18:44:57,382 | INFO     | process IDs to be killed: [2946249] (in reverse order)
[2023-10-15 12:45:15] 2023-10-15 18:44:57,426 | WARNING  | found no corresponding commands to process id(s)
[2023-10-15 12:45:15] 2023-10-15 18:44:57,426 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-10-15 12:45:15] 2023-10-15 18:44:57,429 | INFO     | did not find any defunct processes belonging to 2946249
[2023-10-15 12:45:15] 2023-10-15 18:44:57,432 | INFO     | did not find any defunct processes belonging to 2946249
[2023-10-15 12:45:15] 2023-10-15 18:44:57,432 | INFO     | ready for new job
[2023-10-15 12:45:15] 2023-10-15 18:44:57,432 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-10-15 12:45:15] 2023-10-15 18:44:57,433 | INFO     | **************************************
[2023-10-15 12:45:15] 2023-10-15 18:44:57,433 | INFO     | ***  PanDA Pilot version 3.6.9.10  ***
[2023-10-15 12:45:15] 2023-10-15 18:44:57,433 | INFO     | **************************************
[2023-10-15 12:45:15] 2023-10-15 18:44:57,433 | INFO     | 
[2023-10-15 12:45:15] 2023-10-15 18:44:57,453 | INFO     | architecture information:
[2023-10-15 12:45:15] 2023-10-15 18:44:57,460 | INFO     | executing command: cat /etc/os-release
[2023-10-15 12:45:15] 2023-10-15 18:44:57,471 | INFO     | cat /etc/os-release:
[2023-10-15 12:45:15] NAME="CentOS Linux"
[2023-10-15 12:45:15] VERSION="7 (Core)"
[2023-10-15 12:45:15] ID="centos"
[2023-10-15 12:45:15] ID_LIKE="rhel fedora"
[2023-10-15 12:45:15] VERSION_ID="7"
[2023-10-15 12:45:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-10-15 12:45:15] ANSI_COLOR="0;31"
[2023-10-15 12:45:15] CPE_NAME="cpe:/o:centos:centos:7"
[2023-10-15 12:45:15] HOME_URL="https://www.centos.org/"
[2023-10-15 12:45:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-10-15 12:45:15] 
[2023-10-15 12:45:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-10-15 12:45:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-10-15 12:45:15] REDHAT_SUPPORT_PRODUCT="centos"
[2023-10-15 12:45:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-10-15 12:45:15] 
[2023-10-15 12:45:15] 2023-10-15 18:44:57,471 | INFO     | **************************************
[2023-10-15 12:45:15] 2023-10-15 18:44:57,972 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2023-10-15 12:45:15] 2023-10-15 18:44:57,985 | INFO     | sufficient remaining disk space (210754338816 B)
[2023-10-15 12:45:15] 2023-10-15 18:44:57,985 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-10-15 12:45:15] 2023-10-15 18:44:57,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-10-15 12:45:15] 2023-10-15 18:44:57,986 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-10-15 12:45:15] 2023-10-15 18:44:58,328 | INFO     | found 0 job(s) in 20 queues
[2023-10-15 12:45:15] 2023-10-15 18:44:58,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-10-15 12:45:15] 2023-10-15 18:44:58,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-10-15 12:45:15] 2023-10-15 18:44:58,880 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-10-15 12:45:15] 2023-10-15 18:44:58,880 | INFO     | aborting loop
[2023-10-15 12:45:15] 2023-10-15 18:44:58,988 | INFO     | [job] retrieve thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,064 | INFO     | [payload] validate_post thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,112 | INFO     | [job] create_data_payload thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,216 | INFO     | [data] copytool_in thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,740 | INFO     | [payload] execute_payloads thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,748 | INFO     | [payload] validate_pre thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,876 | INFO     | [payload] control thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,884 | INFO     | [job] job monitor thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,900 | INFO     | [job] control thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:44:59,991 | INFO     | [data] copytool_out thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:45:00,048 | INFO     | [data] control thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:45:00,058 | INFO     | [payload] failed_post thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:45:00,300 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-10-15 12:45:15] 2023-10-15 18:45:00,456 | INFO     | [job] validate thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:45:00,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-10-15 12:45:15] 2023-10-15 18:45:01,304 | INFO     | [job] queue monitor thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:45:04,905 | INFO     | [data] queue_monitor thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:45:08,416 | INFO     | job.realtimelogging is not enabled
[2023-10-15 12:45:15] 2023-10-15 18:45:09,420 | INFO     | [payload] run_realtimelog thread has finished
[2023-10-15 12:45:15] 2023-10-15 18:45:10,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140708089476928)>', '<ExcThread(monitor, started 140707666839296)>']
[2023-10-15 12:45:15] 2023-10-15 18:45:11,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-10-15 12:45:15] 2023-10-15 18:45:11,381 | INFO     | [monitor] control thread has ended
[2023-10-15 12:45:15] 2023-10-15 18:45:15,612 | INFO     | end of generic workflow (traces error code: 0)
[2023-10-15 12:45:15] 2023-10-15 18:45:15,612 | INFO     | traces error code: 0
[2023-10-15 12:45:15] 2023-10-15 18:45:15,613 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-10-15 12:45:15] 2023-10-15 18:45:15,662 [wrapper] ==== pilot stdout END ====
[2023-10-15 12:45:15] 2023-10-15 18:45:15,669 [wrapper] ==== wrapper stdout RESUME ====
[2023-10-15 12:45:15] 2023-10-15 18:45:15,673 [wrapper] pilotpid: 2938229
[2023-10-15 12:45:15] 2023-10-15 18:45:15,675 [wrapper] Pilot exit status: 0
[2023-10-15 12:45:15] 2023-10-15 18:45:15,685 [wrapper] pandaids: 5990604963
[2023-10-15 12:45:15] 2023-10-15 18:45:15,693 [wrapper] apfmon messages muted
[2023-10-15 12:45:15] 2023-10-15 18:45:15,697 [wrapper] Test setup, not cleaning
[2023-10-15 12:45:15] 2023-10-15 18:45:15,701 [wrapper] ==== wrapper stdout END ====
[2023-10-15 12:45:15] 2023-10-15 18:45:15,703 [wrapper] ==== wrapper stderr END ====
[2023-10-15 12:45:15] 2023-10-15 18:45:15,715 [wrapper] wrapperexiting ec=0, duration=1454
[2023-10-15 12:45:15] 2023-10-15 18:45:15,724 [wrapper] apfmon messages muted
[2023-10-15 12:45:15]  *** Error codes and diagnostics ***
[2023-10-15 12:45:15]     "exeErrorCode": 0,
[2023-10-15 12:45:15]     "exeErrorDiag": "",
[2023-10-15 12:45:15]     "pilotErrorCode": 0,
[2023-10-15 12:45:15]     "pilotErrorDiag": "",
[2023-10-15 12:45:15]  *** Listing of results directory ***
[2023-10-15 12:45:15] total 42756
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc   433413 Oct 15 10:46 pilot3.tar.gz
[2023-10-15 12:45:15] -rwx------ 1 boinc boinc    27439 Oct 15 11:24 runpilot2-wrapper.sh
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc     4388 Oct 15 11:24 queuedata.json
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc      107 Oct 15 12:20 wrapper_26015_x86_64-pc-linux-gnu
[2023-10-15 12:45:15] -rwxr-xr-x 1 boinc boinc     7986 Oct 15 12:20 run_atlas
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc      112 Oct 15 12:20 job.xml
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc     9118 Oct 15 12:20 init_data.xml
[2023-10-15 12:45:15] -rw-r--r-- 2 boinc boinc 37498453 Oct 15 12:20 EVNT.04972714._000025.pool.root.1
[2023-10-15 12:45:15] -rw-r--r-- 2 boinc boinc    17604 Oct 15 12:20 start_atlas.sh
[2023-10-15 12:45:15] drwxrwx--x 2 boinc boinc     4096 Oct 15 12:20 shared
[2023-10-15 12:45:15] -rw-r--r-- 2 boinc boinc   444620 Oct 15 12:20 input.tar.gz
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc        0 Oct 15 12:20 boinc_lockfile
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc     2686 Oct 15 12:21 pandaJob.out
[2023-10-15 12:45:15] -rw------- 1 boinc boinc      424 Oct 15 12:21 setup.sh.local
[2023-10-15 12:45:15] -rw------- 1 boinc boinc  1361563 Oct 15 12:22 cric_ddmendpoints.json
[2023-10-15 12:45:15] -rw------- 1 boinc boinc   994093 Oct 15 12:22 agis_schedconf.cvmfs.json
[2023-10-15 12:45:15] drwx------ 4 boinc boinc     4096 Oct 15 12:24 pilot3
[2023-10-15 12:45:15] -rw------- 1 boinc boinc  1068122 Oct 15 12:37 output.1.c639b388-069e-462c-92df-be4227c111f3_56395.pool.root
[2023-10-15 12:45:15] -rw------- 1 boinc boinc     1021 Oct 15 12:37 memory_monitor_summary.json
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc      533 Oct 15 12:38 boinc_task_state.xml
[2023-10-15 12:45:15] -rw------- 1 boinc boinc   173849 Oct 15 12:40 c639b388-069e-462c-92df-be4227c111f3_56395.1.job.log.tgz
[2023-10-15 12:45:15] -rw------- 1 boinc boinc     7079 Oct 15 12:44 heartbeat.json
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc       25 Oct 15 12:45 wrapper_checkpoint.txt
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc     8192 Oct 15 12:45 boinc_mmap_file
[2023-10-15 12:45:15] -rw------- 1 boinc boinc     3981 Oct 15 12:45 pilotlog.txt
[2023-10-15 12:45:15] -rw------- 1 boinc boinc   172269 Oct 15 12:45 c639b388-069e-462c-92df-be4227c111f3_56395.1.job.log
[2023-10-15 12:45:15] -rw------- 1 boinc boinc      464 Oct 15 12:45 output.list
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc      748 Oct 15 12:45 runtime_log
[2023-10-15 12:45:15] -rw------- 1 boinc boinc  1433600 Oct 15 12:45 result.tar.gz
[2023-10-15 12:45:15] -rw------- 1 boinc boinc      631 Oct 15 12:45 xdHLDm91JC4n7Olcko1bjSoqABFKDmABFKDm7AsVDml6SKDmtAOTnm.diag
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc    11941 Oct 15 12:45 runtime_log.err
[2023-10-15 12:45:15] -rw-r--r-- 1 boinc boinc    23272 Oct 15 12:45 stderr.txt
[2023-10-15 12:45:15] HITS file was successfully produced:
[2023-10-15 12:45:15] -rw------- 1 boinc boinc 1068122 Oct 15 12:37 shared/HITS.pool.root.1
[2023-10-15 12:45:15]  *** Contents of shared directory: ***
[2023-10-15 12:45:15] total 39520
[2023-10-15 12:45:15] -rw-r--r-- 2 boinc boinc 37498453 Oct 15 12:20 ATLAS.root_0
[2023-10-15 12:45:15] -rw-r--r-- 2 boinc boinc    17604 Oct 15 12:20 start_atlas.sh
[2023-10-15 12:45:15] -rw-r--r-- 2 boinc boinc   444620 Oct 15 12:20 input.tar.gz
[2023-10-15 12:45:15] -rw------- 1 boinc boinc  1068122 Oct 15 12:37 HITS.pool.root.1
[2023-10-15 12:45:15] -rw------- 1 boinc boinc  1433600 Oct 15 12:45 result.tar.gz
12:45:17 (2934057): run_atlas exited; CPU time 239.227619
12:45:17 (2934057): called boinc_finish(0)

</stderr_txt>
]]>

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