Name 6peNDmPzuU4n7Olcko1bjSoqABFKDmABFKDmyeZQDmudHKDmwsOp1m_0
Workunit 2367346
Created 6 Dec 2023, 0:30:44 UTC
Sent 6 Dec 2023, 0:31:56 UTC
Report deadline 13 Dec 2023, 0:31:56 UTC
Received 6 Dec 2023, 2:39:13 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4008
Run time 39 min 49 sec
CPU time 23 min 10 sec
Validate state Valid
Credit 26.79
Device peak FLOPS 3.24 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.42 GB
Peak swap size 2.14 GB
Peak disk usage 79.68 MB

Stderr output

<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
02:42:03 (26135): wrapper (7.7.26015): starting
02:42:03 (26135): wrapper: running run_atlas (--nthreads 1)
[2023-12-06 02:42:03] Arguments: --nthreads 1
[2023-12-06 02:42:03] Threads: 1
[2023-12-06 02:42:03] Checking for CVMFS
[2023-12-06 02:42:22] Probing /cvmfs/atlas.cern.ch... OK
[2023-12-06 02:42:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-12-06 02:42:34] Running cvmfs_config stat atlas.cern.ch
[2023-12-06 02:42:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-12-06 02:42:35] 2.6.3.0 26383 0 28344 126688 3 1 2436609 2816000 0 65024 0 0 n/a 961 618 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1
[2023-12-06 02:42:35] CVMFS is ok
[2023-12-06 02:42:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-12-06 02:42:35] Checking for apptainer binary...
[2023-12-06 02:42:35] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2023-12-06 02:42:35] apptainer is not installed, using version from CVMFS
[2023-12-06 02:42:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-12-06 02:42:37] HPi7COS7
[2023-12-06 02:42:37] apptainer works
[2023-12-06 02:42:37] Starting ATLAS job with PandaID=6043084407
[2023-12-06 02:42:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-12-06 03:21:50]  *** The last 200 lines of the pilot log: ***
[2023-12-06 03:21:50] 2023-12-06 02:20:47,781 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:20:50,286 | INFO     | monitor loop #268: job 0:6043084407 is in state 'stageout'
[2023-12-06 03:21:50] 2023-12-06 02:20:50,287 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:20:52,791 | INFO     | monitor loop #269: job 0:6043084407 is in state 'stageout'
[2023-12-06 03:21:50] 2023-12-06 02:20:52,792 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:20:55,297 | INFO     | monitor loop #270: job 0:6043084407 is in state 'stageout'
[2023-12-06 03:21:50] 2023-12-06 02:20:55,298 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:20:57,803 | INFO     | monitor loop #271: job 0:6043084407 is in state 'stageout'
[2023-12-06 03:21:50] 2023-12-06 02:20:57,805 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:21:00,311 | INFO     | monitor loop #272: job 0:6043084407 is in state 'stageout'
[2023-12-06 03:21:50] 2023-12-06 02:21:00,312 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:21:02,816 | INFO     | monitor loop #273: job 0:6043084407 is in state 'stageout'
[2023-12-06 03:21:50] 2023-12-06 02:21:02,817 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:21:05,327 | INFO     | monitor loop #274: job 0:6043084407 is in state 'stageout'
[2023-12-06 03:21:50] 2023-12-06 02:21:05,327 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:21:07,836 | INFO     | monitor loop #275: job 0:6043084407 is in state 'stageout'
[2023-12-06 03:21:50] 2023-12-06 02:21:07,838 | WARNING  | aborting job monitor tasks since payload process 5111 is not running
[2023-12-06 03:21:50] 2023-12-06 02:21:09,561 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2023-12-06 03:21:50] 2023-12-06 02:21:09,674 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2023-12-06 03:21:50] 2023-12-06 02:21:09,674 | WARNING  | cache file=/var/lib/boinc/slots/0/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc/slots/0/agis_ddmendpoints.
[2023-12-06 03:21:50] 2023-12-06 02:21:09,784 | INFO     | transferring file 189b0a3e-41b4-48fe-bbd4-4337b3a6e0e1_60220.1.job.log.tgz from /var/lib/boinc/slots/0/PanDA_Pilot-6043084407/189b0a3e-41b4-48fe-bbd4-4337b3a6e0e1_
[2023-12-06 03:21:50] 2023-12-06 02:21:09,785 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6043084407/189b0a3e-41b4-48fe-bbd4-4337b3a6e0e1_60220.1.job.log.tgz /var/lib/boinc/slots/0/18
[2023-12-06 03:21:50] 2023-12-06 02:21:09,826 | INFO     | Adding to output.list: 189b0a3e-41b4-48fe-bbd4-4337b3a6e0e1_60220.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/b5/bc/189b0a3e-41b4-
[2023-12-06 03:21:50] 2023-12-06 02:21:09,827 | INFO     | summary of transferred files:
[2023-12-06 03:21:50] 2023-12-06 02:21:09,827 | INFO     |  -- lfn=189b0a3e-41b4-48fe-bbd4-4337b3a6e0e1_60220.1.job.log.tgz, status_code=0, status=transferred
[2023-12-06 03:21:50] 2023-12-06 02:21:09,827 | INFO     | stage-out finished correctly
[2023-12-06 03:21:50] 2023-12-06 02:21:10,357 | INFO     | monitor loop #276: job 0:6043084407 is in state 'finished'
[2023-12-06 03:21:50] 2023-12-06 02:21:10,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-12-06 03:21:50] 2023-12-06 02:21:12,863 | INFO     | monitor loop #277: job 0:6043084407 is in state 'finished'
[2023-12-06 03:21:50] 2023-12-06 02:21:12,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-12-06 03:21:50] 2023-12-06 02:21:13,040 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2023-12-06 03:21:50] 2023-12-06 02:21:15,373 | INFO     | monitor loop #278: job 0:6043084407 is in state 'finished'
[2023-12-06 03:21:50] 2023-12-06 02:21:15,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-12-06 03:21:50] 2023-12-06 02:21:15,686 | INFO     | job 6043084407 has state=finished
[2023-12-06 03:21:50] 2023-12-06 02:21:15,689 | INFO     | preparing for final server update for job 6043084407 in state='finished'
[2023-12-06 03:21:50] 2023-12-06 02:21:15,691 | INFO     | this job has now completed (state=finished)
[2023-12-06 03:21:50] 2023-12-06 02:21:15,691 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-12-06 03:21:50] 2023-12-06 02:21:15,691 | INFO     | job 6043084407 has finished - writing final server update
[2023-12-06 03:21:50] 2023-12-06 02:21:15,692 | INFO     | total number of processed events: 2 (read)
[2023-12-06 03:21:50] 2023-12-06 02:21:15,694 | INFO     | executing command: lscpu
[2023-12-06 03:21:50] 2023-12-06 02:21:15,727 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2023-12-06 03:21:50] 2023-12-06 02:21:15,728 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-12-06 03:21:50] 2023-12-06 02:21:15,784 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2023-12-06 03:21:50] 2023-12-06 02:21:16,515 | INFO     | 2263s have passed since pilot start
[2023-12-06 03:21:50] 2023-12-06 02:21:17,886 | INFO     | monitor loop #279: job 0:6043084407 is in state 'finished'
[2023-12-06 03:21:50] 2023-12-06 02:21:17,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-12-06 03:21:50] 2023-12-06 02:21:20,395 | INFO     | monitor loop #280: job 0:6043084407 is in state 'finished'
[2023-12-06 03:21:50] 2023-12-06 02:21:20,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-12-06 03:21:50] 2023-12-06 02:21:22,939 | INFO     | monitor loop #281: job 0:6043084407 is in state 'finished'
[2023-12-06 03:21:50] 2023-12-06 02:21:22,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-12-06 03:21:50] 2023-12-06 02:21:25,452 | INFO     | monitor loop #282: job 0:6043084407 is in state 'finished'
[2023-12-06 03:21:50] 2023-12-06 02:21:25,457 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2023-12-06 03:21:50] 2023-12-06 02:21:26,803 | INFO     | CPU arch script returned: x86-64-v2
[2023-12-06 03:21:50] 2023-12-06 02:21:26,808 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6043084407/memory_monitor_summary.json (trf name=prmon)
[2023-12-06 03:21:50] 2023-12-06 02:21:26,819 | INFO     | extracted standard info from prmon json
[2023-12-06 03:21:50] 2023-12-06 02:21:26,819 | INFO     | extracted standard memory fields from prmon json
[2023-12-06 03:21:50] 2023-12-06 02:21:26,822 | INFO     | fitting pss+swap vs Time
[2023-12-06 03:21:50] 2023-12-06 02:21:26,825 | INFO     | current memory leak: 339.47 B/s (using 20 data points, chi2=0.20)
[2023-12-06 03:21:50] 2023-12-06 02:21:26,826 | INFO     | ..............................
[2023-12-06 03:21:50] 2023-12-06 02:21:26,827 | INFO     | . Timing measurements:
[2023-12-06 03:21:50] 2023-12-06 02:21:26,827 | INFO     | . get job = 73 s
[2023-12-06 03:21:50] 2023-12-06 02:21:26,827 | INFO     | . initial setup = 57 s
[2023-12-06 03:21:50] 2023-12-06 02:21:26,827 | INFO     | . payload setup = 28 s
[2023-12-06 03:21:50] 2023-12-06 02:21:26,827 | INFO     | . stage-in = 83 s
[2023-12-06 03:21:50] 2023-12-06 02:21:26,828 | INFO     | . payload execution = 1628 s
[2023-12-06 03:21:50] 2023-12-06 02:21:26,828 | INFO     | . stage-out = 339 s
[2023-12-06 03:21:50] 2023-12-06 02:21:26,828 | INFO     | . log creation = 0 s
[2023-12-06 03:21:50] 2023-12-06 02:21:26,828 | INFO     | ..............................
[2023-12-06 03:21:50] 2023-12-06 02:21:27,333 | INFO     | 
[2023-12-06 03:21:50] 2023-12-06 02:21:27,333 | INFO     | job summary report
[2023-12-06 03:21:50] 2023-12-06 02:21:27,334 | INFO     | --------------------------------------------------
[2023-12-06 03:21:50] 2023-12-06 02:21:27,334 | INFO     | PanDA job id: 6043084407
[2023-12-06 03:21:50] 2023-12-06 02:21:27,334 | INFO     | task id: NULL
[2023-12-06 03:21:50] 2023-12-06 02:21:27,334 | INFO     | errors: (none)
[2023-12-06 03:21:50] 2023-12-06 02:21:27,334 | INFO     | status: LOG_TRANSFER = DONE 
[2023-12-06 03:21:50] 2023-12-06 02:21:27,334 | INFO     | pilot state: finished 
[2023-12-06 03:21:50] 2023-12-06 02:21:27,334 | INFO     | transexitcode: 0
[2023-12-06 03:21:50] 2023-12-06 02:21:27,334 | INFO     | exeerrorcode: 0
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | exeerrordiag: 
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | exitcode: 0
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | exitmsg: OK
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | cpuconsumptiontime: 1450 s
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | nevents: 2
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | neventsw: 0
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | pid: 5111
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | pgrp: 5111
[2023-12-06 03:21:50] 2023-12-06 02:21:27,335 | INFO     | corecount: 1
[2023-12-06 03:21:50] 2023-12-06 02:21:27,336 | INFO     | event service: False
[2023-12-06 03:21:50] 2023-12-06 02:21:27,336 | INFO     | sizes: {0: 2429940, 1: 2430139, 12: 2430139, 23: 2430313, 33: 2430341, 44: 2430369, 55: 2430525, 66: 2430553, 77: 2430581, 87: 2430637, 98: 2430665, 99: 2431033, 1
[2023-12-06 03:21:50] 2023-12-06 02:21:27,337 | INFO     | --------------------------------------------------
[2023-12-06 03:21:50] 2023-12-06 02:21:27,338 | INFO     | 
[2023-12-06 03:21:50] 2023-12-06 02:21:27,339 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2023-12-06 03:21:50] 2023-12-06 02:21:27,411 | INFO     | queue jobs had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,411 | INFO     | queue payloads had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,411 | INFO     | queue data_in had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,412 | INFO     | queue data_out had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue completed_jobids has 1 job(s)
[2023-12-06 03:21:50] 2023-12-06 02:21:27,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,414 | INFO     | queue messages had 0 job(s) [purged]
[2023-12-06 03:21:50] 2023-12-06 02:21:27,414 | INFO     | job 6043084407 has completed (purged errors)
[2023-12-06 03:21:50] 2023-12-06 02:21:27,415 | INFO     | overall cleanup function is called
[2023-12-06 03:21:50] 2023-12-06 02:21:28,425 | INFO     | --- collectZombieJob: --- 10, [5111]
[2023-12-06 03:21:50] 2023-12-06 02:21:28,426 | INFO     | zombie collector waiting for pid 5111
[2023-12-06 03:21:50] 2023-12-06 02:21:28,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-12-06 03:21:50] 2023-12-06 02:21:29,437 | INFO     | collected zombie processes
[2023-12-06 03:21:50] 2023-12-06 02:21:29,437 | INFO     | will now attempt to kill all subprocesses of pid=5111
[2023-12-06 03:21:50] 2023-12-06 02:21:29,643 | INFO     | process IDs to be killed: [5111] (in reverse order)
[2023-12-06 03:21:50] 2023-12-06 02:21:29,783 | WARNING  | found no corresponding commands to process id(s)
[2023-12-06 03:21:50] 2023-12-06 02:21:29,784 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-12-06 03:21:50] 2023-12-06 02:21:29,786 | INFO     | did not find any defunct processes belonging to 5111
[2023-12-06 03:21:50] 2023-12-06 02:21:29,789 | INFO     | did not find any defunct processes belonging to 5111
[2023-12-06 03:21:50] 2023-12-06 02:21:29,789 | INFO     | ready for new job
[2023-12-06 03:21:50] 2023-12-06 02:21:29,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-12-06 03:21:50] 2023-12-06 02:21:29,791 | INFO     | **************************************
[2023-12-06 03:21:50] 2023-12-06 02:21:29,791 | INFO     | ***  PanDA Pilot version 3.7.0.36  ***
[2023-12-06 03:21:50] 2023-12-06 02:21:29,791 | INFO     | **************************************
[2023-12-06 03:21:50] 2023-12-06 02:21:29,791 | INFO     | 
[2023-12-06 03:21:50] 2023-12-06 02:21:29,791 | INFO     | pilot is running in a VM
[2023-12-06 03:21:50] 2023-12-06 02:21:29,791 | INFO     | architecture information:
[2023-12-06 03:21:50] 2023-12-06 02:21:29,792 | INFO     | executing command: cat /etc/os-release
[2023-12-06 03:21:50] 2023-12-06 02:21:29,812 | INFO     | cat /etc/os-release:
[2023-12-06 03:21:50] NAME="CentOS Linux"
[2023-12-06 03:21:50] VERSION="7 (Core)"
[2023-12-06 03:21:50] ID="centos"
[2023-12-06 03:21:50] ID_LIKE="rhel fedora"
[2023-12-06 03:21:50] VERSION_ID="7"
[2023-12-06 03:21:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2023-12-06 03:21:50] ANSI_COLOR="0;31"
[2023-12-06 03:21:50] CPE_NAME="cpe:/o:centos:centos:7"
[2023-12-06 03:21:50] HOME_URL="https://www.centos.org/"
[2023-12-06 03:21:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2023-12-06 03:21:50] 
[2023-12-06 03:21:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2023-12-06 03:21:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2023-12-06 03:21:50] REDHAT_SUPPORT_PRODUCT="centos"
[2023-12-06 03:21:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2023-12-06 03:21:50] 
[2023-12-06 03:21:50] 2023-12-06 02:21:29,812 | INFO     | **************************************
[2023-12-06 03:21:50] 2023-12-06 02:21:30,319 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2023-12-06 03:21:50] 2023-12-06 02:21:30,386 | INFO     | sufficient remaining disk space (11292114944 B)
[2023-12-06 03:21:50] 2023-12-06 02:21:30,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-12-06 03:21:50] 2023-12-06 02:21:30,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2023-12-06 03:21:50] 2023-12-06 02:21:30,387 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2023-12-06 03:21:50] 2023-12-06 02:21:30,387 | INFO     | found 0 job(s) in 20 queues
[2023-12-06 03:21:50] 2023-12-06 02:21:30,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2023-12-06 03:21:50] 2023-12-06 02:21:30,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2023-12-06 03:21:50] 2023-12-06 02:21:30,488 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2023-12-06 03:21:50] 2023-12-06 02:21:30,489 | WARNING  | cannot recover job monitoring - aborting pilot
[2023-12-06 03:21:50] 2023-12-06 02:21:30,490 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2023-12-06 03:21:50] 2023-12-06 02:21:30,491 | INFO     | will abort loop
[2023-12-06 03:21:50] 2023-12-06 02:21:30,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-12-06 03:21:50] 2023-12-06 02:21:31,394 | INFO     | [job] retrieve thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:31,432 | INFO     | [job] control thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:31,507 | INFO     | [job] job monitor thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:31,523 | INFO     | [job] create_data_payload thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:31,778 | INFO     | [payload] control thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,048 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-12-06 03:21:50] 2023-12-06 02:21:32,197 | INFO     | [payload] validate_post thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,361 | INFO     | [payload] validate_pre thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,367 | INFO     | [data] copytool_in thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,425 | INFO     | [data] control thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,571 | INFO     | [data] copytool_out thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,759 | INFO     | [job] validate thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,759 | INFO     | [payload] execute_payloads thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,778 | INFO     | [payload] failed_post thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:32,790 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-12-06 03:21:50] 2023-12-06 02:21:33,053 | INFO     | [job] queue monitor thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:36,799 | INFO     | [data] queue_monitor thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:41,339 | INFO     | job.realtimelogging is not enabled
[2023-12-06 03:21:50] 2023-12-06 02:21:42,342 | INFO     | [payload] run_realtimelog thread has finished
[2023-12-06 03:21:50] 2023-12-06 02:21:44,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758791190336)>', '<ExcThread(monitor, started 139758589171456)>']
[2023-12-06 03:21:50] 2023-12-06 02:21:44,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2023-12-06 03:21:50] 2023-12-06 02:21:44,509 | INFO     | [monitor] control thread has ended
[2023-12-06 03:21:50] 2023-12-06 02:21:49,108 | INFO     | end of generic workflow (traces error code: 0)
[2023-12-06 03:21:50] 2023-12-06 02:21:49,111 | INFO     | traces error code: 0
[2023-12-06 03:21:50] 2023-12-06 02:21:49,113 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2023-12-06 03:21:50] 2023-12-06 02:21:49,339 [wrapper] ==== pilot stdout END ====
[2023-12-06 03:21:50] 2023-12-06 02:21:49,362 [wrapper] ==== wrapper stdout RESUME ====
[2023-12-06 03:21:50] 2023-12-06 02:21:49,382 [wrapper] pilotpid: 30391
[2023-12-06 03:21:50] 2023-12-06 02:21:49,445 [wrapper] Pilot exit status: 0
[2023-12-06 03:21:50] 2023-12-06 02:21:49,525 [wrapper] pandaids: 6043084407
[2023-12-06 03:21:50] 2023-12-06 02:21:49,545 [wrapper] apfmon messages muted
[2023-12-06 03:21:50] 2023-12-06 02:21:49,559 [wrapper] Test setup, not cleaning
[2023-12-06 03:21:50] 2023-12-06 02:21:49,568 [wrapper] ==== wrapper stdout END ====
[2023-12-06 03:21:50] 2023-12-06 02:21:49,573 [wrapper] ==== wrapper stderr END ====
[2023-12-06 03:21:50] 2023-12-06 02:21:49,657 [wrapper] wrapperexiting ec=0, duration=2352
[2023-12-06 03:21:50] 2023-12-06 02:21:49,671 [wrapper] apfmon messages muted
[2023-12-06 03:21:50]  *** Error codes and diagnostics ***
[2023-12-06 03:21:50]     "exeErrorCode": 0,
[2023-12-06 03:21:50]     "exeErrorDiag": "",
[2023-12-06 03:21:50]     "pilotErrorCode": 0,
[2023-12-06 03:21:50]     "pilotErrorDiag": "",
[2023-12-06 03:21:50]  *** Listing of results directory ***
[2023-12-06 03:21:50] insgesamt 44756
[2023-12-06 03:21:50] -rwx------. 1 boinc boinc    27439  6. Dez 01:30 runpilot2-wrapper.sh
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc     4388  6. Dez 01:30 queuedata.json
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc   441289  6. Dez 01:30 pilot3.tar.gz
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc      107  6. Dez 02:42 wrapper_26015_x86_64-pc-linux-gnu
[2023-12-06 03:21:50] -rwxr-xr-x. 1 boinc boinc     7986  6. Dez 02:42 run_atlas
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc      112  6. Dez 02:42 job.xml
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc     6048  6. Dez 02:42 init_data.xml
[2023-12-06 03:21:50] -rw-r--r--. 2 boinc boinc 37965264  6. Dez 02:42 EVNT.04972714._000027.pool.root.1
[2023-12-06 03:21:50] -rw-r--r--. 2 boinc boinc    17618  6. Dez 02:42 start_atlas.sh
[2023-12-06 03:21:50] drwxrwx--x. 2 boinc boinc       68  6. Dez 02:42 shared
[2023-12-06 03:21:50] -rw-r--r--. 2 boinc boinc   452875  6. Dez 02:42 input.tar.gz
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc        0  6. Dez 02:42 boinc_lockfile
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc     2756  6. Dez 02:42 pandaJob.out
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc      424  6. Dez 02:42 setup.sh.local
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc   977753  6. Dez 02:43 agis_schedconf.cvmfs.json
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc  1358246  6. Dez 02:44 cric_ddmendpoints.json
[2023-12-06 03:21:50] drwx------. 4 boinc boinc     4096  6. Dez 02:45 pilot3
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc  1808620  6. Dez 03:15 output.1.189b0a3e-41b4-48fe-bbd4-4337b3a6e0e1_60220.pool.root
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc     1019  6. Dez 03:15 memory_monitor_summary.json
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc      534  6. Dez 03:15 boinc_task_state.xml
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc   167415  6. Dez 03:18 189b0a3e-41b4-48fe-bbd4-4337b3a6e0e1_60220.1.job.log.tgz
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc     8818  6. Dez 03:21 heartbeat.json
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc     8192  6. Dez 03:21 boinc_mmap_file
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc       26  6. Dez 03:21 wrapper_checkpoint.txt
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc     4344  6. Dez 03:21 pilotlog.txt
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc   232525  6. Dez 03:21 189b0a3e-41b4-48fe-bbd4-4337b3a6e0e1_60220.1.job.log
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc      464  6. Dez 03:21 output.list
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc      748  6. Dez 03:21 runtime_log
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc  2232320  6. Dez 03:21 result.tar.gz
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc    11856  6. Dez 03:21 runtime_log.err
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc      635  6. Dez 03:21 6peNDmPzuU4n7Olcko1bjSoqABFKDmABFKDmyeZQDmudHKDmwsOp1m.diag
[2023-12-06 03:21:50] -rw-r--r--. 1 boinc boinc    22706  6. Dez 03:21 stderr.txt
[2023-12-06 03:21:50] HITS file was successfully produced:
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc 1808620  6. Dez 03:15 shared/HITS.pool.root.1
[2023-12-06 03:21:50]  *** Contents of shared directory: ***
[2023-12-06 03:21:50] insgesamt 41488
[2023-12-06 03:21:50] -rw-r--r--. 2 boinc boinc 37965264  6. Dez 02:42 ATLAS.root_0
[2023-12-06 03:21:50] -rw-r--r--. 2 boinc boinc    17618  6. Dez 02:42 start_atlas.sh
[2023-12-06 03:21:50] -rw-r--r--. 2 boinc boinc   452875  6. Dez 02:42 input.tar.gz
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc  1808620  6. Dez 03:15 HITS.pool.root.1
[2023-12-06 03:21:50] -rw-------. 1 boinc boinc  2232320  6. Dez 03:21 result.tar.gz
03:21:51 (26135): run_atlas exited; CPU time 1390.266581
03:21:51 (26135): called boinc_finish(0)

</stderr_txt>
]]>


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