Name s1VNDmnEDb4n7Olcko1bjSoqABFKDmABFKDmyeZQDmRMIKDmIvgtQn_0
Workunit 2371454
Created 23 Dec 2023, 9:12:39 UTC
Sent 23 Dec 2023, 9:13:10 UTC
Report deadline 30 Dec 2023, 9:13:10 UTC
Received 23 Dec 2023, 10:08:47 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4501
Run time 22 min 22 sec
CPU time 11 min 54 sec
Validate state Valid
Credit 29.56
Device peak FLOPS 10.92 GFLOPS
Application version ATLAS Simulation v3.01 (vbox64_mt_mcore_atlas)
windows_x86_64
Peak working set size 90.00 MB
Peak swap size 107.59 MB
Peak disk usage 729.78 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2023-12-23 10:37:26 (22532): Detected: vboxwrapper 26206
2023-12-23 10:37:26 (22532): Detected: BOINC client v7.24.1
2023-12-23 10:37:26 (22532): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2023-12-23 10:37:26 (22532): Successfully copied 'init_data.xml' to the shared directory.
2023-12-23 10:37:27 (22532): Create VM. (boinc_3a2f58ac85c3a42b, slot#6)
2023-12-23 10:37:27 (22532): Setting Memory Size for VM. (4200MB)
2023-12-23 10:37:28 (22532): Setting CPU Count for VM. (2)
2023-12-23 10:37:28 (22532): Setting Chipset Options for VM.
2023-12-23 10:37:28 (22532): Setting Graphics Controller Options for VM.
2023-12-23 10:37:28 (22532): Setting Boot Options for VM.
2023-12-23 10:37:29 (22532): Setting Network Configuration for NAT.
2023-12-23 10:37:29 (22532): Enabling VM Network Access.
2023-12-23 10:37:29 (22532): Disabling USB Support for VM.
2023-12-23 10:37:29 (22532): Disabling COM Port Support for VM.
2023-12-23 10:37:30 (22532): Disabling LPT Port Support for VM.
2023-12-23 10:37:30 (22532): Disabling Audio Support for VM.
2023-12-23 10:37:30 (22532): Disabling Clipboard Support for VM.
2023-12-23 10:37:30 (22532): Disabling Drag and Drop Support for VM.
2023-12-23 10:37:31 (22532): Adding storage controller(s) to VM.
2023-12-23 10:37:31 (22532): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-12-23 10:37:32 (22532): Adding VirtualBox Guest Additions to VM.
2023-12-23 10:37:32 (22532): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-12-23 10:37:33 (22532): forwarding host port 57598 to guest port 80
2023-12-23 10:37:33 (22532): Enabling remote desktop for VM.
2023-12-23 10:37:33 (22532): Enabling shared directory for VM.
2023-12-23 10:37:34 (22532): Starting VM using VBoxManage interface. (boinc_3a2f58ac85c3a42b, slot#6)
2023-12-23 10:37:41 (22532): Successfully started VM. (PID = '19776')
2023-12-23 10:37:41 (22532): Reporting VM Process ID to BOINC.
2023-12-23 10:37:41 (22532): Guest Log: BIOS: VirtualBox 7.0.12
2023-12-23 10:37:41 (22532): Guest Log: CPUID EDX: 0x178bfbff
2023-12-23 10:37:41 (22532): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-12-23 10:37:41 (22532): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-12-23 10:37:41 (22532): VM state change detected. (old = 'poweredoff', new = 'running')
2023-12-23 10:37:41 (22532): Detected: Web Application Enabled (http://localhost:57598)
2023-12-23 10:37:41 (22532): Detected: Remote Desktop Enabled (localhost:57599)
2023-12-23 10:37:41 (22532): Preference change detected
2023-12-23 10:37:41 (22532): Setting CPU throttle for VM. (100%)
2023-12-23 10:37:42 (22532): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 240 seconds) or (Vbox_job.xml: 900 seconds))
2023-12-23 10:37:43 (22532): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-12-23 10:37:43 (22532): Guest Log: BIOS: Booting from Hard Disk...
2023-12-23 10:37:46 (22532): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-12-23 10:37:46 (22532): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-12-23 10:37:46 (22532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-12-23 10:37:51 (22532): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-12-23 10:37:51 (22532): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-12-23 10:37:56 (22532): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-12-23 10:37:56 (22532): Guest Log: 00:00:00.000241 main     Log opened 2023-12-23T10:37:54.581859000Z
2023-12-23 10:37:56 (22532): Guest Log: 00:00:00.000398 main     OS Product: Linux
2023-12-23 10:37:56 (22532): Guest Log: 00:00:00.000440 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-12-23 10:37:56 (22532): Guest Log: 00:00:00.000459 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-12-23 10:37:56 (22532): Guest Log: 00:00:00.000479 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-12-23 10:37:56 (22532): Guest Log: 00:00:00.000480 main     Process ID: 1261
2023-12-23 10:37:56 (22532): Guest Log: 00:00:00.000480 main     Package type: LINUX_64BITS_GENERIC
2023-12-23 10:37:56 (22532): Guest Log: 00:00:00.001082 main     5.2.32 r132073 started. Verbose level = 0
2023-12-23 10:37:57 (22532): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-12-23 10:37:57 (22532): Guest Log: [INFO] Mounting shared directory
2023-12-23 10:37:57 (22532): Guest Log: [INFO] Checking for init_data.xml
2023-12-23 10:38:00 (22532): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-12-23 10:38:00 (22532): Guest Log: [INFO] Detected branch: dev
2023-12-23 10:38:06 (22532): Guest Log: This is the dev version of the ATLAS job wrapper
2023-12-23 10:38:06 (22532): Guest Log: Copying input files
2023-12-23 10:38:06 (22532): Guest Log: Copied input files into RunAtlas.
2023-12-23 10:38:06 (22532): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-12-23 10:38:06 (22532): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-12-23 10:38:06 (22532): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-12-23 10:38:06 (22532): Guest Log: Further information can be found at the LHC@home message board.
2023-12-23 10:38:06 (22532): Guest Log: 00:00:10.008254 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 772 592 000ns (GuestNow=1 703 324 286 816 605 000 ns GuestLast=1 703 327 874 589 197 000 ns fSetTimeLastLoop=true )
2023-12-23 10:38:16 (22532): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-12-23 10:38:16 (22532): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-12-23 10:38:16 (22532): Guest Log: 2.6.3.0 1535 0 30020 127364 4 1 3116816 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2023-12-23 10:38:16 (22532): Guest Log: copied the webapp to /var/www
2023-12-23 10:38:16 (22532): Guest Log: ATHENA_PROC_NUMBER=2
2023-12-23 10:38:16 (22532): Guest Log: ATHENA_CORE_NUMBER=2
2023-12-23 10:38:16 (22532): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-12-23 10:38:16 (22532): Guest Log:  *** Starting ATLAS job. (PandaID=6058938873 taskID=NULL&cor) ***
2023-12-23 10:59:40 (22532): Guest Log:  *** Job finished ***
2023-12-23 10:59:40 (22532): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-12-23 10:59:40 (22532): Guest Log:  *** Error codes and diagnostics ***
2023-12-23 10:59:40 (22532): Guest Log:     "exeErrorCode": 0,
2023-12-23 10:59:40 (22532): Guest Log:     "exeErrorDiag": "",
2023-12-23 10:59:40 (22532): Guest Log:     "pilotErrorCode": 1305,
2023-12-23 10:59:40 (22532): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-12-23 09:53:50,431 CRITICAL Transform executor raised TransformValidationException: HITSMergeAthenaMP0 got a SIGSEGV signal (exit code 139)",
2023-12-23 10:59:40 (22532): Guest Log:  *** Listing of results directory ***
2023-12-23 10:59:40 (22532): Guest Log: total 4380
2023-12-23 10:59:40 (22532): Guest Log: -rw-r--r--. 1 atlas atlas  441289 Dec 23 08:53 pilot3.tar.gz
2023-12-23 10:59:40 (22532): Guest Log: -rwx------. 1 atlas atlas   27439 Dec 23 09:12 runpilot2-wrapper.sh
2023-12-23 10:59:40 (22532): Guest Log: -rw-r--r--. 1 atlas atlas    4388 Dec 23 09:12 queuedata.json
2023-12-23 10:59:40 (22532): Guest Log: -rwxr-xr-x. 1 atlas atlas    9234 Dec 23 09:38 init_data.xml
2023-12-23 10:59:40 (22532): Guest Log: -rwxr-xr-x. 1 atlas atlas  452884 Dec 23 09:38 input.tar.gz
2023-12-23 10:59:40 (22532): Guest Log: -rwxr-xr-x. 1 atlas atlas   17618 Dec 23 09:38 start_atlas.sh
2023-12-23 10:59:40 (22532): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Dec 23 09:38 EVNT.04972714._000038.pool.root.1 -> /data/./ATLAS.root_0
2023-12-23 10:59:40 (22532): Guest Log: -rw-r--r--. 1 atlas atlas    2756 Dec 23 09:38 pandaJob.out
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas     424 Dec 23 09:38 setup.sh.local
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas 1338505 Dec 23 09:39 cric_ddmendpoints.json
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas  983520 Dec 23 09:39 agis_schedconf.cvmfs.json
2023-12-23 10:59:40 (22532): Guest Log: drwx------. 4 atlas atlas    4096 Dec 23 09:41 pilot3
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas    1022 Dec 23 09:53 memory_monitor_summary.json
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas  402639 Dec 23 09:54 aad722d3-a335-4b19-91c2-abc4e7ff469b_45365.1.job.log.tgz
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas    8715 Dec 23 09:59 heartbeat.json
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas    4033 Dec 23 09:59 pilotlog.txt
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas  154930 Dec 23 09:59 aad722d3-a335-4b19-91c2-abc4e7ff469b_45365.1.job.log
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas     227 Dec 23 09:59 output.list
2023-12-23 10:59:40 (22532): Guest Log: -rw-r--r--. 1 atlas atlas     686 Dec 23 09:59 runtime_log
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas  573440 Dec 23 09:59 result.tar.gz
2023-12-23 10:59:40 (22532): Guest Log: -rw-------. 1 atlas atlas     637 Dec 23 09:59 s1VNDmnEDb4n7Olcko1bjSoqABFKDmABFKDmyeZQDmRMIKDmIvgtQn.diag
2023-12-23 10:59:40 (22532): Guest Log: -rw-r--r--. 1 atlas atlas   11359 Dec 23 09:59 runtime_log.err
2023-12-23 10:59:40 (22532): Guest Log: Looking for outputfile output.1.aad722d3-a335-4b19-91c2-abc4e7ff469b_45365.pool.root
2023-12-23 10:59:40 (22532): Guest Log: No HITS file was produced
2023-12-23 10:59:40 (22532): Guest Log: Successfully finished the ATLAS job!
2023-12-23 10:59:40 (22532): Guest Log: Copying the results back to the shared directory!
2023-12-23 10:59:40 (22532): Guest Log:  *** Contents of shared directory: ***
2023-12-23 10:59:40 (22532): Guest Log: total 37776
2023-12-23 10:59:40 (22532): Guest Log: -rwxrwxrwx. 1 root root 37620382 Dec 23 09:37 ATLAS.root_0
2023-12-23 10:59:40 (22532): Guest Log: -rwxrwxrwx. 1 root root     9234 Dec 23 09:37 init_data.xml
2023-12-23 10:59:40 (22532): Guest Log: -rwxrwxrwx. 1 root root   452884 Dec 23 09:13 input.tar.gz
2023-12-23 10:59:40 (22532): Guest Log: -rwxrwxrwx. 1 root root   573440 Dec 23 09:59 result.tar.gz
2023-12-23 10:59:40 (22532): Guest Log: -rwxrwxrwx. 1 root root    17618 Dec 23 09:13 start_atlas.sh
2023-12-23 10:59:40 (22532): Guest Log:  *** Success! Shutting down the machine. ***
2023-12-23 10:59:40 (22532): VM Completion File Detected.
2023-12-23 10:59:40 (22532): Powering off VM.
2023-12-23 10:59:41 (22532): Successfully stopped VM.
2023-12-23 10:59:41 (22532): Deregistering VM. (boinc_3a2f58ac85c3a42b, slot#6)
2023-12-23 10:59:41 (22532): Removing network bandwidth throttle group from VM.
2023-12-23 10:59:41 (22532): Removing VM from VirtualBox.
10:59:47 (22532): called boinc_finish(0)

</stderr_txt>
]]>


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