Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
23:42:49 (294721): wrapper (7.7.26015): starting
23:42:49 (294721): wrapper: running run_atlas (--nthreads 5)
[2024-02-07 23:42:49] Arguments: --nthreads 5
[2024-02-07 23:42:49] Threads: 5
[2024-02-07 23:42:49] Checking for CVMFS
[2024-02-07 23:42:49] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-07 23:42:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-07 23:42:49] Running cvmfs_config stat atlas.cern.ch
[2024-02-07 23:42:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-07 23:42:49] 2.11.2.0 206582 40 46260 129131 3 86 2704451 4096001 754 130560 0 244013 99.974 35422 3477 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-07 23:42:49] CVMFS is ok
[2024-02-07 23:42:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-07 23:42:49] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-07 23:42:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-07 23:42:49] Further information can be found at the LHC@home message board.
[2024-02-07 23:42:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-07 23:42:49] Checking for apptainer binary...
[2024-02-07 23:42:49] apptainer is not installed, using version from CVMFS
[2024-02-07 23:42:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-07 23:42:49] x32-kubuntu
[2024-02-07 23:42:49] apptainer works
[2024-02-07 23:42:49] Set ATHENA_PROC_NUMBER=5
[2024-02-07 23:42:49] Set ATHENA_CORE_NUMBER=5
[2024-02-07 23:42:49] Starting ATLAS job with PandaID=6102002358
[2024-02-07 23:42:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-07 23:58:21]  *** The last 200 lines of the pilot log: ***
[2024-02-07 23:58:21] 2024-02-08 04:57:20,502 | INFO     | monitor loop #143: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:20,502 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:23,005 | INFO     | monitor loop #144: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:23,005 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:25,507 | INFO     | monitor loop #145: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:25,508 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:28,010 | INFO     | monitor loop #146: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:28,011 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:30,514 | INFO     | monitor loop #147: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:30,514 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:33,017 | INFO     | monitor loop #148: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:33,017 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:35,520 | INFO     | monitor loop #149: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:35,520 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:38,023 | INFO     | monitor loop #150: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:38,023 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:38,798 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-07 23:58:21] 2024-02-08 04:57:39,204 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-07 23:58:21] 2024-02-08 04:57:39,204 | INFO     | will try again after 18s..
[2024-02-07 23:58:21] 2024-02-08 04:57:40,526 | INFO     | monitor loop #151: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:40,526 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:43,028 | INFO     | monitor loop #152: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:43,029 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:45,532 | INFO     | monitor loop #153: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:45,532 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:48,035 | INFO     | monitor loop #154: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:48,035 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:50,537 | INFO     | monitor loop #155: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:50,538 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:53,040 | INFO     | monitor loop #156: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:53,041 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:55,543 | INFO     | monitor loop #157: job 0:6102002358 is in state 'stageout'
[2024-02-07 23:58:21] 2024-02-08 04:57:55,544 | WARNING  | aborting job monitor tasks since payload process 322520 is not running
[2024-02-07 23:58:21] 2024-02-08 04:57:57,254 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-07 23:58:21] 2024-02-08 04:57:57,458 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-07 23:58:21] 2024-02-08 04:57:57,458 | WARNING  | cache file=/var/lib/boinc-client/slots/4/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/4/agis
[2024-02-07 23:58:21] 2024-02-08 04:57:57,489 | INFO     | transferring file 938f070b-3c0b-4bb6-a2ef-3a86f03d118c_43803.1.job.log.tgz from /var/lib/boinc-client/slots/4/PanDA_Pilot-6102002358/938f070b-3c0b-4bb6-a2ef-3a86f0
[2024-02-07 23:58:21] 2024-02-08 04:57:57,489 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6102002358/938f070b-3c0b-4bb6-a2ef-3a86f03d118c_43803.1.job.log.tgz /var/lib/boinc-cli
[2024-02-07 23:58:21] 2024-02-08 04:57:57,500 | INFO     | Adding to output.list: 938f070b-3c0b-4bb6-a2ef-3a86f03d118c_43803.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/89/6f/938f070b-3c0b-
[2024-02-07 23:58:21] 2024-02-08 04:57:57,501 | INFO     | summary of transferred files:
[2024-02-07 23:58:21] 2024-02-08 04:57:57,501 | INFO     |  -- lfn=938f070b-3c0b-4bb6-a2ef-3a86f03d118c_43803.1.job.log.tgz, status_code=0, status=transferred
[2024-02-07 23:58:21] 2024-02-08 04:57:57,501 | INFO     | stage-out finished correctly
[2024-02-07 23:58:21] 2024-02-08 04:57:58,046 | INFO     | monitor loop #158: job 0:6102002358 is in state 'finished'
[2024-02-07 23:58:21] 2024-02-08 04:57:58,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-07 23:58:21] 2024-02-08 04:57:59,848 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-07 23:58:21] 2024-02-08 04:57:59,882 | INFO     | job 6102002358 has state=finished
[2024-02-07 23:58:21] 2024-02-08 04:57:59,882 | INFO     | preparing for final server update for job 6102002358 in state='finished'
[2024-02-07 23:58:21] 2024-02-08 04:57:59,882 | INFO     | this job has now completed (state=finished)
[2024-02-07 23:58:21] 2024-02-08 04:57:59,882 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-07 23:58:21] 2024-02-08 04:57:59,882 | INFO     | job 6102002358 has finished - writing final server update
[2024-02-07 23:58:21] 2024-02-08 04:57:59,882 | INFO     | total number of processed events: 2 (read)
[2024-02-07 23:58:21] 2024-02-08 04:57:59,883 | INFO     | executing command: lscpu
[2024-02-07 23:58:21] 2024-02-08 04:57:59,899 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-07 23:58:21] 2024-02-08 04:57:59,899 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-07 23:58:21] 2024-02-08 04:57:59,915 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-07 23:58:21] 2024-02-08 04:58:00,549 | INFO     | monitor loop #159: job 0:6102002358 is in state 'finished'
[2024-02-07 23:58:21] 2024-02-08 04:58:00,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-07 23:58:21] 2024-02-08 04:58:01,750 | INFO     | CPU arch script returned: x86-64-v3
[2024-02-07 23:58:21] 2024-02-08 04:58:01,750 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6102002358/memory_monitor_summary.json (trf name=prmon)
[2024-02-07 23:58:21] 2024-02-08 04:58:01,750 | INFO     | extracted standard info from prmon json
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | extracted standard memory fields from prmon json
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | WARNING  | wrong length of table data, x=[1707367568.0, 1707367629.0, 1707367690.0, 1707367751.0, 1707367812.0, 1707367873.0, 1707367934.0], y=[1462.0, 731905.0, 829775.0, 87
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | ..............................
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | . Timing measurements:
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | . get job = 63 s
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | . initial setup = 49 s
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | . payload setup = 3 s
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | . stage-in = 69 s
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | . payload execution = 406 s
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | . stage-out = 301 s
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | . log creation = 0 s
[2024-02-07 23:58:21] 2024-02-08 04:58:01,751 | INFO     | ..............................
[2024-02-07 23:58:21] 2024-02-08 04:58:01,781 | INFO     | 
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | job summary report
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | --------------------------------------------------
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | PanDA job id: 6102002358
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | task id: NULL
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | errors: (none)
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | pilot state: finished 
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | transexitcode: 0
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | exeerrorcode: 0
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | exeerrordiag: 
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | exitcode: 0
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | exitmsg: OK
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | cpuconsumptiontime: 179 s
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | nevents: 2
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | neventsw: 0
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | pid: 322520
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | pgrp: 322520
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | corecount: 5
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | event service: False
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | sizes: {0: 2407192, 11: 2407338, 22: 2407366, 32: 2407394, 43: 2407422, 53: 2407450, 64: 2407606, 71: 2407722, 75: 2407750, 413: 2428576, 715: 2437640, 717: 243797
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | --------------------------------------------------
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | 
[2024-02-07 23:58:21] 2024-02-08 04:58:01,782 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-07 23:58:21] 2024-02-08 04:58:01,792 | INFO     | job 6102002358 has completed (purged errors)
[2024-02-07 23:58:21] 2024-02-08 04:58:01,793 | INFO     | overall cleanup function is called
[2024-02-07 23:58:21] 2024-02-08 04:58:02,799 | INFO     | --- collectZombieJob: --- 10, [322520]
[2024-02-07 23:58:21] 2024-02-08 04:58:02,800 | INFO     | zombie collector waiting for pid 322520
[2024-02-07 23:58:21] 2024-02-08 04:58:02,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-07 23:58:21] 2024-02-08 04:58:03,805 | INFO     | collected zombie processes
[2024-02-07 23:58:21] 2024-02-08 04:58:03,805 | INFO     | will now attempt to kill all subprocesses of pid=322520
[2024-02-07 23:58:21] 2024-02-08 04:58:03,845 | INFO     | process IDs to be killed: [322520] (in reverse order)
[2024-02-07 23:58:21] 2024-02-08 04:58:03,872 | WARNING  | found no corresponding commands to process id(s)
[2024-02-07 23:58:21] 2024-02-08 04:58:03,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-07 23:58:21] 2024-02-08 04:58:03,874 | INFO     | did not find any defunct processes belonging to 322520
[2024-02-07 23:58:21] 2024-02-08 04:58:03,876 | INFO     | did not find any defunct processes belonging to 322520
[2024-02-07 23:58:21] 2024-02-08 04:58:03,877 | INFO     | ready for new job
[2024-02-07 23:58:21] 2024-02-08 04:58:03,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-07 23:58:21] 2024-02-08 04:58:03,877 | INFO     | **************************************
[2024-02-07 23:58:21] 2024-02-08 04:58:03,877 | INFO     | ***  PanDA Pilot version 3.7.0.36  ***
[2024-02-07 23:58:21] 2024-02-08 04:58:03,877 | INFO     | **************************************
[2024-02-07 23:58:21] 2024-02-08 04:58:03,877 | INFO     | 
[2024-02-07 23:58:21] 2024-02-08 04:58:03,879 | INFO     | architecture information:
[2024-02-07 23:58:21] 2024-02-08 04:58:03,879 | INFO     | executing command: cat /etc/os-release
[2024-02-07 23:58:21] 2024-02-08 04:58:03,886 | INFO     | cat /etc/os-release:
[2024-02-07 23:58:21] NAME="CentOS Linux"
[2024-02-07 23:58:21] VERSION="7 (Core)"
[2024-02-07 23:58:21] ID="centos"
[2024-02-07 23:58:21] ID_LIKE="rhel fedora"
[2024-02-07 23:58:21] VERSION_ID="7"
[2024-02-07 23:58:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-07 23:58:21] ANSI_COLOR="0;31"
[2024-02-07 23:58:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-07 23:58:21] HOME_URL="https://www.centos.org/"
[2024-02-07 23:58:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-07 23:58:21] 
[2024-02-07 23:58:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-07 23:58:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-07 23:58:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-07 23:58:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-07 23:58:21] 
[2024-02-07 23:58:21] 2024-02-08 04:58:03,886 | INFO     | **************************************
[2024-02-07 23:58:21] 2024-02-08 04:58:04,389 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2024-02-07 23:58:21] 2024-02-08 04:58:04,397 | INFO     | sufficient remaining disk space (431540404224 B)
[2024-02-07 23:58:21] 2024-02-08 04:58:04,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-07 23:58:21] 2024-02-08 04:58:04,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-07 23:58:21] 2024-02-08 04:58:04,398 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-07 23:58:21] 2024-02-08 04:58:04,398 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-02-07 23:58:21] 2024-02-08 04:58:04,398 | INFO     | aborting loop
[2024-02-07 23:58:21] 2024-02-08 04:58:04,398 | INFO     | found 0 job(s) in 20 queues
[2024-02-07 23:58:21] 2024-02-08 04:58:04,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-07 23:58:21] 2024-02-08 04:58:04,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-07 23:58:21] 2024-02-08 04:58:05,403 | INFO     | [job] retrieve thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:05,403 | INFO     | [job] job monitor thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:05,550 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-07 23:58:21] 2024-02-08 04:58:05,601 | INFO     | [payload] control thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:05,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-07 23:58:21] 2024-02-08 04:58:06,011 | INFO     | [payload] validate_post thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:06,133 | INFO     | [payload] execute_payloads thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:06,483 | INFO     | [job] validate thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:06,501 | INFO     | [data] control thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:06,587 | INFO     | [job] control thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:06,597 | INFO     | [job] create_data_payload thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:06,618 | INFO     | [payload] validate_pre thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:06,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-07 23:58:21] 2024-02-08 04:58:06,834 | INFO     | [payload] failed_post thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:06,850 | INFO     | [data] copytool_in thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:07,555 | INFO     | [data] copytool_out thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:07,797 | INFO     | [job] queue monitor thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:09,892 | INFO     | [data] queue_monitor thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:15,075 | INFO     | job.realtimelogging is not enabled
[2024-02-07 23:58:21] 2024-02-08 04:58:16,080 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-07 23:58:21] 2024-02-08 04:58:16,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648721381184)>', '<ExcThread(monitor, started 140648216778496)>']
[2024-02-07 23:58:21] 2024-02-08 04:58:17,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-07 23:58:21] 2024-02-08 04:58:17,460 | INFO     | [monitor] control thread has ended
[2024-02-07 23:58:21] 2024-02-08 04:58:21,635 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-07 23:58:21] 2024-02-08 04:58:21,635 | INFO     | traces error code: 0
[2024-02-07 23:58:21] 2024-02-08 04:58:21,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-07 23:58:21] 2024-02-08 04:58:21,665 [wrapper] ==== pilot stdout END ====
[2024-02-07 23:58:21] 2024-02-08 04:58:21,667 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-07 23:58:21] 2024-02-08 04:58:21,669 [wrapper] pilotpid: 298463
[2024-02-07 23:58:21] 2024-02-08 04:58:21,670 [wrapper] Pilot exit status: 0
[2024-02-07 23:58:21] 2024-02-08 04:58:21,675 [wrapper] pandaids: 6102002358
[2024-02-07 23:58:21] 2024-02-08 04:58:21,691 [wrapper] cleanup: SIGTERM to supervisor_pilot  349551 298464
[2024-02-07 23:58:21] 2024-02-08 04:58:21,693 [wrapper] Test setup, not cleaning
[2024-02-07 23:58:21] 2024-02-08 04:58:21,694 [wrapper] ==== wrapper stdout END ====
[2024-02-07 23:58:21] 2024-02-08 04:58:21,695 [wrapper] ==== wrapper stderr END ====
[2024-02-07 23:58:21] 2024-02-08 04:58:21,698 [wrapper] apfmon messages muted
[2024-02-07 23:58:21]  *** Error codes and diagnostics ***
[2024-02-07 23:58:21]     "exeErrorCode": 0,
[2024-02-07 23:58:21]     "exeErrorDiag": "",
[2024-02-07 23:58:21]     "pilotErrorCode": 0,
[2024-02-07 23:58:21]     "pilotErrorDiag": "",
[2024-02-07 23:58:21]  *** Listing of results directory ***
[2024-02-07 23:58:21] total 43072
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc   441289 Feb  7 23:24 pilot3.tar.gz
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc     4388 Feb  7 23:40 queuedata.json
[2024-02-07 23:58:21] -rwx------ 1 boinc boinc    31343 Feb  7 23:42 runpilot2-wrapper.sh
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc      107 Feb  7 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-07 23:58:21] -rwxr-xr-x 1 boinc boinc     7986 Feb  7 23:42 run_atlas
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc      112 Feb  7 23:42 job.xml
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc     9517 Feb  7 23:42 init_data.xml
[2024-02-07 23:58:21] -rw-r--r-- 2 boinc boinc 36949600 Feb  7 23:42 EVNT.04972714._000039.pool.root.1
[2024-02-07 23:58:21] -rw-r--r-- 2 boinc boinc    17638 Feb  7 23:42 start_atlas.sh
[2024-02-07 23:58:21] drwxrwx--x 2 boinc boinc     4096 Feb  7 23:42 shared
[2024-02-07 23:58:21] -rw-r--r-- 2 boinc boinc   453819 Feb  7 23:42 input.tar.gz
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc        0 Feb  7 23:42 boinc_lockfile
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc     2752 Feb  7 23:42 pandaJob.out
[2024-02-07 23:58:21] -rw------- 1 boinc boinc      424 Feb  7 23:42 setup.sh.local
[2024-02-07 23:58:21] -rw------- 1 boinc boinc   960241 Feb  7 23:42 agis_schedconf.cvmfs.json
[2024-02-07 23:58:21] -rw------- 1 boinc boinc  1342081 Feb  7 23:43 cric_ddmendpoints.json
[2024-02-07 23:58:21] drwx------ 4 boinc boinc     4096 Feb  7 23:44 pilot3
[2024-02-07 23:58:21] -rw------- 1 boinc boinc  1577683 Feb  7 23:52 output.1.938f070b-3c0b-4bb6-a2ef-3a86f03d118c_43803.pool.root
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc      532 Feb  7 23:52 boinc_task_state.xml
[2024-02-07 23:58:21] -rw------- 1 boinc boinc     1000 Feb  7 23:52 memory_monitor_summary.json
[2024-02-07 23:58:21] -rw------- 1 boinc boinc   151267 Feb  7 23:55 938f070b-3c0b-4bb6-a2ef-3a86f03d118c_43803.1.job.log.tgz
[2024-02-07 23:58:21] -rw------- 1 boinc boinc     7333 Feb  7 23:58 heartbeat.json
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc       24 Feb  7 23:58 wrapper_checkpoint.txt
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc     8192 Feb  7 23:58 boinc_mmap_file
[2024-02-07 23:58:21] -rw------- 1 boinc boinc     4104 Feb  7 23:58 pilotlog.txt
[2024-02-07 23:58:21] -rw------- 1 boinc boinc   135424 Feb  7 23:58 938f070b-3c0b-4bb6-a2ef-3a86f03d118c_43803.1.job.log
[2024-02-07 23:58:21] -rw------- 1 boinc boinc      464 Feb  7 23:58 output.list
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc      748 Feb  7 23:58 runtime_log
[2024-02-07 23:58:21] -rw------- 1 boinc boinc  1884160 Feb  7 23:58 result.tar.gz
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc    12108 Feb  7 23:58 runtime_log.err
[2024-02-07 23:58:21] -rw------- 1 boinc boinc      620 Feb  7 23:58 HkFMDm5PBs4n7Olcko1bjSoqABFKDmABFKDmyeZQDm2aKKDmyilHMo.diag
[2024-02-07 23:58:21] -rw-r--r-- 1 boinc boinc    23479 Feb  7 23:58 stderr.txt
[2024-02-07 23:58:21] HITS file was successfully produced:
[2024-02-07 23:58:21] -rw------- 1 boinc boinc 1577683 Feb  7 23:52 shared/HITS.pool.root.1
[2024-02-07 23:58:21]  *** Contents of shared directory: ***
[2024-02-07 23:58:21] total 39932
[2024-02-07 23:58:21] -rw-r--r-- 2 boinc boinc 36949600 Feb  7 23:42 ATLAS.root_0
[2024-02-07 23:58:21] -rw-r--r-- 2 boinc boinc    17638 Feb  7 23:42 start_atlas.sh
[2024-02-07 23:58:21] -rw-r--r-- 2 boinc boinc   453819 Feb  7 23:42 input.tar.gz
[2024-02-07 23:58:21] -rw------- 1 boinc boinc  1577683 Feb  7 23:52 HITS.pool.root.1
[2024-02-07 23:58:21] -rw------- 1 boinc boinc  1884160 Feb  7 23:58 result.tar.gz
23:58:23 (294721): run_atlas exited; CPU time 178.444688
23:58:23 (294721): called boinc_finish(0)

</stderr_txt>
]]>

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