Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
06:02:19 (540351): wrapper (7.7.26015): starting
06:02:19 (540351): wrapper: running run_atlas (--nthreads 5)
[2024-02-08 06:02:19] Arguments: --nthreads 5
[2024-02-08 06:02:19] Threads: 5
[2024-02-08 06:02:19] Checking for CVMFS
[2024-02-08 06:02:19] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-08 06:02:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-08 06:02:19] Running cvmfs_config stat atlas.cern.ch
[2024-02-08 06:02:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-08 06:02:20] 2.11.2.0 537501 0 28784 129149 3 12 2837071 4096000 30 130560 0 6053 99.858 34939 8986 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-08 06:02:20] CVMFS is ok
[2024-02-08 06:02:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-08 06:02:20] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-08 06:02:20] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-08 06:02:20] Further information can be found at the LHC@home message board.
[2024-02-08 06:02:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-08 06:02:20] Checking for apptainer binary...
[2024-02-08 06:02:20] apptainer is not installed, using version from CVMFS
[2024-02-08 06:02:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-08 06:02:20] x32-kubuntu
[2024-02-08 06:02:20] apptainer works
[2024-02-08 06:02:20] Set ATHENA_PROC_NUMBER=5
[2024-02-08 06:02:20] Set ATHENA_CORE_NUMBER=5
[2024-02-08 06:02:20] Starting ATLAS job with PandaID=6102304178
[2024-02-08 06:02:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-08 06:17:44]  *** The last 200 lines of the pilot log: ***
[2024-02-08 06:17:44] 2024-02-08 11:16:44,773 | INFO     | monitor loop #161: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:16:44,773 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:16:47,276 | INFO     | monitor loop #162: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:16:47,276 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:16:49,779 | INFO     | monitor loop #163: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:16:49,780 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:16:52,281 | INFO     | monitor loop #164: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:16:52,281 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:16:54,784 | INFO     | monitor loop #165: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:16:54,784 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:16:57,287 | INFO     | monitor loop #166: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:16:57,287 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:16:59,791 | INFO     | monitor loop #167: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:16:59,791 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:02,135 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-08 06:17:44] 2024-02-08 11:17:02,293 | INFO     | monitor loop #168: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:17:02,293 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:02,545 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-08 06:17:44] 2024-02-08 11:17:02,545 | INFO     | will try again after 18s..
[2024-02-08 06:17:44] 2024-02-08 11:17:04,796 | INFO     | monitor loop #169: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:17:04,796 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:07,299 | INFO     | monitor loop #170: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:17:07,299 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:09,803 | INFO     | monitor loop #171: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:17:09,803 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:12,306 | INFO     | monitor loop #172: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:17:12,306 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:14,809 | INFO     | monitor loop #173: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:17:14,809 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:17,312 | INFO     | monitor loop #174: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:17:17,312 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:19,815 | INFO     | monitor loop #175: job 0:6102304178 is in state 'stageout'
[2024-02-08 06:17:44] 2024-02-08 11:17:19,815 | WARNING  | aborting job monitor tasks since payload process 554247 is not running
[2024-02-08 06:17:44] 2024-02-08 11:17:20,636 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-08 06:17:44] 2024-02-08 11:17:20,839 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-08 06:17:44] 2024-02-08 11:17:20,839 | WARNING  | cache file=/var/lib/boinc-client/slots/3/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/3/agis
[2024-02-08 06:17:44] 2024-02-08 11:17:20,855 | INFO     | transferring file a2b55f64-1ca3-48f1-a640-9f1ea7fc8a72_22944.1.job.log.tgz from /var/lib/boinc-client/slots/3/PanDA_Pilot-6102304178/a2b55f64-1ca3-48f1-a640-9f1ea7
[2024-02-08 06:17:44] 2024-02-08 11:17:20,855 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6102304178/a2b55f64-1ca3-48f1-a640-9f1ea7fc8a72_22944.1.job.log.tgz /var/lib/boinc-cli
[2024-02-08 06:17:44] 2024-02-08 11:17:20,866 | INFO     | Adding to output.list: a2b55f64-1ca3-48f1-a640-9f1ea7fc8a72_22944.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/ef/c8/a2b55f64-1ca3-
[2024-02-08 06:17:44] 2024-02-08 11:17:20,866 | INFO     | summary of transferred files:
[2024-02-08 06:17:44] 2024-02-08 11:17:20,866 | INFO     |  -- lfn=a2b55f64-1ca3-48f1-a640-9f1ea7fc8a72_22944.1.job.log.tgz, status_code=0, status=transferred
[2024-02-08 06:17:44] 2024-02-08 11:17:20,866 | INFO     | stage-out finished correctly
[2024-02-08 06:17:44] 2024-02-08 11:17:22,154 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-08 06:17:44] 2024-02-08 11:17:22,194 | INFO     | job 6102304178 has state=finished
[2024-02-08 06:17:44] 2024-02-08 11:17:22,194 | INFO     | preparing for final server update for job 6102304178 in state='finished'
[2024-02-08 06:17:44] 2024-02-08 11:17:22,194 | INFO     | executing command: curl --connect-timeout 20 --max-time 120 -H "Content-Type: application/json" -X POST --upload-file /var/lib/boinc-client/slots/3/PanDA_Pilot-610
[2024-02-08 06:17:44] 2024-02-08 11:17:22,323 | INFO     | monitor loop #176: job 0:6102304178 is in state 'finished'
[2024-02-08 06:17:44] 2024-02-08 11:17:22,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-08 06:17:44] 2024-02-08 11:17:23,699 | INFO     | this job has now completed (state=finished)
[2024-02-08 06:17:44] 2024-02-08 11:17:23,700 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-08 06:17:44] 2024-02-08 11:17:23,700 | INFO     | job 6102304178 has finished - writing final server update
[2024-02-08 06:17:44] 2024-02-08 11:17:23,700 | INFO     | total number of processed events: 2 (read)
[2024-02-08 06:17:44] 2024-02-08 11:17:23,702 | INFO     | executing command: lscpu
[2024-02-08 06:17:44] 2024-02-08 11:17:23,719 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-08 06:17:44] 2024-02-08 11:17:23,719 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-08 06:17:44] 2024-02-08 11:17:23,734 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-08 06:17:44] 2024-02-08 11:17:24,825 | INFO     | monitor loop #177: job 0:6102304178 is in state 'finished'
[2024-02-08 06:17:44] 2024-02-08 11:17:24,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-08 06:17:44] 2024-02-08 11:17:25,268 | INFO     | CPU arch script returned: x86-64-v3
[2024-02-08 06:17:44] 2024-02-08 11:17:25,268 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6102304178/memory_monitor_summary.json (trf name=prmon)
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | extracted standard info from prmon json
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | extracted standard memory fields from prmon json
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | WARNING  | wrong length of table data, x=[1707390316.0, 1707390377.0, 1707390438.0, 1707390499.0, 1707390560.0, 1707390621.0], y=[1023.0, 860585.0, 941401.0, 1005257.0, 11217
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | ..............................
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | . Timing measurements:
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | . get job = 60 s
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | . initial setup = 41 s
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | . payload setup = 2 s
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | . stage-in = 59 s
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | . payload execution = 357 s
[2024-02-08 06:17:44] 2024-02-08 11:17:25,269 | INFO     | . stage-out = 364 s
[2024-02-08 06:17:44] 2024-02-08 11:17:25,270 | INFO     | . log creation = 0 s
[2024-02-08 06:17:44] 2024-02-08 11:17:25,270 | INFO     | ..............................
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | 
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | job summary report
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | --------------------------------------------------
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | PanDA job id: 6102304178
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | task id: NULL
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | errors: (none)
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | pilot state: finished 
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | transexitcode: 0
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | exeerrorcode: 0
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | exeerrordiag: 
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | exitcode: 0
[2024-02-08 06:17:44] 2024-02-08 11:17:25,299 | INFO     | exitmsg: OK
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | cpuconsumptiontime: 90 s
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | nevents: 2
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | neventsw: 0
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | pid: 554247
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | pgrp: 554247
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | corecount: 5
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | event service: False
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | sizes: {0: 2407022, 11: 2407168, 22: 2407196, 32: 2407224, 43: 2407252, 53: 2407280, 61: 2407496, 64: 2407524, 363: 2428991, 729: 2438055, 730: 2438111, 733: 24386
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | --------------------------------------------------
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | 
[2024-02-08 06:17:44] 2024-02-08 11:17:25,300 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-08 06:17:44] 2024-02-08 11:17:25,310 | INFO     | job 6102304178 has completed (purged errors)
[2024-02-08 06:17:44] 2024-02-08 11:17:25,311 | INFO     | overall cleanup function is called
[2024-02-08 06:17:44] 2024-02-08 11:17:26,317 | INFO     | --- collectZombieJob: --- 10, [554247]
[2024-02-08 06:17:44] 2024-02-08 11:17:26,317 | INFO     | zombie collector waiting for pid 554247
[2024-02-08 06:17:44] 2024-02-08 11:17:26,317 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-08 06:17:44] 2024-02-08 11:17:27,322 | INFO     | collected zombie processes
[2024-02-08 06:17:44] 2024-02-08 11:17:27,322 | INFO     | will now attempt to kill all subprocesses of pid=554247
[2024-02-08 06:17:44] 2024-02-08 11:17:27,362 | INFO     | process IDs to be killed: [554247] (in reverse order)
[2024-02-08 06:17:44] 2024-02-08 11:17:27,388 | WARNING  | found no corresponding commands to process id(s)
[2024-02-08 06:17:44] 2024-02-08 11:17:27,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-08 06:17:44] 2024-02-08 11:17:27,390 | INFO     | did not find any defunct processes belonging to 554247
[2024-02-08 06:17:44] 2024-02-08 11:17:27,393 | INFO     | did not find any defunct processes belonging to 554247
[2024-02-08 06:17:44] 2024-02-08 11:17:27,393 | INFO     | ready for new job
[2024-02-08 06:17:44] 2024-02-08 11:17:27,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-08 06:17:44] 2024-02-08 11:17:27,394 | INFO     | **************************************
[2024-02-08 06:17:44] 2024-02-08 11:17:27,394 | INFO     | ***  PanDA Pilot version 3.7.0.36  ***
[2024-02-08 06:17:44] 2024-02-08 11:17:27,394 | INFO     | **************************************
[2024-02-08 06:17:44] 2024-02-08 11:17:27,394 | INFO     | 
[2024-02-08 06:17:44] 2024-02-08 11:17:27,395 | INFO     | architecture information:
[2024-02-08 06:17:44] 2024-02-08 11:17:27,395 | INFO     | executing command: cat /etc/os-release
[2024-02-08 06:17:44] 2024-02-08 11:17:27,402 | INFO     | cat /etc/os-release:
[2024-02-08 06:17:44] NAME="CentOS Linux"
[2024-02-08 06:17:44] VERSION="7 (Core)"
[2024-02-08 06:17:44] ID="centos"
[2024-02-08 06:17:44] ID_LIKE="rhel fedora"
[2024-02-08 06:17:44] VERSION_ID="7"
[2024-02-08 06:17:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-08 06:17:44] ANSI_COLOR="0;31"
[2024-02-08 06:17:44] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-08 06:17:44] HOME_URL="https://www.centos.org/"
[2024-02-08 06:17:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-08 06:17:44] 
[2024-02-08 06:17:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-08 06:17:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-08 06:17:44] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-08 06:17:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-08 06:17:44] 
[2024-02-08 06:17:44] 2024-02-08 11:17:27,402 | INFO     | **************************************
[2024-02-08 06:17:44] 2024-02-08 11:17:27,905 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2024-02-08 06:17:44] 2024-02-08 11:17:27,914 | INFO     | sufficient remaining disk space (431475392512 B)
[2024-02-08 06:17:44] 2024-02-08 11:17:27,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-08 06:17:44] 2024-02-08 11:17:27,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-08 06:17:44] 2024-02-08 11:17:28,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-08 06:17:44] 2024-02-08 11:17:28,205 | INFO     | found 0 job(s) in 20 queues
[2024-02-08 06:17:44] 2024-02-08 11:17:28,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-08 06:17:44] 2024-02-08 11:17:28,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-08 06:17:44] 2024-02-08 11:17:28,333 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-08 06:17:44] 2024-02-08 11:17:28,333 | INFO     | aborting loop
[2024-02-08 06:17:44] 2024-02-08 11:17:28,906 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-08 06:17:44] 2024-02-08 11:17:28,920 | INFO     | [job] retrieve thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:28,944 | INFO     | [data] copytool_in thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:29,010 | INFO     | [job] validate thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:29,141 | INFO     | [job] create_data_payload thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:29,157 | INFO     | [payload] failed_post thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:29,338 | INFO     | [job] job monitor thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:29,391 | INFO     | [payload] control thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:29,614 | INFO     | [payload] validate_pre thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:29,717 | INFO     | [payload] validate_post thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:29,866 | INFO     | [data] control thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:30,041 | INFO     | [payload] execute_payloads thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:30,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-08 06:17:44] 2024-02-08 11:17:30,520 | INFO     | [job] control thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:30,912 | INFO     | [data] copytool_out thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:31,315 | INFO     | [job] queue monitor thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:32,205 | INFO     | [data] queue_monitor thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:38,010 | INFO     | job.realtimelogging is not enabled
[2024-02-08 06:17:44] 2024-02-08 11:17:39,016 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-08 06:17:44] 2024-02-08 11:17:39,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140276167874368)>', '<ExcThread(monitor, started 140275796121344)>']
[2024-02-08 06:17:44] 2024-02-08 11:17:39,258 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-08 06:17:44] 2024-02-08 11:17:39,258 | INFO     | [monitor] control thread has ended
[2024-02-08 06:17:44] 2024-02-08 11:17:44,060 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-08 06:17:44] 2024-02-08 11:17:44,060 | INFO     | traces error code: 0
[2024-02-08 06:17:44] 2024-02-08 11:17:44,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-08 06:17:44] 2024-02-08 11:17:44,107 [wrapper] ==== pilot stdout END ====
[2024-02-08 06:17:44] 2024-02-08 11:17:44,108 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-08 06:17:44] 2024-02-08 11:17:44,110 [wrapper] pilotpid: 545354
[2024-02-08 06:17:44] 2024-02-08 11:17:44,111 [wrapper] Pilot exit status: 0
[2024-02-08 06:17:44] 2024-02-08 11:17:44,116 [wrapper] pandaids: 6102304178
[2024-02-08 06:17:44] 2024-02-08 11:17:44,133 [wrapper] cleanup: SIGTERM to supervisor_pilot  584766 545355
[2024-02-08 06:17:44] 2024-02-08 11:17:44,134 [wrapper] Test setup, not cleaning
[2024-02-08 06:17:44] 2024-02-08 11:17:44,136 [wrapper] ==== wrapper stdout END ====
[2024-02-08 06:17:44] 2024-02-08 11:17:44,137 [wrapper] ==== wrapper stderr END ====
[2024-02-08 06:17:44] 2024-02-08 11:17:44,139 [wrapper] apfmon messages muted
[2024-02-08 06:17:44]  *** Error codes and diagnostics ***
[2024-02-08 06:17:44]     "exeErrorCode": 0,
[2024-02-08 06:17:44]     "exeErrorDiag": "",
[2024-02-08 06:17:44]     "pilotErrorCode": 0,
[2024-02-08 06:17:44]     "pilotErrorDiag": "",
[2024-02-08 06:17:44]  *** Listing of results directory ***
[2024-02-08 06:17:44] total 45412
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc   441289 Feb  8 05:27 pilot3.tar.gz
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc     4388 Feb  8 05:43 queuedata.json
[2024-02-08 06:17:44] -rwx------ 1 boinc boinc    31345 Feb  8 05:44 runpilot2-wrapper.sh
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc      107 Feb  8 06:02 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-08 06:17:44] -rwxr-xr-x 1 boinc boinc     7986 Feb  8 06:02 run_atlas
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc      112 Feb  8 06:02 job.xml
[2024-02-08 06:17:44] -rw-r--r-- 2 boinc boinc    17618 Feb  8 06:02 start_atlas.sh
[2024-02-08 06:17:44] drwxrwx--x 2 boinc boinc     4096 Feb  8 06:02 shared
[2024-02-08 06:17:44] -rw-r--r-- 2 boinc boinc   453773 Feb  8 06:02 input.tar.gz
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc     9517 Feb  8 06:02 init_data.xml
[2024-02-08 06:17:44] -rw-r--r-- 2 boinc boinc 39611081 Feb  8 06:02 EVNT.04972714._000022.pool.root.1
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc        0 Feb  8 06:02 boinc_lockfile
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc     2680 Feb  8 06:02 pandaJob.out
[2024-02-08 06:17:44] -rw------- 1 boinc boinc      424 Feb  8 06:02 setup.sh.local
[2024-02-08 06:17:44] -rw------- 1 boinc boinc   960233 Feb  8 06:02 agis_schedconf.cvmfs.json
[2024-02-08 06:17:44] -rw------- 1 boinc boinc  1342081 Feb  8 06:03 cric_ddmendpoints.json
[2024-02-08 06:17:44] drwx------ 4 boinc boinc     4096 Feb  8 06:04 pilot3
[2024-02-08 06:17:44] -rw------- 1 boinc boinc  1433876 Feb  8 06:11 output.1.a2b55f64-1ca3-48f1-a640-9f1ea7fc8a72_22944.pool.root
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc      531 Feb  8 06:11 boinc_task_state.xml
[2024-02-08 06:17:44] -rw------- 1 boinc boinc      997 Feb  8 06:11 memory_monitor_summary.json
[2024-02-08 06:17:44] -rw------- 1 boinc boinc   166670 Feb  8 06:14 a2b55f64-1ca3-48f1-a640-9f1ea7fc8a72_22944.1.job.log.tgz
[2024-02-08 06:17:44] -rw------- 1 boinc boinc     7029 Feb  8 06:17 heartbeat.json
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc     8192 Feb  8 06:17 boinc_mmap_file
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc       23 Feb  8 06:17 wrapper_checkpoint.txt
[2024-02-08 06:17:44] -rw------- 1 boinc boinc     3981 Feb  8 06:17 pilotlog.txt
[2024-02-08 06:17:44] -rw------- 1 boinc boinc   135010 Feb  8 06:17 a2b55f64-1ca3-48f1-a640-9f1ea7fc8a72_22944.1.job.log
[2024-02-08 06:17:44] -rw------- 1 boinc boinc      464 Feb  8 06:17 output.list
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc      748 Feb  8 06:17 runtime_log
[2024-02-08 06:17:44] -rw------- 1 boinc boinc  1751040 Feb  8 06:17 result.tar.gz
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc    12102 Feb  8 06:17 runtime_log.err
[2024-02-08 06:17:44] -rw------- 1 boinc boinc      622 Feb  8 06:17 ENfMDmB4Gs4n7Olcko1bjSoqABFKDmABFKDmyeZQDmqbKKDmD3VW0m.diag
[2024-02-08 06:17:44] -rw-r--r-- 1 boinc boinc    23552 Feb  8 06:17 stderr.txt
[2024-02-08 06:17:44] HITS file was successfully produced:
[2024-02-08 06:17:44] -rw------- 1 boinc boinc 1433876 Feb  8 06:11 shared/HITS.pool.root.1
[2024-02-08 06:17:44]  *** Contents of shared directory: ***
[2024-02-08 06:17:44] total 42264
[2024-02-08 06:17:44] -rw-r--r-- 2 boinc boinc    17618 Feb  8 06:02 start_atlas.sh
[2024-02-08 06:17:44] -rw-r--r-- 2 boinc boinc   453773 Feb  8 06:02 input.tar.gz
[2024-02-08 06:17:44] -rw-r--r-- 2 boinc boinc 39611081 Feb  8 06:02 ATLAS.root_0
[2024-02-08 06:17:44] -rw------- 1 boinc boinc  1433876 Feb  8 06:11 HITS.pool.root.1
[2024-02-08 06:17:44] -rw------- 1 boinc boinc  1751040 Feb  8 06:17 result.tar.gz
06:17:45 (540351): run_atlas exited; CPU time 88.865461
06:17:45 (540351): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN