Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
06:00:41 (3346083): wrapper (7.7.26015): starting
06:00:41 (3346083): wrapper: running run_atlas (--nthreads 1)
[2024-02-08 06:00:41] Arguments: --nthreads 1
[2024-02-08 06:00:41] Threads: 1
[2024-02-08 06:00:41] Checking for CVMFS
[2024-02-08 06:00:41] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-08 06:00:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-08 06:00:41] Running cvmfs_config stat atlas.cern.ch
[2024-02-08 06:00:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-08 06:00:42] 2.9.2.0 3174125 63 49892 129149 0 86 3876905 4194304 1257 130560 0 525595 99.507 310728 2414 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-08 06:00:42] CVMFS is ok
[2024-02-08 06:00:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-08 06:00:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-02-08 06:00:42] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-08 06:00:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-08 06:00:42] Further information can be found at the LHC@home message board.
[2024-02-08 06:00:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-08 06:00:42] Checking for apptainer binary...
[2024-02-08 06:00:42] apptainer is not installed, using version from CVMFS
[2024-02-08 06:00:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-08 06:00:42] WC5950
[2024-02-08 06:00:42] apptainer works
[2024-02-08 06:00:42] Starting ATLAS job with PandaID=6102172819
[2024-02-08 06:00:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-08 06:29:19]  *** The last 200 lines of the pilot log: ***
[2024-02-08 06:29:19] 2024-02-08 11:28:19,032 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:21,535 | INFO     | monitor loop #228: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:21,535 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:24,036 | INFO     | monitor loop #229: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:24,036 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:26,539 | INFO     | monitor loop #230: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:26,539 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:29,046 | INFO     | monitor loop #231: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:29,047 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:31,554 | INFO     | monitor loop #232: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:31,554 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:31,636 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-08 06:29:19] 2024-02-08 11:28:32,249 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-08 06:29:19] 2024-02-08 11:28:32,249 | INFO     | will try again after 23s..
[2024-02-08 06:29:19] 2024-02-08 11:28:34,086 | INFO     | monitor loop #233: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:34,087 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:35,736 | INFO     | 1660s have passed since pilot start
[2024-02-08 06:29:19] 2024-02-08 11:28:36,588 | INFO     | monitor loop #234: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:36,603 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:39,104 | INFO     | monitor loop #235: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:39,104 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:41,610 | INFO     | monitor loop #236: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:41,610 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:44,112 | INFO     | monitor loop #237: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:44,112 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:46,618 | INFO     | monitor loop #238: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:46,619 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:49,120 | INFO     | monitor loop #239: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:49,120 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:51,632 | INFO     | monitor loop #240: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:51,632 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:54,140 | INFO     | monitor loop #241: job 0:6102172819 is in state 'stageout'
[2024-02-08 06:29:19] 2024-02-08 11:28:54,140 | WARNING  | aborting job monitor tasks since payload process 3357195 is not running
[2024-02-08 06:29:19] 2024-02-08 11:28:55,352 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-08 06:29:19] 2024-02-08 11:28:55,700 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-08 06:29:19] 2024-02-08 11:28:55,700 | WARNING  | cache file=/var/lib/boinc-client/slots/3/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/3/agis
[2024-02-08 06:29:19] 2024-02-08 11:28:55,740 | INFO     | transferring file e0693edc-b595-44b9-b6dc-063526c91883_36699.1.job.log.tgz from /var/lib/boinc-client/slots/3/PanDA_Pilot-6102172819/e0693edc-b595-44b9-b6dc-063526
[2024-02-08 06:29:19] 2024-02-08 11:28:55,740 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6102172819/e0693edc-b595-44b9-b6dc-063526c91883_36699.1.job.log.tgz /var/lib/boinc-cli
[2024-02-08 06:29:19] 2024-02-08 11:28:55,756 | INFO     | Adding to output.list: e0693edc-b595-44b9-b6dc-063526c91883_36699.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/67/b0/e0693edc-b595-
[2024-02-08 06:29:19] 2024-02-08 11:28:55,757 | INFO     | summary of transferred files:
[2024-02-08 06:29:19] 2024-02-08 11:28:55,757 | INFO     |  -- lfn=e0693edc-b595-44b9-b6dc-063526c91883_36699.1.job.log.tgz, status_code=0, status=transferred
[2024-02-08 06:29:19] 2024-02-08 11:28:55,757 | INFO     | stage-out finished correctly
[2024-02-08 06:29:19] 2024-02-08 11:28:56,052 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-08 06:29:19] 2024-02-08 11:28:56,116 | INFO     | job 6102172819 has state=finished
[2024-02-08 06:29:19] 2024-02-08 11:28:56,116 | INFO     | preparing for final server update for job 6102172819 in state='finished'
[2024-02-08 06:29:19] 2024-02-08 11:28:56,116 | INFO     | this job has now completed (state=finished)
[2024-02-08 06:29:19] 2024-02-08 11:28:56,116 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-08 06:29:19] 2024-02-08 11:28:56,117 | INFO     | job 6102172819 has finished - writing final server update
[2024-02-08 06:29:19] 2024-02-08 11:28:56,117 | INFO     | total number of processed events: 2 (read)
[2024-02-08 06:29:19] 2024-02-08 11:28:56,141 | INFO     | executing command: lscpu
[2024-02-08 06:29:19] 2024-02-08 11:28:56,162 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-08 06:29:19] 2024-02-08 11:28:56,162 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-08 06:29:19] 2024-02-08 11:28:56,195 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-08 06:29:19] 2024-02-08 11:28:56,643 | INFO     | monitor loop #242: job 0:6102172819 is in state 'finished'
[2024-02-08 06:29:19] 2024-02-08 11:28:56,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-08 06:29:19] 2024-02-08 11:28:59,144 | INFO     | monitor loop #243: job 0:6102172819 is in state 'finished'
[2024-02-08 06:29:19] 2024-02-08 11:28:59,144 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-08 06:29:19] 2024-02-08 11:28:59,936 | INFO     | CPU arch script returned: x86-64-v3
[2024-02-08 06:29:19] 2024-02-08 11:28:59,936 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6102172819/memory_monitor_summary.json (trf name=prmon)
[2024-02-08 06:29:19] 2024-02-08 11:28:59,937 | INFO     | extracted standard info from prmon json
[2024-02-08 06:29:19] 2024-02-08 11:28:59,937 | INFO     | extracted standard memory fields from prmon json
[2024-02-08 06:29:19] 2024-02-08 11:28:59,937 | INFO     | fitting pss+swap vs Time
[2024-02-08 06:29:19] 2024-02-08 11:28:59,937 | INFO     | current memory leak: 1043.01 B/s (using 12 data points, chi2=0.28)
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | ..............................
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | . Timing measurements:
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | . get job = 36 s
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | . initial setup = 65 s
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | . payload setup = 7 s
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | . stage-in = 59 s
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | . payload execution = 1133 s
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | . stage-out = 366 s
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | . log creation = 0 s
[2024-02-08 06:29:19] 2024-02-08 11:28:59,938 | INFO     | ..............................
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | 
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | job summary report
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | --------------------------------------------------
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | PanDA job id: 6102172819
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | task id: NULL
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | errors: (none)
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | pilot state: finished 
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | transexitcode: 0
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | exeerrorcode: 0
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | exeerrordiag: 
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | exitcode: 0
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | exitmsg: OK
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | cpuconsumptiontime: 325 s
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | nevents: 2
[2024-02-08 06:29:19] 2024-02-08 11:28:59,996 | INFO     | neventsw: 0
[2024-02-08 06:29:19] 2024-02-08 11:28:59,997 | INFO     | pid: 3357195
[2024-02-08 06:29:19] 2024-02-08 11:28:59,997 | INFO     | pgrp: 3357195
[2024-02-08 06:29:19] 2024-02-08 11:28:59,997 | INFO     | corecount: 1
[2024-02-08 06:29:19] 2024-02-08 11:28:59,997 | INFO     | event service: False
[2024-02-08 06:29:19] 2024-02-08 11:28:59,997 | INFO     | sizes: {0: 2407172, 11: 2407318, 21: 2407346, 32: 2407374, 43: 2407402, 53: 2407430, 63: 2407646, 64: 2407674, 1144: 2429541, 1510: 2438605, 1511: 2438661, 1514: 2
[2024-02-08 06:29:19] 2024-02-08 11:28:59,997 | INFO     | --------------------------------------------------
[2024-02-08 06:29:19] 2024-02-08 11:28:59,997 | INFO     | 
[2024-02-08 06:29:19] 2024-02-08 11:28:59,997 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | job 6102172819 has completed (purged errors)
[2024-02-08 06:29:19] 2024-02-08 11:29:00,016 | INFO     | overall cleanup function is called
[2024-02-08 06:29:19] 2024-02-08 11:29:01,024 | INFO     | --- collectZombieJob: --- 10, [3357195]
[2024-02-08 06:29:19] 2024-02-08 11:29:01,024 | INFO     | zombie collector waiting for pid 3357195
[2024-02-08 06:29:19] 2024-02-08 11:29:01,024 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-08 06:29:19] 2024-02-08 11:29:02,032 | INFO     | collected zombie processes
[2024-02-08 06:29:19] 2024-02-08 11:29:02,032 | INFO     | will now attempt to kill all subprocesses of pid=3357195
[2024-02-08 06:29:19] 2024-02-08 11:29:02,107 | INFO     | process IDs to be killed: [3357195] (in reverse order)
[2024-02-08 06:29:19] 2024-02-08 11:29:02,152 | WARNING  | found no corresponding commands to process id(s)
[2024-02-08 06:29:19] 2024-02-08 11:29:02,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-08 06:29:19] 2024-02-08 11:29:02,155 | INFO     | did not find any defunct processes belonging to 3357195
[2024-02-08 06:29:19] 2024-02-08 11:29:02,157 | INFO     | did not find any defunct processes belonging to 3357195
[2024-02-08 06:29:19] 2024-02-08 11:29:02,157 | INFO     | ready for new job
[2024-02-08 06:29:19] 2024-02-08 11:29:02,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-08 06:29:19] 2024-02-08 11:29:02,158 | INFO     | **************************************
[2024-02-08 06:29:19] 2024-02-08 11:29:02,158 | INFO     | ***  PanDA Pilot version 3.7.0.36  ***
[2024-02-08 06:29:19] 2024-02-08 11:29:02,158 | INFO     | **************************************
[2024-02-08 06:29:19] 2024-02-08 11:29:02,158 | INFO     | 
[2024-02-08 06:29:19] 2024-02-08 11:29:02,181 | INFO     | architecture information:
[2024-02-08 06:29:19] 2024-02-08 11:29:02,181 | INFO     | executing command: cat /etc/os-release
[2024-02-08 06:29:19] 2024-02-08 11:29:02,199 | INFO     | cat /etc/os-release:
[2024-02-08 06:29:19] NAME="CentOS Linux"
[2024-02-08 06:29:19] VERSION="7 (Core)"
[2024-02-08 06:29:19] ID="centos"
[2024-02-08 06:29:19] ID_LIKE="rhel fedora"
[2024-02-08 06:29:19] VERSION_ID="7"
[2024-02-08 06:29:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-08 06:29:19] ANSI_COLOR="0;31"
[2024-02-08 06:29:19] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-08 06:29:19] HOME_URL="https://www.centos.org/"
[2024-02-08 06:29:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-08 06:29:19] 
[2024-02-08 06:29:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-08 06:29:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-08 06:29:19] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-08 06:29:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-08 06:29:19] 
[2024-02-08 06:29:19] 2024-02-08 11:29:02,199 | INFO     | **************************************
[2024-02-08 06:29:19] 2024-02-08 11:29:02,700 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2024-02-08 06:29:19] 2024-02-08 11:29:02,722 | INFO     | sufficient remaining disk space (367516450816 B)
[2024-02-08 06:29:19] 2024-02-08 11:29:02,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-08 06:29:19] 2024-02-08 11:29:02,723 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-08 06:29:19] 2024-02-08 11:29:02,723 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-08 06:29:19] 2024-02-08 11:29:02,723 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-08 06:29:19] 2024-02-08 11:29:02,723 | INFO     | aborting loop
[2024-02-08 06:29:19] 2024-02-08 11:29:02,812 | INFO     | found 0 job(s) in 20 queues
[2024-02-08 06:29:19] 2024-02-08 11:29:02,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-08 06:29:19] 2024-02-08 11:29:02,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-08 06:29:19] 2024-02-08 11:29:03,724 | INFO     | [job] retrieve thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:03,728 | INFO     | [job] job monitor thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:03,804 | INFO     | [data] control thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:03,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-08 06:29:19] 2024-02-08 11:29:04,048 | INFO     | [payload] validate_post thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:04,164 | INFO     | [job] control thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:04,212 | INFO     | [job] validate thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:04,432 | INFO     | [payload] execute_payloads thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:04,712 | INFO     | [job] create_data_payload thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:04,812 | INFO     | [payload] validate_pre thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:04,884 | INFO     | [payload] control thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:04,900 | INFO     | [data] copytool_in thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:05,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-08 06:29:19] 2024-02-08 11:29:05,032 | INFO     | [payload] failed_post thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:05,848 | INFO     | [data] copytool_out thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:06,008 | INFO     | [job] queue monitor thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:06,728 | INFO     | [data] queue_monitor thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:13,224 | INFO     | job.realtimelogging is not enabled
[2024-02-08 06:29:19] 2024-02-08 11:29:14,228 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-08 06:29:19] 2024-02-08 11:29:14,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140175052969792)>', '<ExcThread(monitor, started 140174621132544)>']
[2024-02-08 06:29:19] 2024-02-08 11:29:14,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-08 06:29:19] 2024-02-08 11:29:14,872 | INFO     | [monitor] control thread has ended
[2024-02-08 06:29:19] 2024-02-08 11:29:19,368 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-08 06:29:19] 2024-02-08 11:29:19,368 | INFO     | traces error code: 0
[2024-02-08 06:29:19] 2024-02-08 11:29:19,368 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-08 06:29:19] 2024-02-08 11:29:19,408 [wrapper] ==== pilot stdout END ====
[2024-02-08 06:29:19] 2024-02-08 11:29:19,413 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-08 06:29:19] 2024-02-08 11:29:19,415 [wrapper] pilotpid: 3349818
[2024-02-08 06:29:19] 2024-02-08 11:29:19,421 [wrapper] Pilot exit status: 0
[2024-02-08 06:29:19] 2024-02-08 11:29:19,473 [wrapper] pandaids: 6102172819
[2024-02-08 06:29:19] 2024-02-08 11:29:19,529 [wrapper] cleanup: SIGTERM to supervisor_pilot 3395291 3349819
[2024-02-08 06:29:19] 2024-02-08 11:29:19,531 [wrapper] Test setup, not cleaning
[2024-02-08 06:29:19] 2024-02-08 11:29:19,538 [wrapper] ==== wrapper stdout END ====
[2024-02-08 06:29:19] 2024-02-08 11:29:19,546 [wrapper] ==== wrapper stderr END ====
[2024-02-08 06:29:19] 2024-02-08 11:29:19,573 [wrapper] apfmon messages muted
[2024-02-08 06:29:19]  *** Error codes and diagnostics ***
[2024-02-08 06:29:19]     "exeErrorCode": 0,
[2024-02-08 06:29:19]     "exeErrorDiag": "",
[2024-02-08 06:29:19]     "pilotErrorCode": 0,
[2024-02-08 06:29:19]     "pilotErrorDiag": "",
[2024-02-08 06:29:19]  *** Listing of results directory ***
[2024-02-08 06:29:19] total 43660
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc   441289 Feb  8 02:39 pilot3.tar.gz
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc     4388 Feb  8 02:54 queuedata.json
[2024-02-08 06:29:19] -rwx------ 1 boinc boinc    31345 Feb  8 02:57 runpilot2-wrapper.sh
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc      107 Feb  8 06:00 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-08 06:29:19] -rwxr-xr-x 1 boinc boinc     7986 Feb  8 06:00 run_atlas
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc      112 Feb  8 06:00 job.xml
[2024-02-08 06:29:19] -rw-r--r-- 2 boinc boinc    17618 Feb  8 06:00 start_atlas.sh
[2024-02-08 06:29:19] drwxrwx--x 2 boinc boinc     4096 Feb  8 06:00 shared
[2024-02-08 06:29:19] -rw-r--r-- 2 boinc boinc   453830 Feb  8 06:00 input.tar.gz
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc     9512 Feb  8 06:00 init_data.xml
[2024-02-08 06:29:19] -rw-r--r-- 2 boinc boinc 37738636 Feb  8 06:00 EVNT.04972714._000024.pool.root.1
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc        0 Feb  8 06:00 boinc_lockfile
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc     2758 Feb  8 06:00 pandaJob.out
[2024-02-08 06:29:19] -rw------- 1 boinc boinc      424 Feb  8 06:00 setup.sh.local
[2024-02-08 06:29:19] -rw------- 1 boinc boinc  1342081 Feb  8 06:01 cric_ddmendpoints.json
[2024-02-08 06:29:19] -rw------- 1 boinc boinc   960233 Feb  8 06:02 agis_schedconf.cvmfs.json
[2024-02-08 06:29:19] drwx------ 4 boinc boinc     4096 Feb  8 06:02 pilot3
[2024-02-08 06:29:19] -rw------- 1 boinc boinc  1410903 Feb  8 06:22 output.1.e0693edc-b595-44b9-b6dc-063526c91883_36699.pool.root
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc      534 Feb  8 06:22 boinc_task_state.xml
[2024-02-08 06:29:19] -rw------- 1 boinc boinc      999 Feb  8 06:22 memory_monitor_summary.json
[2024-02-08 06:29:19] -rw------- 1 boinc boinc   159481 Feb  8 06:25 e0693edc-b595-44b9-b6dc-063526c91883_36699.1.job.log.tgz
[2024-02-08 06:29:19] -rw------- 1 boinc boinc     8003 Feb  8 06:28 heartbeat.json
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc       25 Feb  8 06:29 wrapper_checkpoint.txt
[2024-02-08 06:29:19] -rw------- 1 boinc boinc     3981 Feb  8 06:29 pilotlog.txt
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc     8192 Feb  8 06:29 boinc_mmap_file
[2024-02-08 06:29:19] -rw------- 1 boinc boinc   203628 Feb  8 06:29 e0693edc-b595-44b9-b6dc-063526c91883_36699.1.job.log
[2024-02-08 06:29:19] -rw------- 1 boinc boinc      464 Feb  8 06:29 output.list
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc      748 Feb  8 06:29 runtime_log
[2024-02-08 06:29:19] -rw------- 1 boinc boinc  1792000 Feb  8 06:29 result.tar.gz
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc    11951 Feb  8 06:29 runtime_log.err
[2024-02-08 06:29:19] -rw------- 1 boinc boinc      625 Feb  8 06:29 lmEMDmnSEs4n7Olcko1bjSoqABFKDmABFKDmyeZQDmTbKKDm0Cjl3n.diag
[2024-02-08 06:29:19] -rw-r--r-- 1 boinc boinc    23293 Feb  8 06:29 stderr.txt
[2024-02-08 06:29:19] HITS file was successfully produced:
[2024-02-08 06:29:19] -rw------- 1 boinc boinc 1410903 Feb  8 06:22 shared/HITS.pool.root.1
[2024-02-08 06:29:19]  *** Contents of shared directory: ***
[2024-02-08 06:29:19] total 40452
[2024-02-08 06:29:19] -rw-r--r-- 2 boinc boinc    17618 Feb  8 06:00 start_atlas.sh
[2024-02-08 06:29:19] -rw-r--r-- 2 boinc boinc   453830 Feb  8 06:00 input.tar.gz
[2024-02-08 06:29:19] -rw-r--r-- 2 boinc boinc 37738636 Feb  8 06:00 ATLAS.root_0
[2024-02-08 06:29:19] -rw------- 1 boinc boinc  1410903 Feb  8 06:22 HITS.pool.root.1
[2024-02-08 06:29:19] -rw------- 1 boinc boinc  1792000 Feb  8 06:29 result.tar.gz
06:29:21 (3346083): run_atlas exited; CPU time 321.954038
06:29:21 (3346083): called boinc_finish(0)

</stderr_txt>
]]>

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