Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
06:02:08 (537292): wrapper (7.7.26015): starting
06:02:08 (537292): wrapper: running run_atlas (--nthreads 5)
[2024-02-08 06:02:08] Arguments: --nthreads 5
[2024-02-08 06:02:08] Threads: 5
[2024-02-08 06:02:08] Checking for CVMFS
[2024-02-08 06:02:10] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-08 06:02:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-08 06:02:11] Running cvmfs_config stat atlas.cern.ch
[2024-02-08 06:02:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-08 06:02:11] 2.11.2.0 537501 0 25200 129149 3 1 2764135 4096000 0 130560 0 0 0.000 963 1362 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-08 06:02:11] CVMFS is ok
[2024-02-08 06:02:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-08 06:02:11] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-08 06:02:11] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-08 06:02:11] Further information can be found at the LHC@home message board.
[2024-02-08 06:02:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-08 06:02:11] Checking for apptainer binary...
[2024-02-08 06:02:11] apptainer is not installed, using version from CVMFS
[2024-02-08 06:02:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-08 06:02:11] x32-kubuntu
[2024-02-08 06:02:11] apptainer works
[2024-02-08 06:02:11] Set ATHENA_PROC_NUMBER=5
[2024-02-08 06:02:11] Set ATHENA_CORE_NUMBER=5
[2024-02-08 06:02:11] Starting ATLAS job with PandaID=6102285011
[2024-02-08 06:02:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-08 06:21:49]  *** The last 200 lines of the pilot log: ***
[2024-02-08 06:21:49] 2024-02-08 11:20:47,685 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:20:50,188 | INFO     | monitor loop #195: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:20:50,188 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:20:52,691 | INFO     | monitor loop #196: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:20:52,691 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:20:55,193 | INFO     | monitor loop #197: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:20:55,193 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:20:57,696 | INFO     | monitor loop #198: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:20:57,696 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:00,199 | INFO     | monitor loop #199: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:00,199 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:02,701 | INFO     | monitor loop #200: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:02,701 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:05,204 | INFO     | monitor loop #201: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:05,204 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:07,705 | INFO     | monitor loop #202: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:07,705 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:10,208 | INFO     | monitor loop #203: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:10,208 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:10,600 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-08 06:21:49] 2024-02-08 11:21:10,808 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-08 06:21:49] 2024-02-08 11:21:10,808 | INFO     | will try again after 17s..
[2024-02-08 06:21:49] 2024-02-08 11:21:12,711 | INFO     | monitor loop #204: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:12,711 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:15,214 | INFO     | monitor loop #205: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:15,214 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:17,717 | INFO     | monitor loop #206: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:17,717 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:20,218 | INFO     | monitor loop #207: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:20,218 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:22,721 | INFO     | monitor loop #208: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:22,721 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:25,224 | INFO     | monitor loop #209: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:25,224 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:27,727 | INFO     | monitor loop #210: job 0:6102285011 is in state 'stageout'
[2024-02-08 06:21:49] 2024-02-08 11:21:27,727 | WARNING  | aborting job monitor tasks since payload process 565933 is not running
[2024-02-08 06:21:49] 2024-02-08 11:21:27,893 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-08 06:21:49] 2024-02-08 11:21:28,098 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-08 06:21:49] 2024-02-08 11:21:28,098 | WARNING  | cache file=/var/lib/boinc-client/slots/2/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/2/agis
[2024-02-08 06:21:49] 2024-02-08 11:21:28,117 | INFO     | transferring file 5e494305-d36e-407e-972d-37a44d9f9284_38806.1.job.log.tgz from /var/lib/boinc-client/slots/2/PanDA_Pilot-6102285011/5e494305-d36e-407e-972d-37a44d
[2024-02-08 06:21:49] 2024-02-08 11:21:28,117 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6102285011/5e494305-d36e-407e-972d-37a44d9f9284_38806.1.job.log.tgz /var/lib/boinc-cli
[2024-02-08 06:21:49] 2024-02-08 11:21:28,129 | INFO     | Adding to output.list: 5e494305-d36e-407e-972d-37a44d9f9284_38806.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/9d/e8/5e494305-d36e-
[2024-02-08 06:21:49] 2024-02-08 11:21:28,129 | INFO     | summary of transferred files:
[2024-02-08 06:21:49] 2024-02-08 11:21:28,129 | INFO     |  -- lfn=5e494305-d36e-407e-972d-37a44d9f9284_38806.1.job.log.tgz, status_code=0, status=transferred
[2024-02-08 06:21:49] 2024-02-08 11:21:28,129 | INFO     | stage-out finished correctly
[2024-02-08 06:21:49] 2024-02-08 11:21:28,159 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-08 06:21:49] 2024-02-08 11:21:28,200 | INFO     | job 6102285011 has state=finished
[2024-02-08 06:21:49] 2024-02-08 11:21:28,200 | INFO     | preparing for final server update for job 6102285011 in state='finished'
[2024-02-08 06:21:49] 2024-02-08 11:21:28,200 | INFO     | this job has now completed (state=finished)
[2024-02-08 06:21:49] 2024-02-08 11:21:28,200 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-08 06:21:49] 2024-02-08 11:21:28,200 | INFO     | job 6102285011 has finished - writing final server update
[2024-02-08 06:21:49] 2024-02-08 11:21:28,201 | INFO     | total number of processed events: 2 (read)
[2024-02-08 06:21:49] 2024-02-08 11:21:28,202 | INFO     | executing command: lscpu
[2024-02-08 06:21:49] 2024-02-08 11:21:28,217 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-08 06:21:49] 2024-02-08 11:21:28,217 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-08 06:21:49] 2024-02-08 11:21:28,231 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-08 06:21:49] 2024-02-08 11:21:29,749 | INFO     | CPU arch script returned: x86-64-v3
[2024-02-08 06:21:49] 2024-02-08 11:21:29,750 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6102285011/memory_monitor_summary.json (trf name=prmon)
[2024-02-08 06:21:49] 2024-02-08 11:21:29,750 | INFO     | extracted standard info from prmon json
[2024-02-08 06:21:49] 2024-02-08 11:21:29,750 | INFO     | extracted standard memory fields from prmon json
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | WARNING  | wrong length of table data, x=[1707390655.0, 1707390716.0], y=[1565207.0, 1590207.0] (must be same and length>=4)
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | ..............................
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | . Timing measurements:
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | . get job = 59 s
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | . initial setup = 77 s
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | . payload setup = 4 s
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | . stage-in = 56 s
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | . payload execution = 527 s
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | . stage-out = 410 s
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | . log creation = 0 s
[2024-02-08 06:21:49] 2024-02-08 11:21:29,751 | INFO     | ..............................
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | 
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | job summary report
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | --------------------------------------------------
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | PanDA job id: 6102285011
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | task id: NULL
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | errors: (none)
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | pilot state: finished 
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | transexitcode: 0
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | exeerrorcode: 0
[2024-02-08 06:21:49] 2024-02-08 11:21:29,780 | INFO     | exeerrordiag: 
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | exitcode: 0
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | exitmsg: OK
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | cpuconsumptiontime: 286 s
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | nevents: 2
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | neventsw: 0
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | pid: 565933
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | pgrp: 565933
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | corecount: 5
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | event service: False
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | sizes: {0: 2407198, 10: 2407344, 21: 2407372, 32: 2407400, 42: 2407428, 53: 2407456, 58: 2407672, 63: 2407700, 534: 2427421, 944: 2436541, 946: 2436707}
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | --------------------------------------------------
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | 
[2024-02-08 06:21:49] 2024-02-08 11:21:29,781 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,790 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | job 6102285011 has completed (purged errors)
[2024-02-08 06:21:49] 2024-02-08 11:21:29,791 | INFO     | overall cleanup function is called
[2024-02-08 06:21:49] 2024-02-08 11:21:30,797 | INFO     | --- collectZombieJob: --- 10, [565933]
[2024-02-08 06:21:49] 2024-02-08 11:21:30,797 | INFO     | zombie collector waiting for pid 565933
[2024-02-08 06:21:49] 2024-02-08 11:21:30,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-08 06:21:49] 2024-02-08 11:21:31,801 | INFO     | collected zombie processes
[2024-02-08 06:21:49] 2024-02-08 11:21:31,801 | INFO     | will now attempt to kill all subprocesses of pid=565933
[2024-02-08 06:21:49] 2024-02-08 11:21:31,840 | INFO     | process IDs to be killed: [565933] (in reverse order)
[2024-02-08 06:21:49] 2024-02-08 11:21:31,865 | WARNING  | found no corresponding commands to process id(s)
[2024-02-08 06:21:49] 2024-02-08 11:21:31,865 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-08 06:21:49] 2024-02-08 11:21:31,866 | INFO     | did not find any defunct processes belonging to 565933
[2024-02-08 06:21:49] 2024-02-08 11:21:31,868 | INFO     | did not find any defunct processes belonging to 565933
[2024-02-08 06:21:49] 2024-02-08 11:21:31,868 | INFO     | ready for new job
[2024-02-08 06:21:49] 2024-02-08 11:21:31,868 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-08 06:21:49] 2024-02-08 11:21:31,868 | INFO     | **************************************
[2024-02-08 06:21:49] 2024-02-08 11:21:31,868 | INFO     | ***  PanDA Pilot version 3.7.0.36  ***
[2024-02-08 06:21:49] 2024-02-08 11:21:31,868 | INFO     | **************************************
[2024-02-08 06:21:49] 2024-02-08 11:21:31,868 | INFO     | 
[2024-02-08 06:21:49] 2024-02-08 11:21:31,869 | INFO     | architecture information:
[2024-02-08 06:21:49] 2024-02-08 11:21:31,869 | INFO     | executing command: cat /etc/os-release
[2024-02-08 06:21:49] 2024-02-08 11:21:31,876 | INFO     | cat /etc/os-release:
[2024-02-08 06:21:49] NAME="CentOS Linux"
[2024-02-08 06:21:49] VERSION="7 (Core)"
[2024-02-08 06:21:49] ID="centos"
[2024-02-08 06:21:49] ID_LIKE="rhel fedora"
[2024-02-08 06:21:49] VERSION_ID="7"
[2024-02-08 06:21:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-08 06:21:49] ANSI_COLOR="0;31"
[2024-02-08 06:21:49] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-08 06:21:49] HOME_URL="https://www.centos.org/"
[2024-02-08 06:21:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-08 06:21:49] 
[2024-02-08 06:21:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-08 06:21:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-08 06:21:49] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-08 06:21:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-08 06:21:49] 
[2024-02-08 06:21:49] 2024-02-08 11:21:31,876 | INFO     | **************************************
[2024-02-08 06:21:49] 2024-02-08 11:21:32,379 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2024-02-08 06:21:49] 2024-02-08 11:21:32,388 | INFO     | sufficient remaining disk space (431587590144 B)
[2024-02-08 06:21:49] 2024-02-08 11:21:32,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-08 06:21:49] 2024-02-08 11:21:32,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-08 06:21:49] 2024-02-08 11:21:32,503 | INFO     | found 0 job(s) in 20 queues
[2024-02-08 06:21:49] 2024-02-08 11:21:32,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-08 06:21:49] 2024-02-08 11:21:32,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-08 06:21:49] 2024-02-08 11:21:32,738 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-02-08 06:21:49] 2024-02-08 11:21:32,738 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-02-08 06:21:49] 2024-02-08 11:21:32,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-08 06:21:49] 2024-02-08 11:21:32,738 | INFO     | will abort loop
[2024-02-08 06:21:49] 2024-02-08 11:21:33,394 | INFO     | [job] retrieve thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:33,497 | INFO     | [data] control thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:33,639 | INFO     | [payload] execute_payloads thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:33,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-08 06:21:49] 2024-02-08 11:21:33,730 | INFO     | [data] copytool_in thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:33,735 | INFO     | [job] validate thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:33,741 | INFO     | [job] job monitor thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:33,851 | INFO     | [job] create_data_payload thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:33,906 | INFO     | [payload] validate_pre thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:33,957 | INFO     | [payload] control thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:34,148 | INFO     | [payload] validate_post thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:34,183 | INFO     | [job] control thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:34,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-08 06:21:49] 2024-02-08 11:21:34,585 | INFO     | [payload] failed_post thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:34,791 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-08 06:21:49] 2024-02-08 11:21:35,671 | INFO     | [data] copytool_out thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:35,796 | INFO     | [job] queue monitor thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:38,209 | INFO     | [data] queue_monitor thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:42,741 | INFO     | job.realtimelogging is not enabled
[2024-02-08 06:21:49] 2024-02-08 11:21:43,746 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-08 06:21:49] 2024-02-08 11:21:44,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935597848384)>', '<ExcThread(monitor, started 139935218636544)>']
[2024-02-08 06:21:49] 2024-02-08 11:21:45,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-08 06:21:49] 2024-02-08 11:21:45,568 | INFO     | [monitor] control thread has ended
[2024-02-08 06:21:49] 2024-02-08 11:21:49,700 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-08 06:21:49] 2024-02-08 11:21:49,700 | INFO     | traces error code: 0
[2024-02-08 06:21:49] 2024-02-08 11:21:49,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-08 06:21:49] 2024-02-08 11:21:49,737 [wrapper] ==== pilot stdout END ====
[2024-02-08 06:21:49] 2024-02-08 11:21:49,739 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-08 06:21:49] 2024-02-08 11:21:49,740 [wrapper] pilotpid: 542992
[2024-02-08 06:21:49] 2024-02-08 11:21:49,741 [wrapper] Pilot exit status: 0
[2024-02-08 06:21:49] 2024-02-08 11:21:49,746 [wrapper] pandaids: 6102285011
[2024-02-08 06:21:49] 2024-02-08 11:21:49,761 [wrapper] cleanup: SIGTERM to supervisor_pilot  584761 542993
[2024-02-08 06:21:49] 2024-02-08 11:21:49,762 [wrapper] Test setup, not cleaning
[2024-02-08 06:21:49] 2024-02-08 11:21:49,763 [wrapper] ==== wrapper stdout END ====
[2024-02-08 06:21:49] 2024-02-08 11:21:49,765 [wrapper] ==== wrapper stderr END ====
[2024-02-08 06:21:49] 2024-02-08 11:21:49,767 [wrapper] apfmon messages muted
[2024-02-08 06:21:49]  *** Error codes and diagnostics ***
[2024-02-08 06:21:49]     "exeErrorCode": 0,
[2024-02-08 06:21:49]     "exeErrorDiag": "",
[2024-02-08 06:21:49]     "pilotErrorCode": 0,
[2024-02-08 06:21:49]     "pilotErrorDiag": "",
[2024-02-08 06:21:49]  *** Listing of results directory ***
[2024-02-08 06:21:49] total 44708
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc     4388 Feb  8 04:57 queuedata.json
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc   441289 Feb  8 04:57 pilot3.tar.gz
[2024-02-08 06:21:49] -rwx------ 1 boinc boinc    31345 Feb  8 04:58 runpilot2-wrapper.sh
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc      107 Feb  8 06:02 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-08 06:21:49] -rwxr-xr-x 1 boinc boinc     7986 Feb  8 06:02 run_atlas
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc      112 Feb  8 06:02 job.xml
[2024-02-08 06:21:49] -rw-r--r-- 2 boinc boinc    17618 Feb  8 06:02 start_atlas.sh
[2024-02-08 06:21:49] drwxrwx--x 2 boinc boinc     4096 Feb  8 06:02 shared
[2024-02-08 06:21:49] -rw-r--r-- 2 boinc boinc   453827 Feb  8 06:02 input.tar.gz
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc     9517 Feb  8 06:02 init_data.xml
[2024-02-08 06:21:49] -rw-r--r-- 2 boinc boinc 37658468 Feb  8 06:02 EVNT.04972714._000029.pool.root.1
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc        0 Feb  8 06:02 boinc_lockfile
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc     2756 Feb  8 06:02 pandaJob.out
[2024-02-08 06:21:49] -rw------- 1 boinc boinc      424 Feb  8 06:02 setup.sh.local
[2024-02-08 06:21:49] -rw------- 1 boinc boinc  1342081 Feb  8 06:03 cric_ddmendpoints.json
[2024-02-08 06:21:49] -rw------- 1 boinc boinc   960233 Feb  8 06:03 agis_schedconf.cvmfs.json
[2024-02-08 06:21:49] drwx------ 4 boinc boinc     4096 Feb  8 06:04 pilot3
[2024-02-08 06:21:49] -rw------- 1 boinc boinc  2043626 Feb  8 06:14 output.1.5e494305-d36e-407e-972d-37a44d9f9284_38806.pool.root
[2024-02-08 06:21:49] -rw------- 1 boinc boinc     1001 Feb  8 06:14 memory_monitor_summary.json
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc      532 Feb  8 06:14 boinc_task_state.xml
[2024-02-08 06:21:49] -rw------- 1 boinc boinc   151647 Feb  8 06:18 5e494305-d36e-407e-972d-37a44d9f9284_38806.1.job.log.tgz
[2024-02-08 06:21:49] -rw------- 1 boinc boinc     6619 Feb  8 06:21 heartbeat.json
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc     8192 Feb  8 06:21 boinc_mmap_file
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc       25 Feb  8 06:21 wrapper_checkpoint.txt
[2024-02-08 06:21:49] -rw------- 1 boinc boinc     4167 Feb  8 06:21 pilotlog.txt
[2024-02-08 06:21:49] -rw------- 1 boinc boinc   152906 Feb  8 06:21 5e494305-d36e-407e-972d-37a44d9f9284_38806.1.job.log
[2024-02-08 06:21:49] -rw------- 1 boinc boinc      464 Feb  8 06:21 output.list
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc      748 Feb  8 06:21 runtime_log
[2024-02-08 06:21:49] -rw------- 1 boinc boinc  2365440 Feb  8 06:21 result.tar.gz
[2024-02-08 06:21:49] -rw------- 1 boinc boinc      625 Feb  8 06:21 uIsNDmxLGs4n7Olcko1bjSoqABFKDmABFKDmyeZQDmhbKKDmGLsxjm.diag
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc    12103 Feb  8 06:21 runtime_log.err
[2024-02-08 06:21:49] -rw-r--r-- 1 boinc boinc    23355 Feb  8 06:21 stderr.txt
[2024-02-08 06:21:49] HITS file was successfully produced:
[2024-02-08 06:21:49] -rw------- 1 boinc boinc 2043626 Feb  8 06:14 shared/HITS.pool.root.1
[2024-02-08 06:21:49]  *** Contents of shared directory: ***
[2024-02-08 06:21:49] total 41548
[2024-02-08 06:21:49] -rw-r--r-- 2 boinc boinc    17618 Feb  8 06:02 start_atlas.sh
[2024-02-08 06:21:49] -rw-r--r-- 2 boinc boinc   453827 Feb  8 06:02 input.tar.gz
[2024-02-08 06:21:49] -rw-r--r-- 2 boinc boinc 37658468 Feb  8 06:02 ATLAS.root_0
[2024-02-08 06:21:49] -rw------- 1 boinc boinc  2043626 Feb  8 06:14 HITS.pool.root.1
[2024-02-08 06:21:49] -rw------- 1 boinc boinc  2365440 Feb  8 06:21 result.tar.gz
06:21:51 (537292): run_atlas exited; CPU time 283.899353
06:21:51 (537292): called boinc_finish(0)

</stderr_txt>
]]>

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