Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
18:47:29 (3854309): wrapper (7.7.26015): starting
18:47:29 (3854309): wrapper: running run_atlas (--nthreads 5)
[2024-02-11 18:47:29] Arguments: --nthreads 5
[2024-02-11 18:47:29] Threads: 5
[2024-02-11 18:47:29] Checking for CVMFS
[2024-02-11 18:47:30] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-11 18:47:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-11 18:47:32] Running cvmfs_config stat atlas.cern.ch
[2024-02-11 18:47:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-11 18:47:32] 2.11.2.0 3854444 0 25200 129282 3 1 4044988 4096000 0 130560 0 0 0.000 964 1188 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-11 18:47:32] CVMFS is ok
[2024-02-11 18:47:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-11 18:47:32] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-11 18:47:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-11 18:47:32] Further information can be found at the LHC@home message board.
[2024-02-11 18:47:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-11 18:47:32] Checking for apptainer binary...
[2024-02-11 18:47:32] apptainer is not installed, using version from CVMFS
[2024-02-11 18:47:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-11 18:47:39] x32-kubuntu-7950X
[2024-02-11 18:47:39] apptainer works
[2024-02-11 18:47:39] Set ATHENA_PROC_NUMBER=5
[2024-02-11 18:47:39] Set ATHENA_CORE_NUMBER=5
[2024-02-11 18:47:39] Starting ATLAS job with PandaID=6105742844
[2024-02-11 18:47:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-11 19:15:40]  *** The last 200 lines of the pilot log: ***
[2024-02-11 19:15:40] 2024-02-12 00:14:39,015 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:14:40,535 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-11 19:15:40] 2024-02-12 00:14:40,872 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-11 19:15:40] 2024-02-12 00:14:40,872 | INFO     | will try again after 31s..
[2024-02-11 19:15:40] 2024-02-12 00:14:41,518 | INFO     | monitor loop #226: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:14:41,527 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:14:44,029 | INFO     | monitor loop #227: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:14:44,029 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:14:46,531 | INFO     | monitor loop #228: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:14:46,531 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:14:49,034 | INFO     | monitor loop #229: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:14:49,034 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:14:51,537 | INFO     | monitor loop #230: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:14:51,537 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:14:54,039 | INFO     | monitor loop #231: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:14:54,039 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:14:56,542 | INFO     | monitor loop #232: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:14:56,542 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:14:59,043 | INFO     | monitor loop #233: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:14:59,043 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:15:01,546 | INFO     | monitor loop #234: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:15:01,546 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:15:04,047 | INFO     | monitor loop #235: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:15:04,047 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:15:06,550 | INFO     | monitor loop #236: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:15:06,550 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:15:09,053 | INFO     | monitor loop #237: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:15:09,053 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:15:11,555 | INFO     | monitor loop #238: job 0:6105742844 is in state 'stageout'
[2024-02-11 19:15:40] 2024-02-12 00:15:11,555 | WARNING  | aborting job monitor tasks since payload process 3865665 is not running
[2024-02-11 19:15:40] 2024-02-12 00:15:11,971 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-11 19:15:40] 2024-02-12 00:15:12,304 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-11 19:15:40] 2024-02-12 00:15:12,304 | WARNING  | cache file=/var/lib/boinc-client/slots/13/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/13/ag
[2024-02-11 19:15:40] 2024-02-12 00:15:12,326 | INFO     | transferring file 41d988e5-028a-4456-b8de-1188f243dde4_92168.1.job.log.tgz from /var/lib/boinc-client/slots/13/PanDA_Pilot-6105742844/41d988e5-028a-4456-b8de-1188f
[2024-02-11 19:15:40] 2024-02-12 00:15:12,326 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/13/PanDA_Pilot-6105742844/41d988e5-028a-4456-b8de-1188f243dde4_92168.1.job.log.tgz /var/lib/boinc-cl
[2024-02-11 19:15:40] 2024-02-12 00:15:12,337 | INFO     | Adding to output.list: 41d988e5-028a-4456-b8de-1188f243dde4_92168.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/c1/35/41d988e5-028a-
[2024-02-11 19:15:40] 2024-02-12 00:15:12,337 | INFO     | summary of transferred files:
[2024-02-11 19:15:40] 2024-02-12 00:15:12,337 | INFO     |  -- lfn=41d988e5-028a-4456-b8de-1188f243dde4_92168.1.job.log.tgz, status_code=0, status=transferred
[2024-02-11 19:15:40] 2024-02-12 00:15:12,337 | INFO     | stage-out finished correctly
[2024-02-11 19:15:40] 2024-02-12 00:15:14,058 | INFO     | monitor loop #239: job 0:6105742844 is in state 'finished'
[2024-02-11 19:15:40] 2024-02-12 00:15:14,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-11 19:15:40] 2024-02-12 00:15:14,895 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-11 19:15:40] 2024-02-12 00:15:16,559 | INFO     | monitor loop #240: job 0:6105742844 is in state 'finished'
[2024-02-11 19:15:40] 2024-02-12 00:15:16,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-11 19:15:40] 2024-02-12 00:15:17,715 | INFO     | job 6105742844 has state=finished
[2024-02-11 19:15:40] 2024-02-12 00:15:17,715 | INFO     | preparing for final server update for job 6105742844 in state='finished'
[2024-02-11 19:15:40] 2024-02-12 00:15:17,716 | INFO     | this job has now completed (state=finished)
[2024-02-11 19:15:40] 2024-02-12 00:15:17,716 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-11 19:15:40] 2024-02-12 00:15:17,716 | INFO     | job 6105742844 has finished - writing final server update
[2024-02-11 19:15:40] 2024-02-12 00:15:17,716 | INFO     | total number of processed events: 2 (read)
[2024-02-11 19:15:40] 2024-02-12 00:15:17,717 | INFO     | executing command: lscpu
[2024-02-11 19:15:40] 2024-02-12 00:15:17,734 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-11 19:15:40] 2024-02-12 00:15:17,734 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-11 19:15:40] 2024-02-12 00:15:17,754 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-11 19:15:40] 2024-02-12 00:15:19,062 | INFO     | monitor loop #241: job 0:6105742844 is in state 'finished'
[2024-02-11 19:15:40] 2024-02-12 00:15:19,062 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-11 19:15:40] 2024-02-12 00:15:19,507 | INFO     | CPU arch script returned: x86-64-v4
[2024-02-11 19:15:40] 2024-02-12 00:15:19,507 | INFO     | using path: /var/lib/boinc-client/slots/13/PanDA_Pilot-6105742844/memory_monitor_summary.json (trf name=prmon)
[2024-02-11 19:15:40] 2024-02-12 00:15:19,508 | INFO     | extracted standard info from prmon json
[2024-02-11 19:15:40] 2024-02-12 00:15:19,508 | INFO     | extracted standard memory fields from prmon json
[2024-02-11 19:15:40] 2024-02-12 00:15:19,508 | INFO     | fitting pss+swap vs Time
[2024-02-11 19:15:40] 2024-02-12 00:15:19,508 | INFO     | current memory leak: 1600.71 B/s (using 11 data points, chi2=0.08)
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | ..............................
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | . Timing measurements:
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | . get job = 42 s
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | . initial setup = 63 s
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | . payload setup = 28 s
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | . stage-in = 60 s
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | . payload execution = 1050 s
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | . stage-out = 353 s
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | . log creation = 0 s
[2024-02-11 19:15:40] 2024-02-12 00:15:19,509 | INFO     | ..............................
[2024-02-11 19:15:40] 2024-02-12 00:15:19,547 | INFO     | 
[2024-02-11 19:15:40] 2024-02-12 00:15:19,547 | INFO     | job summary report
[2024-02-11 19:15:40] 2024-02-12 00:15:19,547 | INFO     | --------------------------------------------------
[2024-02-11 19:15:40] 2024-02-12 00:15:19,547 | INFO     | PanDA job id: 6105742844
[2024-02-11 19:15:40] 2024-02-12 00:15:19,547 | INFO     | task id: NULL
[2024-02-11 19:15:40] 2024-02-12 00:15:19,547 | INFO     | errors: (none)
[2024-02-11 19:15:40] 2024-02-12 00:15:19,547 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | pilot state: finished 
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | transexitcode: 0
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | exeerrorcode: 0
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | exeerrordiag: 
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | exitcode: 0
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | exitmsg: OK
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | cpuconsumptiontime: 362 s
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | nevents: 2
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | neventsw: 0
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | pid: 3865665
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | pgrp: 3865665
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | corecount: 5
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | event service: False
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | sizes: {0: 2407023, 1: 2407222, 11: 2407368, 22: 2407396, 32: 2407424, 43: 2407452, 53: 2407608, 63: 2407696, 64: 2407724, 1082: 2427421, 1435: 2436487, 1438: 2436
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | --------------------------------------------------
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | 
[2024-02-11 19:15:40] 2024-02-12 00:15:19,548 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/13
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,557 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | job 6105742844 has completed (purged errors)
[2024-02-11 19:15:40] 2024-02-12 00:15:19,558 | INFO     | overall cleanup function is called
[2024-02-11 19:15:40] 2024-02-12 00:15:20,563 | INFO     | --- collectZombieJob: --- 10, [3865665]
[2024-02-11 19:15:40] 2024-02-12 00:15:20,563 | INFO     | zombie collector waiting for pid 3865665
[2024-02-11 19:15:40] 2024-02-12 00:15:20,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-11 19:15:40] 2024-02-12 00:15:21,564 | INFO     | collected zombie processes
[2024-02-11 19:15:40] 2024-02-12 00:15:21,564 | INFO     | will now attempt to kill all subprocesses of pid=3865665
[2024-02-11 19:15:40] 2024-02-12 00:15:21,602 | INFO     | process IDs to be killed: [3865665] (in reverse order)
[2024-02-11 19:15:40] 2024-02-12 00:15:21,632 | WARNING  | found no corresponding commands to process id(s)
[2024-02-11 19:15:40] 2024-02-12 00:15:21,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-11 19:15:40] 2024-02-12 00:15:21,634 | INFO     | did not find any defunct processes belonging to 3865665
[2024-02-11 19:15:40] 2024-02-12 00:15:21,636 | INFO     | did not find any defunct processes belonging to 3865665
[2024-02-11 19:15:40] 2024-02-12 00:15:21,636 | INFO     | ready for new job
[2024-02-11 19:15:40] 2024-02-12 00:15:21,636 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-11 19:15:40] 2024-02-12 00:15:21,636 | INFO     | **************************************
[2024-02-11 19:15:40] 2024-02-12 00:15:21,636 | INFO     | ***  PanDA Pilot version 3.7.0.36  ***
[2024-02-11 19:15:40] 2024-02-12 00:15:21,636 | INFO     | **************************************
[2024-02-11 19:15:40] 2024-02-12 00:15:21,636 | INFO     | 
[2024-02-11 19:15:40] 2024-02-12 00:15:21,637 | INFO     | architecture information:
[2024-02-11 19:15:40] 2024-02-12 00:15:21,638 | INFO     | executing command: cat /etc/os-release
[2024-02-11 19:15:40] 2024-02-12 00:15:21,644 | INFO     | cat /etc/os-release:
[2024-02-11 19:15:40] NAME="CentOS Linux"
[2024-02-11 19:15:40] VERSION="7 (Core)"
[2024-02-11 19:15:40] ID="centos"
[2024-02-11 19:15:40] ID_LIKE="rhel fedora"
[2024-02-11 19:15:40] VERSION_ID="7"
[2024-02-11 19:15:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-11 19:15:40] ANSI_COLOR="0;31"
[2024-02-11 19:15:40] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-11 19:15:40] HOME_URL="https://www.centos.org/"
[2024-02-11 19:15:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-11 19:15:40] 
[2024-02-11 19:15:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-11 19:15:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-11 19:15:40] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-11 19:15:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-11 19:15:40] 
[2024-02-11 19:15:40] 2024-02-12 00:15:21,644 | INFO     | **************************************
[2024-02-11 19:15:40] 2024-02-12 00:15:22,147 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/13
[2024-02-11 19:15:40] 2024-02-12 00:15:22,158 | INFO     | sufficient remaining disk space (904540454912 B)
[2024-02-11 19:15:40] 2024-02-12 00:15:22,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-11 19:15:40] 2024-02-12 00:15:22,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-11 19:15:40] 2024-02-12 00:15:22,158 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-02-11 19:15:40] 2024-02-12 00:15:22,158 | INFO     | found 0 job(s) in 20 queues
[2024-02-11 19:15:40] 2024-02-12 00:15:22,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-11 19:15:40] 2024-02-12 00:15:22,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-11 19:15:40] 2024-02-12 00:15:22,567 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-11 19:15:40] 2024-02-12 00:15:22,567 | INFO     | aborting loop
[2024-02-11 19:15:40] 2024-02-12 00:15:22,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-11 19:15:40] 2024-02-12 00:15:23,159 | INFO     | [job] retrieve thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:23,259 | INFO     | [payload] control thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:23,299 | INFO     | [data] control thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:23,315 | INFO     | [job] validate thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:23,345 | INFO     | [payload] failed_post thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:23,439 | INFO     | [job] create_data_payload thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:23,491 | INFO     | [payload] validate_pre thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:23,571 | INFO     | [job] job monitor thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:23,791 | INFO     | [payload] validate_post thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:24,051 | INFO     | [job] control thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:24,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-11 19:15:40] 2024-02-12 00:15:24,619 | INFO     | [data] copytool_in thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:24,655 | INFO     | [payload] execute_payloads thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:24,888 | INFO     | [data] copytool_out thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:25,438 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-11 19:15:40] 2024-02-12 00:15:25,559 | INFO     | [job] queue monitor thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:29,443 | INFO     | [data] queue_monitor thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:32,495 | INFO     | job.realtimelogging is not enabled
[2024-02-11 19:15:40] 2024-02-12 00:15:33,499 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-11 19:15:40] 2024-02-12 00:15:35,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937714345792)>', '<ExcThread(monitor, started 139937072539392)>']
[2024-02-11 19:15:40] 2024-02-12 00:15:36,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-11 19:15:40] 2024-02-12 00:15:36,211 | INFO     | [monitor] control thread has ended
[2024-02-11 19:15:40] 2024-02-12 00:15:40,495 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-11 19:15:40] 2024-02-12 00:15:40,495 | INFO     | traces error code: 0
[2024-02-11 19:15:40] 2024-02-12 00:15:40,495 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-11 19:15:40] 2024-02-12 00:15:40,529 [wrapper] ==== pilot stdout END ====
[2024-02-11 19:15:40] 2024-02-12 00:15:40,531 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-11 19:15:40] 2024-02-12 00:15:40,532 [wrapper] pilotpid: 3858460
[2024-02-11 19:15:40] 2024-02-12 00:15:40,533 [wrapper] Pilot exit status: 0
[2024-02-11 19:15:40] 2024-02-12 00:15:40,538 [wrapper] pandaids: 6105742844
[2024-02-11 19:15:40] 2024-02-12 00:15:40,555 [wrapper] cleanup: SIGTERM to supervisor_pilot 3877152 3858461
[2024-02-11 19:15:40] 2024-02-12 00:15:40,557 [wrapper] Test setup, not cleaning
[2024-02-11 19:15:40] 2024-02-12 00:15:40,558 [wrapper] ==== wrapper stdout END ====
[2024-02-11 19:15:40] 2024-02-12 00:15:40,559 [wrapper] ==== wrapper stderr END ====
[2024-02-11 19:15:40] 2024-02-12 00:15:40,561 [wrapper] apfmon messages muted
[2024-02-11 19:15:40]  *** Error codes and diagnostics ***
[2024-02-11 19:15:40]     "exeErrorCode": 0,
[2024-02-11 19:15:40]     "exeErrorDiag": "",
[2024-02-11 19:15:40]     "pilotErrorCode": 0,
[2024-02-11 19:15:40]     "pilotErrorDiag": "",
[2024-02-11 19:15:40]  *** Listing of results directory ***
[2024-02-11 19:15:40] total 46420
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc   441289 Feb 10 19:53 pilot3.tar.gz
[2024-02-11 19:15:40] -rwx------ 1 boinc boinc    31345 Feb 10 19:59 runpilot2-wrapper.sh
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc     4388 Feb 10 19:59 queuedata.json
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc      107 Feb 11 18:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-11 19:15:40] -rwxr-xr-x 1 boinc boinc     7986 Feb 11 18:47 run_atlas
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc      112 Feb 11 18:47 job.xml
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc     9518 Feb 11 18:47 init_data.xml
[2024-02-11 19:15:40] -rw-r--r-- 2 boinc boinc 38217911 Feb 11 18:47 EVNT.04972714._000030.pool.root.1
[2024-02-11 19:15:40] -rw-r--r-- 2 boinc boinc    17618 Feb 11 18:47 start_atlas.sh
[2024-02-11 19:15:40] drwxrwx--x 2 boinc boinc     4096 Feb 11 18:47 shared
[2024-02-11 19:15:40] -rw-r--r-- 2 boinc boinc   453815 Feb 11 18:47 input.tar.gz
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc        0 Feb 11 18:47 boinc_lockfile
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc     2753 Feb 11 18:47 pandaJob.out
[2024-02-11 19:15:40] -rw------- 1 boinc boinc      424 Feb 11 18:47 setup.sh.local
[2024-02-11 19:15:40] -rw------- 1 boinc boinc  1341937 Feb 11 18:49 cric_ddmendpoints.json
[2024-02-11 19:15:40] -rw------- 1 boinc boinc   956385 Feb 11 18:49 agis_schedconf.cvmfs.json
[2024-02-11 19:15:40] drwx------ 4 boinc boinc     4096 Feb 11 18:50 pilot3
[2024-02-11 19:15:40] -rw------- 1 boinc boinc  2589875 Feb 11 19:09 output.1.41d988e5-028a-4456-b8de-1188f243dde4_92168.pool.root
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc      533 Feb 11 19:09 boinc_task_state.xml
[2024-02-11 19:15:40] -rw------- 1 boinc boinc     1005 Feb 11 19:09 memory_monitor_summary.json
[2024-02-11 19:15:40] -rw------- 1 boinc boinc   156424 Feb 11 19:12 41d988e5-028a-4456-b8de-1188f243dde4_92168.1.job.log.tgz
[2024-02-11 19:15:40] -rw------- 1 boinc boinc     6615 Feb 11 19:15 heartbeat.json
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc     8192 Feb 11 19:15 boinc_mmap_file
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc       25 Feb 11 19:15 wrapper_checkpoint.txt
[2024-02-11 19:15:40] -rw------- 1 boinc boinc     4105 Feb 11 19:15 pilotlog.txt
[2024-02-11 19:15:40] -rw------- 1 boinc boinc   197723 Feb 11 19:15 41d988e5-028a-4456-b8de-1188f243dde4_92168.1.job.log
[2024-02-11 19:15:40] -rw------- 1 boinc boinc      464 Feb 11 19:15 output.list
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc      748 Feb 11 19:15 runtime_log
[2024-02-11 19:15:40] -rw------- 1 boinc boinc  2959360 Feb 11 19:15 result.tar.gz
[2024-02-11 19:15:40] -rw------- 1 boinc boinc      632 Feb 11 19:15 UT4KDmFNDt4n7Olcko1bjSoqABFKDmABFKDmyeZQDmnhKKDm8Y9gAo.diag
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc    12151 Feb 11 19:15 runtime_log.err
[2024-02-11 19:15:40] -rw-r--r-- 1 boinc boinc    23384 Feb 11 19:15 stderr.txt
[2024-02-11 19:15:40] HITS file was successfully produced:
[2024-02-11 19:15:40] -rw------- 1 boinc boinc 2589875 Feb 11 19:09 shared/HITS.pool.root.1
[2024-02-11 19:15:40]  *** Contents of shared directory: ***
[2024-02-11 19:15:40] total 43216
[2024-02-11 19:15:40] -rw-r--r-- 2 boinc boinc 38217911 Feb 11 18:47 ATLAS.root_0
[2024-02-11 19:15:40] -rw-r--r-- 2 boinc boinc    17618 Feb 11 18:47 start_atlas.sh
[2024-02-11 19:15:40] -rw-r--r-- 2 boinc boinc   453815 Feb 11 18:47 input.tar.gz
[2024-02-11 19:15:40] -rw------- 1 boinc boinc  2589875 Feb 11 19:09 HITS.pool.root.1
[2024-02-11 19:15:40] -rw------- 1 boinc boinc  2959360 Feb 11 19:15 result.tar.gz
19:15:42 (3854309): run_atlas exited; CPU time 356.108759
19:15:42 (3854309): called boinc_finish(0)

</stderr_txt>
]]>

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