Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
19:16:59 (3912266): wrapper (7.7.26015): starting
19:16:59 (3912266): wrapper: running run_atlas (--nthreads 5)
[2024-02-11 19:16:59] Arguments: --nthreads 5
[2024-02-11 19:16:59] Threads: 5
[2024-02-11 19:16:59] Checking for CVMFS
[2024-02-11 19:16:59] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-11 19:16:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-11 19:16:59] Running cvmfs_config stat atlas.cern.ch
[2024-02-11 19:16:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-11 19:16:59] 2.11.2.0 3854444 29 42608 129282 2 75 3253739 4096001 178 130560 0 174362 97.239 523650 1259 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-11 19:16:59] CVMFS is ok
[2024-02-11 19:16:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-11 19:16:59] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-11 19:16:59] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-11 19:16:59] Further information can be found at the LHC@home message board.
[2024-02-11 19:16:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-11 19:16:59] Checking for apptainer binary...
[2024-02-11 19:16:59] apptainer is not installed, using version from CVMFS
[2024-02-11 19:16:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-11 19:16:59] x32-kubuntu-7950X
[2024-02-11 19:16:59] apptainer works
[2024-02-11 19:16:59] Set ATHENA_PROC_NUMBER=5
[2024-02-11 19:16:59] Set ATHENA_CORE_NUMBER=5
[2024-02-11 19:16:59] Starting ATLAS job with PandaID=6106484813
[2024-02-11 19:16:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-11 19:34:14]  *** The last 200 lines of the pilot log: ***
[2024-02-11 19:34:14] 2024-02-12 00:33:07,902 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:10,405 | INFO     | monitor loop #163: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:10,405 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:12,907 | INFO     | monitor loop #164: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:12,907 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:15,410 | INFO     | monitor loop #165: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:15,410 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:17,911 | INFO     | monitor loop #166: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:17,911 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:20,414 | INFO     | monitor loop #167: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:20,414 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:22,915 | INFO     | monitor loop #168: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:22,915 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:24,595 | INFO     | [attempt=2/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-11 19:34:14] 2024-02-12 00:33:25,234 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-11 19:34:14] 2024-02-12 00:33:25,235 | INFO     | will try again after 21s..
[2024-02-11 19:34:14] 2024-02-12 00:33:25,418 | INFO     | monitor loop #169: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:25,418 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:27,919 | INFO     | monitor loop #170: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:27,919 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:30,422 | INFO     | monitor loop #171: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:30,431 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:32,931 | INFO     | monitor loop #172: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:32,931 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:35,434 | INFO     | monitor loop #173: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:35,434 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:37,943 | INFO     | monitor loop #174: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:37,943 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:40,446 | INFO     | monitor loop #175: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:40,446 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:42,955 | INFO     | monitor loop #176: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:42,955 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:45,458 | INFO     | monitor loop #177: job 0:6106484813 is in state 'stageout'
[2024-02-11 19:34:14] 2024-02-12 00:33:45,458 | WARNING  | aborting job monitor tasks since payload process 3923261 is not running
[2024-02-11 19:34:14] 2024-02-12 00:33:46,331 | INFO     | [attempt=3/3] loading data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json
[2024-02-11 19:34:14] 2024-02-12 00:33:46,558 | WARNING  | failed to load data from url=https://atlas-cric.cern.ch/cache/ddmendpoints.json, error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: 
[2024-02-11 19:34:14] 2024-02-12 00:33:46,558 | WARNING  | cache file=/var/lib/boinc-client/slots/6/agis_ddmendpoints.agis.ALL.json is not available: [Errno 2] No such file or directory: '/var/lib/boinc-client/slots/6/agis
[2024-02-11 19:34:14] 2024-02-12 00:33:46,581 | INFO     | transferring file 9d2ffd86-4afb-4862-b785-e0fc4c11dbdc_8897.1.job.log.tgz from /var/lib/boinc-client/slots/6/PanDA_Pilot-6106484813/9d2ffd86-4afb-4862-b785-e0fc4c1
[2024-02-11 19:34:14] 2024-02-12 00:33:46,581 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/6/PanDA_Pilot-6106484813/9d2ffd86-4afb-4862-b785-e0fc4c11dbdc_8897.1.job.log.tgz /var/lib/boinc-clie
[2024-02-11 19:34:14] 2024-02-12 00:33:46,590 | INFO     | Adding to output.list: 9d2ffd86-4afb-4862-b785-e0fc4c11dbdc_8897.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/d1/57/9d2ffd86-4afb-4
[2024-02-11 19:34:14] 2024-02-12 00:33:46,591 | INFO     | summary of transferred files:
[2024-02-11 19:34:14] 2024-02-12 00:33:46,591 | INFO     |  -- lfn=9d2ffd86-4afb-4862-b785-e0fc4c11dbdc_8897.1.job.log.tgz, status_code=0, status=transferred
[2024-02-11 19:34:14] 2024-02-12 00:33:46,591 | INFO     | stage-out finished correctly
[2024-02-11 19:34:14] 2024-02-12 00:33:46,626 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-11 19:34:14] 2024-02-12 00:33:47,969 | INFO     | monitor loop #178: job 0:6106484813 is in state 'finished'
[2024-02-11 19:34:14] 2024-02-12 00:33:47,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-11 19:34:14] 2024-02-12 00:33:48,231 | INFO     | job 6106484813 has state=finished
[2024-02-11 19:34:14] 2024-02-12 00:33:48,231 | INFO     | preparing for final server update for job 6106484813 in state='finished'
[2024-02-11 19:34:14] 2024-02-12 00:33:48,232 | INFO     | this job has now completed (state=finished)
[2024-02-11 19:34:14] 2024-02-12 00:33:48,232 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-11 19:34:14] 2024-02-12 00:33:48,232 | INFO     | job 6106484813 has finished - writing final server update
[2024-02-11 19:34:14] 2024-02-12 00:33:48,232 | INFO     | total number of processed events: 2 (read)
[2024-02-11 19:34:14] 2024-02-12 00:33:48,233 | INFO     | executing command: lscpu
[2024-02-11 19:34:14] 2024-02-12 00:33:48,251 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-11 19:34:14] 2024-02-12 00:33:48,252 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-11 19:34:14] 2024-02-12 00:33:48,270 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-11 19:34:14] 2024-02-12 00:33:50,101 | INFO     | CPU arch script returned: x86-64-v4
[2024-02-11 19:34:14] 2024-02-12 00:33:50,102 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6106484813/memory_monitor_summary.json (trf name=prmon)
[2024-02-11 19:34:14] 2024-02-12 00:33:50,102 | INFO     | extracted standard info from prmon json
[2024-02-11 19:34:14] 2024-02-12 00:33:50,102 | INFO     | extracted standard memory fields from prmon json
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | WARNING  | wrong length of table data, x=[1707697536.0], y=[1118563.0] (must be same and length>=4)
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | ..............................
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | . Timing measurements:
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | . get job = 68 s
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | . initial setup = 68 s
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | . payload setup = 4 s
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | . stage-in = 55 s
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | . payload execution = 451 s
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | . stage-out = 342 s
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | . log creation = 0 s
[2024-02-11 19:34:14] 2024-02-12 00:33:50,103 | INFO     | ..............................
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | 
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | job summary report
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | --------------------------------------------------
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | PanDA job id: 6106484813
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | task id: NULL
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | errors: (none)
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | pilot state: finished 
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | transexitcode: 0
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | exeerrorcode: 0
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | exeerrordiag: 
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | exitcode: 0
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | exitmsg: OK
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | cpuconsumptiontime: 185 s
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | nevents: 2
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | neventsw: 0
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | pid: 3923261
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | pgrp: 3923261
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | corecount: 5
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | event service: False
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | sizes: {0: 2407184, 11: 2407330, 21: 2407358, 32: 2407386, 42: 2407414, 53: 2407442, 58: 2407658, 64: 2407686, 459: 2429833, 802: 2438949, 805: 2439115}
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | --------------------------------------------------
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | 
[2024-02-11 19:34:14] 2024-02-12 00:33:50,143 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2024-02-11 19:34:14] 2024-02-12 00:33:50,159 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | job 6106484813 has completed (purged errors)
[2024-02-11 19:34:14] 2024-02-12 00:33:50,160 | INFO     | overall cleanup function is called
[2024-02-11 19:34:14] 2024-02-12 00:33:51,163 | INFO     | --- collectZombieJob: --- 10, [3923261]
[2024-02-11 19:34:14] 2024-02-12 00:33:51,163 | INFO     | zombie collector waiting for pid 3923261
[2024-02-11 19:34:14] 2024-02-12 00:33:51,163 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-11 19:34:14] 2024-02-12 00:33:52,167 | INFO     | collected zombie processes
[2024-02-11 19:34:14] 2024-02-12 00:33:52,167 | INFO     | will now attempt to kill all subprocesses of pid=3923261
[2024-02-11 19:34:14] 2024-02-12 00:33:52,207 | INFO     | process IDs to be killed: [3923261] (in reverse order)
[2024-02-11 19:34:14] 2024-02-12 00:33:52,241 | WARNING  | found no corresponding commands to process id(s)
[2024-02-11 19:34:14] 2024-02-12 00:33:52,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-11 19:34:14] 2024-02-12 00:33:52,242 | INFO     | did not find any defunct processes belonging to 3923261
[2024-02-11 19:34:14] 2024-02-12 00:33:52,244 | INFO     | did not find any defunct processes belonging to 3923261
[2024-02-11 19:34:14] 2024-02-12 00:33:52,244 | INFO     | ready for new job
[2024-02-11 19:34:14] 2024-02-12 00:33:52,244 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-11 19:34:14] 2024-02-12 00:33:52,245 | INFO     | **************************************
[2024-02-11 19:34:14] 2024-02-12 00:33:52,245 | INFO     | ***  PanDA Pilot version 3.7.0.36  ***
[2024-02-11 19:34:14] 2024-02-12 00:33:52,245 | INFO     | **************************************
[2024-02-11 19:34:14] 2024-02-12 00:33:52,245 | INFO     | 
[2024-02-11 19:34:14] 2024-02-12 00:33:52,246 | INFO     | architecture information:
[2024-02-11 19:34:14] 2024-02-12 00:33:52,246 | INFO     | executing command: cat /etc/os-release
[2024-02-11 19:34:14] 2024-02-12 00:33:52,260 | INFO     | cat /etc/os-release:
[2024-02-11 19:34:14] NAME="CentOS Linux"
[2024-02-11 19:34:14] VERSION="7 (Core)"
[2024-02-11 19:34:14] ID="centos"
[2024-02-11 19:34:14] ID_LIKE="rhel fedora"
[2024-02-11 19:34:14] VERSION_ID="7"
[2024-02-11 19:34:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-11 19:34:14] ANSI_COLOR="0;31"
[2024-02-11 19:34:14] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-11 19:34:14] HOME_URL="https://www.centos.org/"
[2024-02-11 19:34:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-11 19:34:14] 
[2024-02-11 19:34:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-11 19:34:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-11 19:34:14] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-11 19:34:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-11 19:34:14] 
[2024-02-11 19:34:14] 2024-02-12 00:33:52,261 | INFO     | **************************************
[2024-02-11 19:34:14] 2024-02-12 00:33:52,763 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2024-02-11 19:34:14] 2024-02-12 00:33:52,773 | INFO     | sufficient remaining disk space (904466006016 B)
[2024-02-11 19:34:14] 2024-02-12 00:33:52,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-11 19:34:14] 2024-02-12 00:33:52,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-11 19:34:14] 2024-02-12 00:33:52,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-11 19:34:14] 2024-02-12 00:33:52,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-11 19:34:14] 2024-02-12 00:33:52,979 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-02-11 19:34:14] 2024-02-12 00:33:52,979 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-02-11 19:34:14] 2024-02-12 00:33:52,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-11 19:34:14] 2024-02-12 00:33:52,979 | INFO     | will abort loop
[2024-02-11 19:34:14] 2024-02-12 00:33:53,144 | INFO     | found 0 job(s) in 20 queues
[2024-02-11 19:34:14] 2024-02-12 00:33:53,144 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-11 19:34:14] 2024-02-12 00:33:53,144 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-11 19:34:14] 2024-02-12 00:33:53,775 | INFO     | [job] retrieve thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:53,872 | INFO     | [data] control thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:53,984 | INFO     | [job] job monitor thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:54,027 | INFO     | [payload] control thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:54,235 | INFO     | [payload] validate_post thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:54,307 | INFO     | [data] copytool_in thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:54,489 | INFO     | [payload] failed_post thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:54,779 | INFO     | [data] copytool_out thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:54,871 | INFO     | [payload] execute_payloads thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:55,103 | INFO     | [job] validate thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:55,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-11 19:34:14] 2024-02-12 00:33:55,175 | INFO     | [job] control thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:55,187 | INFO     | [job] create_data_payload thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:55,248 | INFO     | [payload] validate_pre thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:56,158 | INFO     | [job] queue monitor thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:33:56,775 | INFO     | [data] queue_monitor thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:34:06,099 | INFO     | job.realtimelogging is not enabled
[2024-02-11 19:34:14] 2024-02-12 00:34:07,104 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-11 19:34:14] 2024-02-12 00:34:09,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140321604011840)>', '<ExcThread(monitor, started 140320742307584)>']
[2024-02-11 19:34:14] 2024-02-12 00:34:09,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-11 19:34:14] 2024-02-12 00:34:09,208 | INFO     | [monitor] control thread has ended
[2024-02-11 19:34:14] 2024-02-12 00:34:14,056 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-11 19:34:14] 2024-02-12 00:34:14,056 | INFO     | traces error code: 0
[2024-02-11 19:34:14] 2024-02-12 00:34:14,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-11 19:34:14] 2024-02-12 00:34:14,088 [wrapper] ==== pilot stdout END ====
[2024-02-11 19:34:14] 2024-02-12 00:34:14,089 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-11 19:34:14] 2024-02-12 00:34:14,091 [wrapper] pilotpid: 3916008
[2024-02-11 19:34:14] 2024-02-12 00:34:14,092 [wrapper] Pilot exit status: 0
[2024-02-11 19:34:14] 2024-02-12 00:34:14,097 [wrapper] pandaids: 6106484813
[2024-02-11 19:34:14] 2024-02-12 00:34:14,115 [wrapper] cleanup: SIGTERM to supervisor_pilot 3973522 3916009
[2024-02-11 19:34:14] 2024-02-12 00:34:14,116 [wrapper] Test setup, not cleaning
[2024-02-11 19:34:14] 2024-02-12 00:34:14,117 [wrapper] ==== wrapper stdout END ====
[2024-02-11 19:34:14] 2024-02-12 00:34:14,118 [wrapper] ==== wrapper stderr END ====
[2024-02-11 19:34:14] 2024-02-12 00:34:14,121 [wrapper] apfmon messages muted
[2024-02-11 19:34:14]  *** Error codes and diagnostics ***
[2024-02-11 19:34:14]     "exeErrorCode": 0,
[2024-02-11 19:34:14]     "exeErrorDiag": "",
[2024-02-11 19:34:14]     "pilotErrorCode": 0,
[2024-02-11 19:34:14]     "pilotErrorDiag": "",
[2024-02-11 19:34:14]  *** Listing of results directory ***
[2024-02-11 19:34:14] total 42916
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc   441289 Feb 11 18:42 pilot3.tar.gz
[2024-02-11 19:34:14] -rwx------ 1 boinc boinc    31345 Feb 11 19:11 runpilot2-wrapper.sh
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc     4388 Feb 11 19:11 queuedata.json
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc      107 Feb 11 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-11 19:34:14] -rwxr-xr-x 1 boinc boinc     7986 Feb 11 19:16 run_atlas
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc      112 Feb 11 19:16 job.xml
[2024-02-11 19:34:14] -rw-r--r-- 2 boinc boinc    17614 Feb 11 19:16 start_atlas.sh
[2024-02-11 19:34:14] drwxrwx--x 2 boinc boinc     4096 Feb 11 19:16 shared
[2024-02-11 19:34:14] -rw-r--r-- 2 boinc boinc   453821 Feb 11 19:16 input.tar.gz
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc     9517 Feb 11 19:16 init_data.xml
[2024-02-11 19:34:14] -rw-r--r-- 2 boinc boinc 37073557 Feb 11 19:16 EVNT.04972714._000021.pool.root.1
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc        0 Feb 11 19:16 boinc_lockfile
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc     2747 Feb 11 19:16 pandaJob.out
[2024-02-11 19:34:14] -rw------- 1 boinc boinc      424 Feb 11 19:17 setup.sh.local
[2024-02-11 19:34:14] -rw------- 1 boinc boinc  1341937 Feb 11 19:18 cric_ddmendpoints.json
[2024-02-11 19:34:14] -rw------- 1 boinc boinc   956385 Feb 11 19:18 agis_schedconf.cvmfs.json
[2024-02-11 19:34:14] drwx------ 4 boinc boinc     4096 Feb 11 19:19 pilot3
[2024-02-11 19:34:14] -rw------- 1 boinc boinc  1423889 Feb 11 19:27 output.1.9d2ffd86-4afb-4862-b785-e0fc4c11dbdc_8897.pool.root
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc      532 Feb 11 19:28 boinc_task_state.xml
[2024-02-11 19:34:14] -rw------- 1 boinc boinc     1001 Feb 11 19:28 memory_monitor_summary.json
[2024-02-11 19:34:14] -rw------- 1 boinc boinc   153191 Feb 11 19:30 9d2ffd86-4afb-4862-b785-e0fc4c11dbdc_8897.1.job.log.tgz
[2024-02-11 19:34:14] -rw------- 1 boinc boinc     8398 Feb 11 19:33 heartbeat.json
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc       25 Feb 11 19:34 wrapper_checkpoint.txt
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc     8192 Feb 11 19:34 boinc_mmap_file
[2024-02-11 19:34:14] -rw------- 1 boinc boinc     4167 Feb 11 19:34 pilotlog.txt
[2024-02-11 19:34:14] -rw------- 1 boinc boinc   141717 Feb 11 19:34 9d2ffd86-4afb-4862-b785-e0fc4c11dbdc_8897.1.job.log
[2024-02-11 19:34:14] -rw------- 1 boinc boinc      460 Feb 11 19:34 output.list
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc      744 Feb 11 19:34 runtime_log
[2024-02-11 19:34:14] -rw------- 1 boinc boinc  1740800 Feb 11 19:34 result.tar.gz
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc    12099 Feb 11 19:34 runtime_log.err
[2024-02-11 19:34:14] -rw------- 1 boinc boinc      631 Feb 11 19:34 PLZKDm25Yt4n7Olcko1bjSoqABFKDmABFKDmyeZQDmqjKKDmllLf0m.diag
[2024-02-11 19:34:14] -rw-r--r-- 1 boinc boinc    23386 Feb 11 19:34 stderr.txt
[2024-02-11 19:34:14] HITS file was successfully produced:
[2024-02-11 19:34:14] -rw------- 1 boinc boinc 1423889 Feb 11 19:27 shared/HITS.pool.root.1
[2024-02-11 19:34:14]  *** Contents of shared directory: ***
[2024-02-11 19:34:14] total 39768
[2024-02-11 19:34:14] -rw-r--r-- 2 boinc boinc    17614 Feb 11 19:16 start_atlas.sh
[2024-02-11 19:34:14] -rw-r--r-- 2 boinc boinc   453821 Feb 11 19:16 input.tar.gz
[2024-02-11 19:34:14] -rw-r--r-- 2 boinc boinc 37073557 Feb 11 19:16 ATLAS.root_0
[2024-02-11 19:34:14] -rw------- 1 boinc boinc  1423889 Feb 11 19:27 HITS.pool.root.1
[2024-02-11 19:34:14] -rw------- 1 boinc boinc  1740800 Feb 11 19:34 result.tar.gz
19:34:15 (3912266): run_atlas exited; CPU time 183.321565
19:34:15 (3912266): called boinc_finish(0)

</stderr_txt>
]]>

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