| Name | RmRMDmposy4n7Olcko1bjSoqABFKDmABFKDmyeZQDmdCLKDmwH9P9m_0 |
| Workunit | 2390111 |
| Created | 26 Feb 2024, 16:15:38 UTC |
| Sent | 26 Feb 2024, 16:25:32 UTC |
| Report deadline | 4 Mar 2024, 16:25:32 UTC |
| Received | 26 Feb 2024, 17:12:22 UTC |
| Server state | Over |
| Outcome | Validate error |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 4911 |
| Run time | 16 min 35 sec |
| CPU time | 9 min |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 32.01 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.51 GB |
| Peak swap size | 2.12 GB |
| Peak disk usage | 80.69 MB |
Stderr output
<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:52:59 (3973440): wrapper (7.7.26015): starting
11:52:59 (3973440): wrapper: running run_atlas (--nthreads 4)
[2024-02-26 11:52:59] Arguments: --nthreads 4
[2024-02-26 11:52:59] Threads: 4
[2024-02-26 11:52:59] Checking for CVMFS
[2024-02-26 11:53:03] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-26 11:53:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-26 11:53:05] Running cvmfs_config stat atlas.cern.ch
[2024-02-26 11:53:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-26 11:53:05] 2.9.2.0 3973646 0 24704 129860 3 1 3579292 4194305 0 130560 0 0 0.000 963 375 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-26 11:53:05] CVMFS is ok
[2024-02-26 11:53:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-26 11:53:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-02-26 11:53:05] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-26 11:53:05] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-26 11:53:05] Further information can be found at the LHC@home message board.
[2024-02-26 11:53:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-26 11:53:05] Checking for apptainer binary...
[2024-02-26 11:53:05] apptainer is not installed, using version from CVMFS
[2024-02-26 11:53:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-26 11:53:05] WC5950
[2024-02-26 11:53:05] apptainer works
[2024-02-26 11:53:05] Set ATHENA_PROC_NUMBER=4
[2024-02-26 11:53:05] Set ATHENA_CORE_NUMBER=4
[2024-02-26 11:53:05] Starting ATLAS job with PandaID=6127128486
[2024-02-26 11:53:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-26 12:09:31] *** The last 200 lines of the pilot log: ***
[2024-02-26 12:09:31] 2024-02-26 17:09:11,902 | DEBUG | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file: /var/lib/boinc-client/slots/12/heartbeat.json
[2024-02-26 12:09:31] 2024-02-26 17:09:11,902 | DEBUG | pilot.control.job | queue_monitor | job.completed=False
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | INFO | pilot.control.job | make_job_report |
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | WARNING | pilot.util.monitoring | job_monitor_tasks | process 3984981 is no longer using CPU - aborting
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | INFO | pilot.control.job | make_job_report | job summary report
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | DEBUG | pilot.control.job | job_monitor | job_monitor_tasks returned 0,
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | INFO | pilot.control.job | make_job_report | --------------------------------------------------
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | INFO | pilot.control.job | job_monitor | aborting job monitoring since job object (job id=6127128486) has expired
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | INFO | pilot.control.job | make_job_report | PanDA job id: 6127128486
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | INFO | pilot.control.job | make_job_report | task id: NULL
[2024-02-26 12:09:31] 2024-02-26 17:09:11,976 | INFO | pilot.control.job | make_job_report | errors: (none)
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | pilot state: finished
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | transexitcode: 0
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | exeerrorcode: 0
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | exeerrordiag:
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | exitcode: 0
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | exitmsg: OK
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | cpuconsumptiontime: 542 s
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | nevents: 2
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | neventsw: 0
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | pid: 3984981
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | pgrp: 3984981
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | corecount: 4
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | event service: False
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | sizes: {0: 2392850, 4: 2393056, 11: 2393084, 927: 2412846, 928: 2421956, 929: 2422012, 936: 2422362}
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report | --------------------------------------------------
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.control.job | make_job_report |
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | DEBUG | pilot.control.job | has_job_completed | ls -lF /var/lib/boinc-client/slots/12:
[2024-02-26 12:09:31]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,977 | INFO | pilot.util.container | print_executable | executing command: ls -lF /var/lib/boinc-client/slots/12
[2024-02-26 12:09:31] 2024-02-26 17:09:11,982 | DEBUG | pilot.util.container | execute | subprocess.communicate() will use timeout 864000 s
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | DEBUG | pilot.control.job | has_job_completed | total 43148
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 434589 Feb 26 12:09 4e8c0447-65e3-419a-9292-48350f335f04_15938.job.log
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 171516 Feb 26 12:09 4e8c0447-65e3-419a-9292-48350f335f04_15938.job.log.tgz
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 0 Feb 26 11:53 agis_ddmendpoints.agis.ALL.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 970369 Feb 26 11:53 agis_schedconf.cvmfs.json
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 0 Feb 26 11:52 boinc_lockfile
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 8192 Feb 26 12:09 boinc_mmap_file
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 532 Feb 26 12:08 boinc_task_state.xml
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 1324827 Feb 26 11:53 cric_ddmendpoints.json
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 37658468 Feb 26 11:52 EVNT.04972714._000029.pool.root.1
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 6658 Feb 26 12:09 heartbeat.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 2043680 Feb 26 12:08 Hits.hc_20286836.BOINC-TEST.4e8c0447-65e3-419a-9292-48350f335f04_15938.HITS.pool.root
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 9364 Feb 26 11:52 init_data.xml
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 502027 Feb 26 11:52 input.tar.gz
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 112 Feb 26 11:52 job.xml
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 998 Feb 26 12:08 memory_monitor_summary.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 508 Feb 26 12:09 output.list
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 2703 Feb 26 11:53 pandaJob.out
[2024-02-26 12:09:31] drwxrwx--- 2 boinc boinc 4096 Feb 26 12:09 PanDA_Pilot-6127128486/
[2024-02-26 12:09:31] drwx------ 5 boinc boinc 4096 Feb 26 11:53 pilot3/
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 489841 Feb 26 11:15 pilot3.tar.gz
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 95 Feb 26 12:08 pilot_heartbeat.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 405435 Feb 26 12:09 pilotlog.txt
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 4388 Feb 26 11:15 queuedata.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 129 Feb 26 11:53 RmRMDmposy4n7Olcko1bjSoqABFKDmABFKDmyeZQDmdCLKDmwH9P9m.diag
[2024-02-26 12:09:31] -rwxr-xr-x 1 boinc boinc 7986 Feb 26 11:52 run_atlas*
[2024-02-26 12:09:31] -rwx------ 1 boinc boinc 32498 Feb 26 11:15 runpilot2-wrapper.sh*
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 407 Feb 26 11:53 runtime_log
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 7853 Feb 26 11:53 runtime_log.err
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 424 Feb 26 11:53 setup.sh.local
[2024-02-26 12:09:31] drwxrwx--x 2 boinc boinc 4096 Feb 26 11:52 shared/
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 17638 Feb 26 11:52 start_atlas.sh
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 2251 Feb 26 11:53 stderr.txt
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 107 Feb 26 11:52 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 24 Feb 26 12:09 wrapper_checkpoint.txt
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | INFO | pilot.util.queuehandling | queue_report | queue jobs had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | INFO | pilot.util.queuehandling | queue_report | queue payloads had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | INFO | pilot.util.queuehandling | queue_report | queue data_in had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | INFO | pilot.util.queuehandling | queue_report | queue data_out had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | INFO | pilot.util.queuehandling | queue_report | queue current_data_in had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | INFO | pilot.util.queuehandling | queue_report | queue validated_jobs had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | INFO | pilot.util.queuehandling | queue_report | queue validated_payloads had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,992 | INFO | pilot.util.queuehandling | queue_report | queue monitored_payloads had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue finished_jobs had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue finished_payloads had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_in had 1 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_out had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue failed_jobs had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue failed_payloads had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_in had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_out had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobs had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.queuehandling | queue_report | queue messages had 0 job(s) [purged]
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.control.job | has_job_completed | job 6127128486 has completed (purged errors)
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | DEBUG | pilot.util.realtimelogger | cleanup | attempting real-time logger cleanup
[2024-02-26 12:09:31] 2024-02-26 17:09:11,993 | INFO | pilot.util.processes | cleanup | overall cleanup function is called
[2024-02-26 12:09:31] 2024-02-26 17:09:11,995 | DEBUG | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/12/PanDA_Pilot-6127128486
[2024-02-26 12:09:31] 2024-02-26 17:09:13,000 | INFO | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [3984981]
[2024-02-26 12:09:31] 2024-02-26 17:09:13,000 | INFO | pilot.info.jobdata | collect_zombies | zombie collector waiting for pid 3984981
[2024-02-26 12:09:31] 2024-02-26 17:09:13,000 | INFO | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-26 12:09:31] 2024-02-26 17:09:14,004 | INFO | pilot.util.processes | cleanup | collected zombie processes
[2024-02-26 12:09:31] 2024-02-26 17:09:14,004 | INFO | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=3984981
[2024-02-26 12:09:31] 2024-02-26 17:09:14,009 | DEBUG | pilot.util.container | execute | subprocess.communicate() will use timeout 864000 s
[2024-02-26 12:09:31] 2024-02-26 17:09:14,065 | INFO | pilot.util.processes | kill_processes | process IDs to be killed: [3984981] (in reverse order)
[2024-02-26 12:09:31] 2024-02-26 17:09:14,070 | DEBUG | pilot.util.container | execute | subprocess.communicate() will use timeout 864000 s
[2024-02-26 12:09:31] 2024-02-26 17:09:14,101 | WARNING | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
[2024-02-26 12:09:31] 2024-02-26 17:09:14,102 | INFO | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
[2024-02-26 12:09:31] 2024-02-26 17:09:14,105 | INFO | pilot.util.processes | kill_defunct_children | did not find any defunct processes belonging to 3984981
[2024-02-26 12:09:31] 2024-02-26 17:09:14,109 | INFO | pilot.util.processes | kill_defunct_children | did not find any defunct processes belonging to 3984981
[2024-02-26 12:09:31] 2024-02-26 17:09:14,109 | DEBUG | pilot.util.queuehandling | purge_queue | queue purged
[2024-02-26 12:09:31] 2024-02-26 17:09:14,109 | INFO | pilot.control.job | retrieve | ready for new job
[2024-02-26 12:09:31] 2024-02-26 17:09:14,109 | INFO | root | retrieve | pilot has finished with previous job - re-establishing logging
[2024-02-26 12:09:31] 2024-02-26 17:09:14,110 | INFO | pilot.util.auxiliary | pilot_version_banner | *************************************
[2024-02-26 12:09:31] 2024-02-26 17:09:14,110 | INFO | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 3.7.2.1 ***
[2024-02-26 12:09:31] 2024-02-26 17:09:14,110 | INFO | pilot.util.auxiliary | pilot_version_banner | *************************************
[2024-02-26 12:09:31] 2024-02-26 17:09:14,110 | INFO | pilot.util.auxiliary | pilot_version_banner |
[2024-02-26 12:09:31] 2024-02-26 17:09:14,129 | INFO | pilot.util.auxiliary | display_architecture_info | architecture information:
[2024-02-26 12:09:31] 2024-02-26 17:09:14,130 | INFO | pilot.util.container | print_executable | executing command: cat /etc/os-release
[2024-02-26 12:09:31] 2024-02-26 17:09:14,135 | DEBUG | pilot.util.container | execute | subprocess.communicate() will use timeout 864000 s
[2024-02-26 12:09:31] 2024-02-26 17:09:14,142 | INFO | pilot.util.filehandling | dump | cat /etc/os-release:
[2024-02-26 12:09:31] NAME="CentOS Linux"
[2024-02-26 12:09:31] VERSION="7 (Core)"
[2024-02-26 12:09:31] ID="centos"
[2024-02-26 12:09:31] ID_LIKE="rhel fedora"
[2024-02-26 12:09:31] VERSION_ID="7"
[2024-02-26 12:09:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-26 12:09:31] ANSI_COLOR="0;31"
[2024-02-26 12:09:31] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-26 12:09:31] HOME_URL="https://www.centos.org/"
[2024-02-26 12:09:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-26 12:09:31]
[2024-02-26 12:09:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-26 12:09:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-26 12:09:31] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-26 12:09:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-26 12:09:31]
[2024-02-26 12:09:31] 2024-02-26 17:09:14,142 | INFO | pilot.util.auxiliary | pilot_version_banner | *************************************
[2024-02-26 12:09:31] 2024-02-26 17:09:14,644 | DEBUG | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/12
[2024-02-26 12:09:31] 2024-02-26 17:09:14,644 | INFO | pilot.util.container | print_executable | executing command: df -mP /var/lib/boinc-client/slots/12
[2024-02-26 12:09:31] 2024-02-26 17:09:14,650 | DEBUG | pilot.util.container | execute | subprocess.communicate() will use timeout 864000 s
[2024-02-26 12:09:31] 2024-02-26 17:09:14,658 | DEBUG | pilot.util.workernode | get_local_disk_space | stdout=Filesystem 1048576-blocks Used Available Capacity Mounted on
[2024-02-26 12:09:31] /dev/nvme0n1p2 467851 83089 360926 19% /var/lib/boinc-client/slots/12
[2024-02-26 12:09:31] 2024-02-26 17:09:14,658 | DEBUG | pilot.util.workernode | get_local_disk_space | stderr=
[2024-02-26 12:09:31] 2024-02-26 17:09:14,658 | INFO | pilot.util.monitoring | check_local_space | sufficient remaining disk space (378458341376 B)
[2024-02-26 12:09:31] 2024-02-26 17:09:14,658 | WARNING | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-26 12:09:31] 2024-02-26 17:09:14,658 | WARNING | pilot.control.job | retrieve | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-26 12:09:31] 2024-02-26 17:09:14,658 | WARNING | pilot.control.monitor | control | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-02-26 12:09:31] 2024-02-26 17:09:14,658 | WARNING | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-26 12:09:31] 2024-02-26 17:09:14,658 | INFO | pilot.util.queuehandling | abort_jobs_in_queues | found 0 job(s) in 20 queues
[2024-02-26 12:09:31] 2024-02-26 17:09:14,659 | WARNING | pilot.control.monitor | run_checks | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-26 12:09:31] 2024-02-26 17:09:14,659 | WARNING | pilot.control.monitor | run_checks | will wait for a maximum of 300 s for threads to finish
[2024-02-26 12:09:31] 2024-02-26 17:09:14,728 | INFO | pilot.control.payload | control | all payload control threads have been joined
[2024-02-26 12:09:31] 2024-02-26 17:09:14,728 | DEBUG | pilot.control.payload | control | payload control ending since graceful_stop has been set
[2024-02-26 12:09:31] 2024-02-26 17:09:14,872 | INFO | pilot.control.data | control | all data control threads have been joined
[2024-02-26 12:09:31] 2024-02-26 17:09:14,872 | DEBUG | pilot.control.data | control | data control ending since graceful_stop has been set
[2024-02-26 12:09:31] 2024-02-26 17:09:14,978 | WARNING | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-26 12:09:31] 2024-02-26 17:09:15,484 | WARNING | pilot.util.common | should_abort | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-26 12:09:31] 2024-02-26 17:09:15,484 | INFO | pilot.control.job | job_monitor | aborting loop
[2024-02-26 12:09:31] 2024-02-26 17:09:15,660 | INFO | pilot.control.job | retrieve | [job] retrieve thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:15,732 | INFO | pilot.control.payload | control | [payload] control thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:15,876 | INFO | pilot.control.data | control | [data] control thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,224 | INFO | pilot.control.payload | validate_post | [payload] validate_post thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,318 | INFO | pilot.control.job | control | all job control threads have been joined
[2024-02-26 12:09:31] 2024-02-26 17:09:16,319 | DEBUG | pilot.control.job | control | job control ending since graceful_stop has been set
[2024-02-26 12:09:31] 2024-02-26 17:09:16,488 | INFO | pilot.control.job | job_monitor | [job] job monitor thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,508 | INFO | pilot.control.job | validate | [job] validate thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,652 | INFO | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,660 | INFO | pilot.control.data | copytool_out | [data] copytool_out thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,784 | INFO | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,828 | INFO | pilot.control.payload | failed_post | [payload] failed_post thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,852 | INFO | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,980 | INFO | pilot.control.data | copytool_in | [data] copytool_in thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:16,984 | WARNING | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-26 12:09:31] 2024-02-26 17:09:17,320 | INFO | pilot.control.job | control | [job] control thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:17,988 | INFO | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:18,984 | INFO | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:25,440 | INFO | pilot.control.payload | get_logging_info | job.realtimelogging is not enabled
[2024-02-26 12:09:31] 2024-02-26 17:09:25,440 | DEBUG | pilot.control.payload | run_realtimelog | real-time logging not needed at this point
[2024-02-26 12:09:31] 2024-02-26 17:09:25,440 | DEBUG | pilot.control.payload | run_realtimelog | realtime logger was not found, waiting ..
[2024-02-26 12:09:31] 2024-02-26 17:09:26,444 | INFO | pilot.control.payload | run_realtimelog | [payload] run_realtimelog thread has finished
[2024-02-26 12:09:31] 2024-02-26 17:09:26,604 | INFO | pilot.util.processes | threads_aborted | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472
[2024-02-26 12:09:31] 2024-02-26 17:09:26,604 | DEBUG | pilot.workflow.generic | run | will proceed to set job_aborted
[2024-02-26 12:09:31] 2024-02-26 17:09:26,704 | WARNING | pilot.control.monitor | run_checks | job_aborted has been set - aborting pilot monitoring
[2024-02-26 12:09:31] 2024-02-26 17:09:26,704 | INFO | pilot.control.monitor | control | [monitor] control thread has ended
[2024-02-26 12:09:31] 2024-02-26 17:09:31,628 | DEBUG | pilot.workflow.generic | run | all relevant threads have aborted (thread count=1)
[2024-02-26 12:09:31] 2024-02-26 17:09:31,628 | INFO | pilot.workflow.generic | run | all workflow threads have been joined
[2024-02-26 12:09:31] 2024-02-26 17:09:31,628 | INFO | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
[2024-02-26 12:09:31] 2024-02-26 17:09:31,668 | DEBUG | pilot.util.processgroups | get_all_child_pids | python3(3977748)---pstree(3995061)
[2024-02-26 12:09:31]
[2024-02-26 12:09:31] 2024-02-26 17:09:31,669 | INFO | pilot.util.processgroups | find_defunct_subprocesses | child pids=[3977748, 3995061]
[2024-02-26 12:09:31] 2024-02-26 17:09:31,694 | DEBUG | pilot.util.processgroups | is_defunct | 3977748: return code=0, stdout=SN
[2024-02-26 12:09:31] , stderr=
[2024-02-26 12:09:31] 2024-02-26 17:09:31,720 | DEBUG | pilot.util.processgroups | is_defunct | 3995061: return code=1, stdout=, stderr=
[2024-02-26 12:09:31] 2024-02-26 17:09:31,720 | INFO | root | list_zombies | no defunct processes were found
[2024-02-26 12:09:31] 2024-02-26 17:09:31,720 | INFO | root | get_proper_exit_code | traces error code: 0
[2024-02-26 12:09:31] 2024-02-26 17:09:31,720 | INFO | root | wrap_up | pilot has finished (exit code=0, shell exit code=0)
[2024-02-26 12:09:31] 2024-02-26 17:09:31,761 [wrapper] ==== pilot stdout END ====
[2024-02-26 12:09:31] 2024-02-26 17:09:31,764 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-26 12:09:31] 2024-02-26 17:09:31,767 [wrapper] pilotpid: 3977748
[2024-02-26 12:09:31] 2024-02-26 17:09:31,770 [wrapper] Pilot exit status: 0
[2024-02-26 12:09:31] 2024-02-26 17:09:31,787 [wrapper] pandaids: 6127128486
[2024-02-26 12:09:31] 2024-02-26 17:09:31,812 [wrapper] cleanup: SIGTERM to supervisor_pilot 3992625 3977749
[2024-02-26 12:09:31] 2024-02-26 17:09:31,815 [wrapper] Test setup, not cleaning
[2024-02-26 12:09:31] 2024-02-26 17:09:31,818 [wrapper] ==== wrapper stdout END ====
[2024-02-26 12:09:31] 2024-02-26 17:09:31,821 [wrapper] ==== wrapper stderr END ====
[2024-02-26 12:09:31] 2024-02-26 17:09:31,827 [wrapper] apfmon messages muted
[2024-02-26 12:09:31] *** Error codes and diagnostics ***
[2024-02-26 12:09:31] "exeErrorCode": 0,
[2024-02-26 12:09:31] "exeErrorDiag": "",
[2024-02-26 12:09:31] "pilotErrorCode": 0,
[2024-02-26 12:09:31] "pilotErrorDiag": "",
[2024-02-26 12:09:31] *** Listing of results directory ***
[2024-02-26 12:09:31] total 43440
[2024-02-26 12:09:31] -rwx------ 1 boinc boinc 32498 Feb 26 11:15 runpilot2-wrapper.sh
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 4388 Feb 26 11:15 queuedata.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 489841 Feb 26 11:15 pilot3.tar.gz
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 107 Feb 26 11:52 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-26 12:09:31] -rwxr-xr-x 1 boinc boinc 7986 Feb 26 11:52 run_atlas
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 112 Feb 26 11:52 job.xml
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 17638 Feb 26 11:52 start_atlas.sh
[2024-02-26 12:09:31] drwxrwx--x 2 boinc boinc 4096 Feb 26 11:52 shared
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 502027 Feb 26 11:52 input.tar.gz
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 9364 Feb 26 11:52 init_data.xml
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 37658468 Feb 26 11:52 EVNT.04972714._000029.pool.root.1
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 0 Feb 26 11:52 boinc_lockfile
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 2703 Feb 26 11:53 pandaJob.out
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 424 Feb 26 11:53 setup.sh.local
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 970369 Feb 26 11:53 agis_schedconf.cvmfs.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 0 Feb 26 11:53 agis_ddmendpoints.agis.ALL.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 1324827 Feb 26 11:53 cric_ddmendpoints.json
[2024-02-26 12:09:31] drwx------ 5 boinc boinc 4096 Feb 26 11:53 pilot3
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 95 Feb 26 12:08 pilot_heartbeat.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 2043680 Feb 26 12:08 Hits.hc_20286836.BOINC-TEST.4e8c0447-65e3-419a-9292-48350f335f04_15938.HITS.pool.root
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 532 Feb 26 12:08 boinc_task_state.xml
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 998 Feb 26 12:08 memory_monitor_summary.json
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 171516 Feb 26 12:09 4e8c0447-65e3-419a-9292-48350f335f04_15938.job.log.tgz
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 6658 Feb 26 12:09 heartbeat.json
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 24 Feb 26 12:09 wrapper_checkpoint.txt
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 8192 Feb 26 12:09 boinc_mmap_file
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 9975 Feb 26 12:09 pilotlog.txt
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 453310 Feb 26 12:09 4e8c0447-65e3-419a-9292-48350f335f04_15938.job.log
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 510 Feb 26 12:09 output.list
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 680 Feb 26 12:09 runtime_log
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 645120 Feb 26 12:09 result.tar.gz
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 11781 Feb 26 12:09 runtime_log.err
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 624 Feb 26 12:09 RmRMDmposy4n7Olcko1bjSoqABFKDmABFKDmyeZQDmdCLKDmwH9P9m.diag
[2024-02-26 12:09:31] -rw-r--r-- 1 boinc boinc 29688 Feb 26 12:09 stderr.txt
[2024-02-26 12:09:31] HITS file was successfully produced:
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 2043680 Feb 26 12:08 shared/HITS.pool.root.1
[2024-02-26 12:09:31] *** Contents of shared directory: ***
[2024-02-26 12:09:31] total 39920
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 17638 Feb 26 11:52 start_atlas.sh
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 502027 Feb 26 11:52 input.tar.gz
[2024-02-26 12:09:31] -rw-r--r-- 2 boinc boinc 37658468 Feb 26 11:52 ATLAS.root_0
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 2043680 Feb 26 12:08 HITS.pool.root.1
[2024-02-26 12:09:31] -rw------- 1 boinc boinc 645120 Feb 26 12:09 result.tar.gz
12:09:33 (3973440): run_atlas exited; CPU time 540.395404
12:09:33 (3973440): called boinc_finish(0)
</stderr_txt>
]]>
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