Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
01:40:37 (499896): wrapper (7.7.26015): starting
01:40:37 (499896): wrapper: running run_atlas (--nthreads 4)
[2024-02-27 01:40:37] Arguments: --nthreads 4
[2024-02-27 01:40:37] Threads: 4
[2024-02-27 01:40:37] Checking for CVMFS
[2024-02-27 01:40:37] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-27 01:40:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-27 01:40:37] Running cvmfs_config stat atlas.cern.ch
[2024-02-27 01:40:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-27 01:40:37] 2.11.1.0 81175 54902 90724 129880 1 75 4056128 4194304 336 130560 1 16146964 99.306 18087085 1600 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-27 01:40:37] CVMFS is ok
[2024-02-27 01:40:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-27 01:40:37] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-27 01:40:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-27 01:40:37] Further information can be found at the LHC@home message board.
[2024-02-27 01:40:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-27 01:40:37] Checking for apptainer binary...
[2024-02-27 01:40:37] apptainer is not installed, using version from CVMFS
[2024-02-27 01:40:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-27 01:40:37] 3070Ti
[2024-02-27 01:40:37] apptainer works
[2024-02-27 01:40:37] Set ATHENA_PROC_NUMBER=4
[2024-02-27 01:40:37] Set ATHENA_CORE_NUMBER=4
[2024-02-27 01:40:37] Starting ATLAS job with PandaID=6127876140
[2024-02-27 01:40:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-27 01:53:39]  *** The last 200 lines of the pilot log: ***
[2024-02-27 01:53:39]  allow_lan=True
[2024-02-27 01:53:39]  allow_wan=False
[2024-02-27 01:53:39]  checkinputsize=True
[2024-02-27 01:53:39]  checksum={'adler32': 'd64ecf88'}
[2024-02-27 01:53:39]  dataset=hc_test.gangarbt.hc20286841.tid1184.BOINC-TEST.23
[2024-02-27 01:53:39]  ddm_activity=['write_lan', 'write_wan']
[2024-02-27 01:53:39]  ddmendpoint=NDGF-T1_DATADISK
[2024-02-27 01:53:39]  direct_access_lan=False
[2024-02-27 01:53:39]  direct_access_wan=False
[2024-02-27 01:53:39]  domain=
[2024-02-27 01:53:39]  filesize=153491
[2024-02-27 01:53:39]  filetype=log
[2024-02-27 01:53:39]  guid=6156c6f9-1a89-4db9-b87d-214464a7caba
[2024-02-27 01:53:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-02-27 01:53:39]  is_tar=False
[2024-02-27 01:53:39]  lfn=dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log.tgz
[2024-02-27 01:53:39]  mtime=0
[2024-02-27 01:53:39]  protocol_id=None
[2024-02-27 01:53:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-02-27 01:53:39]  replicas=None
[2024-02-27 01:53:39]  scope=hc_test
[2024-02-27 01:53:39]  status=None
[2024-02-27 01:53:39]  status_code=0
[2024-02-27 01:53:39]  storage_token=
[2024-02-27 01:53:39]  surl=/var/lib/boinc-client/slots/5/PanDA_Pilot-6127876140/dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log.tgz
[2024-02-27 01:53:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/38/12/dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log.tgz
[2024-02-27 01:53:39]  workdir=None
[2024-02-27 01:53:39] ]
[2024-02-27 01:53:39] 2024-02-27 06:53:12,568 | INFO     | transferring file dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log.tgz from /var/lib/boinc-client/slots/5/PanDA_Pilot-6127876140/dd0cd34a-ab27-4701-9f4d-36f724
[2024-02-27 01:53:39] 2024-02-27 06:53:12,568 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/5/PanDA_Pilot-6127876140/dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log.tgz /var/lib/boinc-cli
[2024-02-27 01:53:39] 2024-02-27 06:53:12,584 | INFO     | adding to output.list: dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/38/12/dd0cd34a-ab27-
[2024-02-27 01:53:39] 2024-02-27 06:53:12,584 | INFO     | summary of transferred files:
[2024-02-27 01:53:39] 2024-02-27 06:53:12,584 | INFO     |  -- lfn=dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log.tgz, status_code=0, status=transferred
[2024-02-27 01:53:39] 2024-02-27 06:53:12,584 | INFO     | stage-out finished correctly
[2024-02-27 01:53:39] 2024-02-27 06:53:12,760 | INFO     | monitor loop #65: job 0:6127876140 is in state 'finished'
[2024-02-27 01:53:39] 2024-02-27 06:53:12,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-27 01:53:39] 2024-02-27 06:53:14,792 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-27 01:53:39] 2024-02-27 06:53:15,261 | INFO     | monitor loop #66: job 0:6127876140 is in state 'finished'
[2024-02-27 01:53:39] 2024-02-27 06:53:15,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-27 01:53:39] 2024-02-27 06:53:16,653 | INFO     | job 6127876140 has state=finished
[2024-02-27 01:53:39] 2024-02-27 06:53:16,654 | INFO     | preparing for final server update for job 6127876140 in state='finished'
[2024-02-27 01:53:39] 2024-02-27 06:53:16,654 | INFO     | this job has now completed (state=finished)
[2024-02-27 01:53:39] 2024-02-27 06:53:16,654 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-27 01:53:39] 2024-02-27 06:53:16,654 | INFO     | job 6127876140 has finished - writing final server update
[2024-02-27 01:53:39] 2024-02-27 06:53:16,654 | INFO     | total number of processed events: 2 (read)
[2024-02-27 01:53:39] 2024-02-27 06:53:16,658 | INFO     | executing command: lscpu
[2024-02-27 01:53:39] 2024-02-27 06:53:16,686 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-27 01:53:39] 2024-02-27 06:53:16,686 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-27 01:53:39] 2024-02-27 06:53:16,716 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-27 01:53:39] 2024-02-27 06:53:17,764 | INFO     | monitor loop #67: job 0:6127876140 is in state 'finished'
[2024-02-27 01:53:39] 2024-02-27 06:53:17,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-27 01:53:39] 2024-02-27 06:53:20,265 | INFO     | monitor loop #68: job 0:6127876140 is in state 'finished'
[2024-02-27 01:53:39] 2024-02-27 06:53:20,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-27 01:53:39] 2024-02-27 06:53:22,768 | INFO     | monitor loop #69: job 0:6127876140 is in state 'finished'
[2024-02-27 01:53:39] 2024-02-27 06:53:22,769 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-27 01:53:39] 2024-02-27 06:53:24,203 | INFO     | CPU arch script returned: x86-64-v3
[2024-02-27 01:53:39] 2024-02-27 06:53:24,203 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6127876140/memory_monitor_summary.json (trf name=prmon)
[2024-02-27 01:53:39] 2024-02-27 06:53:24,204 | INFO     | extracted standard info from prmon json
[2024-02-27 01:53:39] 2024-02-27 06:53:24,204 | INFO     | extracted standard memory fields from prmon json
[2024-02-27 01:53:39] 2024-02-27 06:53:24,205 | WARNING  | wrong length of table data, x=[1709016375.0, 1709016436.0, 1709016497.0, 1709016558.0, 1709016619.0], y=[994500.0, 1087604.0, 1218140.0, 1394252.0, 1709084.0] (mus
[2024-02-27 01:53:39] 2024-02-27 06:53:24,205 | INFO     | ..............................
[2024-02-27 01:53:39] 2024-02-27 06:53:24,205 | INFO     | . Timing measurements:
[2024-02-27 01:53:39] 2024-02-27 06:53:24,205 | INFO     | . get job = 0 s
[2024-02-27 01:53:39] 2024-02-27 06:53:24,205 | INFO     | . initial setup = 2 s
[2024-02-27 01:53:39] 2024-02-27 06:53:24,205 | INFO     | . payload setup = 7 s
[2024-02-27 01:53:39] 2024-02-27 06:53:24,205 | INFO     | . stage-in = 0 s
[2024-02-27 01:53:39] 2024-02-27 06:53:24,205 | INFO     | . payload execution = 722 s
[2024-02-27 01:53:39] 2024-02-27 06:53:24,206 | INFO     | . stage-out = 0 s
[2024-02-27 01:53:39] 2024-02-27 06:53:24,206 | INFO     | . log creation = 0 s
[2024-02-27 01:53:39] 2024-02-27 06:53:24,206 | INFO     | ..............................
[2024-02-27 01:53:39] 2024-02-27 06:53:24,264 | INFO     | 
[2024-02-27 01:53:39] 2024-02-27 06:53:24,265 | INFO     | job summary report
[2024-02-27 01:53:39] 2024-02-27 06:53:24,265 | INFO     | --------------------------------------------------
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | PanDA job id: 6127876140
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | task id: NULL
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | errors: (none)
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | pilot state: finished 
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | transexitcode: 0
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | exeerrorcode: 0
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | exeerrordiag: 
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | exitcode: 0
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | exitmsg: OK
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | cpuconsumptiontime: 340 s
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | nevents: 2
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | neventsw: 0
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | pid: 510876
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | pgrp: 510876
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | corecount: 4
[2024-02-27 01:53:39] 2024-02-27 06:53:24,266 | INFO     | event service: False
[2024-02-27 01:53:39] 2024-02-27 06:53:24,267 | INFO     | sizes: {0: 2385923, 1: 2385923, 3: 2386157, 11: 2386185, 733: 2416257, 735: 2416257, 745: 2416607}
[2024-02-27 01:53:39] 2024-02-27 06:53:24,267 | INFO     | --------------------------------------------------
[2024-02-27 01:53:39] 2024-02-27 06:53:24,267 | INFO     | 
[2024-02-27 01:53:39] 2024-02-27 06:53:24,267 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2024-02-27 01:53:39] 2024-02-27 06:53:24,282 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,282 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,282 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,282 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | job 6127876140 has completed (purged errors)
[2024-02-27 01:53:39] 2024-02-27 06:53:24,283 | INFO     | overall cleanup function is called
[2024-02-27 01:53:39] 2024-02-27 06:53:25,289 | INFO     | --- collectZombieJob: --- 10, [510876]
[2024-02-27 01:53:39] 2024-02-27 06:53:25,290 | INFO     | zombie collector waiting for pid 510876
[2024-02-27 01:53:39] 2024-02-27 06:53:25,290 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-27 01:53:39] 2024-02-27 06:53:26,293 | INFO     | collected zombie processes
[2024-02-27 01:53:39] 2024-02-27 06:53:26,294 | INFO     | will now attempt to kill all subprocesses of pid=510876
[2024-02-27 01:53:39] 2024-02-27 06:53:26,366 | INFO     | process IDs to be killed: [510876] (in reverse order)
[2024-02-27 01:53:39] 2024-02-27 06:53:26,417 | WARNING  | found no corresponding commands to process id(s)
[2024-02-27 01:53:39] 2024-02-27 06:53:26,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-27 01:53:39] 2024-02-27 06:53:26,420 | INFO     | did not find any defunct processes belonging to 510876
[2024-02-27 01:53:39] 2024-02-27 06:53:26,423 | INFO     | did not find any defunct processes belonging to 510876
[2024-02-27 01:53:39] 2024-02-27 06:53:26,423 | INFO     | ready for new job
[2024-02-27 01:53:39] 2024-02-27 06:53:26,423 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-27 01:53:39] 2024-02-27 06:53:26,424 | INFO     | **************************************
[2024-02-27 01:53:39] 2024-02-27 06:53:26,424 | INFO     | ***  PanDA Pilot version 3.7.1.50  ***
[2024-02-27 01:53:39] 2024-02-27 06:53:26,424 | INFO     | **************************************
[2024-02-27 01:53:39] 2024-02-27 06:53:26,424 | INFO     | 
[2024-02-27 01:53:39] 2024-02-27 06:53:26,425 | INFO     | architecture information:
[2024-02-27 01:53:39] 2024-02-27 06:53:26,426 | INFO     | executing command: cat /etc/os-release
[2024-02-27 01:53:39] 2024-02-27 06:53:26,439 | INFO     | cat /etc/os-release:
[2024-02-27 01:53:39] NAME="CentOS Linux"
[2024-02-27 01:53:39] VERSION="7 (Core)"
[2024-02-27 01:53:39] ID="centos"
[2024-02-27 01:53:39] ID_LIKE="rhel fedora"
[2024-02-27 01:53:39] VERSION_ID="7"
[2024-02-27 01:53:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-27 01:53:39] ANSI_COLOR="0;31"
[2024-02-27 01:53:39] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-27 01:53:39] HOME_URL="https://www.centos.org/"
[2024-02-27 01:53:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-27 01:53:39] 
[2024-02-27 01:53:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-27 01:53:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-27 01:53:39] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-27 01:53:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-27 01:53:39] 
[2024-02-27 01:53:39] 2024-02-27 06:53:26,439 | INFO     | **************************************
[2024-02-27 01:53:39] 2024-02-27 06:53:26,942 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2024-02-27 01:53:39] 2024-02-27 06:53:26,957 | INFO     | sufficient remaining disk space (1807429402624 B)
[2024-02-27 01:53:39] 2024-02-27 06:53:26,957 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-27 01:53:39] 2024-02-27 06:53:26,957 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-27 01:53:39] 2024-02-27 06:53:26,957 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-27 01:53:39] 2024-02-27 06:53:26,957 | INFO     | aborting loop
[2024-02-27 01:53:39] 2024-02-27 06:53:27,397 | INFO     | found 0 job(s) in 20 queues
[2024-02-27 01:53:39] 2024-02-27 06:53:27,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-27 01:53:39] 2024-02-27 06:53:27,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-27 01:53:39] 2024-02-27 06:53:27,484 | INFO     | all job control threads have been joined
[2024-02-27 01:53:39] 2024-02-27 06:53:27,637 | INFO     | all payload control threads have been joined
[2024-02-27 01:53:39] 2024-02-27 06:53:27,810 | INFO     | all data control threads have been joined
[2024-02-27 01:53:39] 2024-02-27 06:53:27,962 | INFO     | [job] job monitor thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:27,962 | INFO     | [job] retrieve thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-27 01:53:39] 2024-02-27 06:53:28,177 | INFO     | [job] validate thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,229 | INFO     | [payload] execute_payloads thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,357 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,358 | INFO     | [job] create_data_payload thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,489 | INFO     | [job] control thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,513 | INFO     | [payload] validate_pre thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,517 | INFO     | [data] copytool_in thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,574 | INFO     | [payload] failed_post thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,641 | INFO     | [payload] control thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:28,813 | INFO     | [data] control thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:29,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-27 01:53:39] 2024-02-27 06:53:29,281 | INFO     | [payload] validate_post thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:29,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-27 01:53:39] 2024-02-27 06:53:30,169 | INFO     | [data] copytool_out thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:30,273 | INFO     | [job] queue monitor thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:33,865 | INFO     | [data] queue_monitor thread has finished
[2024-02-27 01:53:39] 2024-02-27 06:53:33,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140647150548800)>', '<ExcThread(monitor, started 140646396446464)>']
[2024-02-27 01:53:39] 2024-02-27 06:53:34,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-27 01:53:39] 2024-02-27 06:53:34,426 | INFO     | [monitor] control thread has ended
[2024-02-27 01:53:39] 2024-02-27 06:53:38,921 | INFO     | all workflow threads have been joined
[2024-02-27 01:53:39] 2024-02-27 06:53:38,922 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-27 01:53:39] 2024-02-27 06:53:38,922 | INFO     | traces error code: 0
[2024-02-27 01:53:39] 2024-02-27 06:53:38,922 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-27 01:53:39] 2024-02-27 06:53:39,000 [wrapper] ==== pilot stdout END ====
[2024-02-27 01:53:39] 2024-02-27 06:53:39,005 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-27 01:53:39] 2024-02-27 06:53:39,007 [wrapper] pilotpid: 503646
[2024-02-27 01:53:39] 2024-02-27 06:53:39,009 [wrapper] Pilot exit status: 0
[2024-02-27 01:53:39] 2024-02-27 06:53:39,017 [wrapper] pandaids: 6127876140
[2024-02-27 01:53:39] 2024-02-27 06:53:39,049 [wrapper] cleanup: SIGTERM to supervisor_pilot  503651 503647
[2024-02-27 01:53:39] 2024-02-27 06:53:39,051 [wrapper] Test setup, not cleaning
[2024-02-27 01:53:39] 2024-02-27 06:53:39,053 [wrapper] ==== wrapper stdout END ====
[2024-02-27 01:53:39] 2024-02-27 06:53:39,055 [wrapper] ==== wrapper stderr END ====
[2024-02-27 01:53:39] 2024-02-27 06:53:39,059 [wrapper] apfmon messages muted
[2024-02-27 01:53:39]  *** Error codes and diagnostics ***
[2024-02-27 01:53:39]     "exeErrorCode": 0,
[2024-02-27 01:53:39]     "exeErrorDiag": "",
[2024-02-27 01:53:39]     "pilotErrorCode": 0,
[2024-02-27 01:53:39]     "pilotErrorDiag": "",
[2024-02-27 01:53:39]  *** Listing of results directory ***
[2024-02-27 01:53:39] total 43092
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc   460308 Feb 26 23:22 pilot3.tar.gz
[2024-02-27 01:53:39] -rwx------ 1 boinc boinc    32500 Feb 26 23:47 runpilot2-wrapper.sh
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc     4388 Feb 26 23:47 queuedata.json
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc      107 Feb 27 01:40 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-27 01:53:39] -rwxr-xr-x 1 boinc boinc     7986 Feb 27 01:40 run_atlas
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc      112 Feb 27 01:40 job.xml
[2024-02-27 01:53:39] -rw-r--r-- 2 boinc boinc    17618 Feb 27 01:40 start_atlas.sh
[2024-02-27 01:53:39] drwxrwx--x 2 boinc boinc     4096 Feb 27 01:40 shared
[2024-02-27 01:53:39] -rw-r--r-- 2 boinc boinc   472027 Feb 27 01:40 input.tar.gz
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc     9521 Feb 27 01:40 init_data.xml
[2024-02-27 01:53:39] -rw-r--r-- 2 boinc boinc 36949600 Feb 27 01:40 EVNT.04972714._000039.pool.root.1
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc        0 Feb 27 01:40 boinc_lockfile
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc     2752 Feb 27 01:40 pandaJob.out
[2024-02-27 01:53:39] -rw------- 1 boinc boinc      424 Feb 27 01:40 setup.sh.local
[2024-02-27 01:53:39] -rw------- 1 boinc boinc   969759 Feb 27 01:40 agis_schedconf.cvmfs.json
[2024-02-27 01:53:39] -rw------- 1 boinc boinc        0 Feb 27 01:40 agis_ddmendpoints.agis.ALL.json
[2024-02-27 01:53:39] -rw------- 1 boinc boinc  1320368 Feb 27 01:40 cric_ddmendpoints.json
[2024-02-27 01:53:39] drwx------ 4 boinc boinc     4096 Feb 27 01:40 pilot3
[2024-02-27 01:53:39] -rw------- 1 boinc boinc       95 Feb 27 01:52 pilot_heartbeat.json
[2024-02-27 01:53:39] -rw------- 1 boinc boinc  1577686 Feb 27 01:53 output.1.dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.pool.root
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc      532 Feb 27 01:53 boinc_task_state.xml
[2024-02-27 01:53:39] -rw------- 1 boinc boinc     1001 Feb 27 01:53 memory_monitor_summary.json
[2024-02-27 01:53:39] -rw------- 1 boinc boinc   153491 Feb 27 01:53 dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log.tgz
[2024-02-27 01:53:39] -rw------- 1 boinc boinc     7317 Feb 27 01:53 heartbeat.json
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc     8192 Feb 27 01:53 boinc_mmap_file
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc       24 Feb 27 01:53 wrapper_checkpoint.txt
[2024-02-27 01:53:39] -rw------- 1 boinc boinc     4224 Feb 27 01:53 pilotlog.txt
[2024-02-27 01:53:39] -rw------- 1 boinc boinc   123963 Feb 27 01:53 dd0cd34a-ab27-4701-9f4d-36f724b2dafb_77441.1.job.log
[2024-02-27 01:53:39] -rw------- 1 boinc boinc      464 Feb 27 01:53 output.list
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc      748 Feb 27 01:53 runtime_log
[2024-02-27 01:53:39] -rw------- 1 boinc boinc  1873920 Feb 27 01:53 result.tar.gz
[2024-02-27 01:53:39] -rw------- 1 boinc boinc      618 Feb 27 01:53 WR7KDm9X4y4n7Olcko1bjSoqABFKDmABFKDmyeZQDmjDLKDmerGuZn.diag
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc    12080 Feb 27 01:53 runtime_log.err
[2024-02-27 01:53:39] -rw-r--r-- 1 boinc boinc    21171 Feb 27 01:53 stderr.txt
[2024-02-27 01:53:39] HITS file was successfully produced:
[2024-02-27 01:53:39] -rw------- 1 boinc boinc 1577686 Feb 27 01:53 shared/HITS.pool.root.1
[2024-02-27 01:53:39]  *** Contents of shared directory: ***
[2024-02-27 01:53:39] total 39948
[2024-02-27 01:53:39] -rw-r--r-- 2 boinc boinc    17618 Feb 27 01:40 start_atlas.sh
[2024-02-27 01:53:39] -rw-r--r-- 2 boinc boinc   472027 Feb 27 01:40 input.tar.gz
[2024-02-27 01:53:39] -rw-r--r-- 2 boinc boinc 36949600 Feb 27 01:40 ATLAS.root_0
[2024-02-27 01:53:39] -rw------- 1 boinc boinc  1577686 Feb 27 01:53 HITS.pool.root.1
[2024-02-27 01:53:39] -rw------- 1 boinc boinc  1873920 Feb 27 01:53 result.tar.gz
01:53:41 (499896): run_atlas exited; CPU time 331.717172
01:53:41 (499896): called boinc_finish(0)

</stderr_txt>
]]>

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