Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
03:59:50 (24137): wrapper (7.7.26015): starting
03:59:50 (24137): wrapper: running run_atlas (--nthreads 4)
[2024-02-27 03:59:50] Arguments: --nthreads 4
[2024-02-27 03:59:50] Threads: 4
[2024-02-27 03:59:50] Checking for CVMFS
[2024-02-27 03:59:51] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-27 03:59:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-27 03:59:51] Running cvmfs_config stat atlas.cern.ch
[2024-02-27 03:59:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-27 03:59:51] 2.9.2.0 2779 12 38628 129883 3 75 3861212 4194305 0 130560 0 61297 99.997 1033 560 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-27 03:59:51] CVMFS is ok
[2024-02-27 03:59:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-27 03:59:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-02-27 03:59:51] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-27 03:59:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-27 03:59:51] Further information can be found at the LHC@home message board.
[2024-02-27 03:59:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-27 03:59:51] Checking for apptainer binary...
[2024-02-27 03:59:51] apptainer is not installed, using version from CVMFS
[2024-02-27 03:59:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-27 03:59:51] WC5950
[2024-02-27 03:59:51] apptainer works
[2024-02-27 03:59:51] Set ATHENA_PROC_NUMBER=4
[2024-02-27 03:59:51] Set ATHENA_CORE_NUMBER=4
[2024-02-27 03:59:51] Starting ATLAS job with PandaID=6127926243
[2024-02-27 03:59:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-27 04:09:49]  *** The last 200 lines of the pilot log: ***
[2024-02-27 04:09:49]  activity=['pl', 'pw', 'w', 'default']
[2024-02-27 04:09:49]  allow_lan=True
[2024-02-27 04:09:49]  allow_wan=False
[2024-02-27 04:09:49]  checkinputsize=True
[2024-02-27 04:09:49]  checksum={'adler32': '29291246'}
[2024-02-27 04:09:49]  dataset=hc_test.gangarbt.hc20286865.tid1109.BOINC-TEST.22
[2024-02-27 04:09:49]  ddm_activity=['write_lan', 'write_wan']
[2024-02-27 04:09:49]  ddmendpoint=NDGF-T1_DATADISK
[2024-02-27 04:09:49]  direct_access_lan=False
[2024-02-27 04:09:49]  direct_access_wan=False
[2024-02-27 04:09:49]  domain=
[2024-02-27 04:09:49]  filesize=170422
[2024-02-27 04:09:49]  filetype=log
[2024-02-27 04:09:49]  guid=34897b3a-5a0f-4030-8685-5f2071e27ed0
[2024-02-27 04:09:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-02-27 04:09:49]  is_tar=False
[2024-02-27 04:09:49]  lfn=7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log.tgz
[2024-02-27 04:09:49]  mtime=0
[2024-02-27 04:09:49]  protocol_id=None
[2024-02-27 04:09:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-02-27 04:09:49]  replicas=None
[2024-02-27 04:09:49]  scope=hc_test
[2024-02-27 04:09:49]  status=None
[2024-02-27 04:09:49]  status_code=0
[2024-02-27 04:09:49]  storage_token=
[2024-02-27 04:09:49]  surl=/var/lib/boinc-client/slots/6/PanDA_Pilot-6127926243/7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log.tgz
[2024-02-27 04:09:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/83/42/7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log.tgz
[2024-02-27 04:09:49]  workdir=None
[2024-02-27 04:09:49] ]
[2024-02-27 04:09:49] 2024-02-27 09:09:19,144 | INFO     | transferring file 7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log.tgz from /var/lib/boinc-client/slots/6/PanDA_Pilot-6127926243/7109aa5e-5e3e-4856-8787-b7d6f138
[2024-02-27 04:09:49] 2024-02-27 09:09:19,144 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/6/PanDA_Pilot-6127926243/7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log.tgz /var/lib/boinc-clien
[2024-02-27 04:09:49] 2024-02-27 09:09:19,158 | INFO     | adding to output.list: 7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/83/42/7109aa5e-5e3e-48
[2024-02-27 04:09:49] 2024-02-27 09:09:19,158 | INFO     | summary of transferred files:
[2024-02-27 04:09:49] 2024-02-27 09:09:19,158 | INFO     |  -- lfn=7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log.tgz, status_code=0, status=transferred
[2024-02-27 04:09:49] 2024-02-27 09:09:19,158 | INFO     | stage-out finished correctly
[2024-02-27 04:09:49] 2024-02-27 09:09:20,146 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-27 04:09:49] 2024-02-27 09:09:20,544 | WARNING  | process 34449 is no longer using CPU - aborting
[2024-02-27 04:09:49] 2024-02-27 09:09:20,544 | INFO     | will not send any job update
[2024-02-27 04:09:49] 2024-02-27 09:09:22,888 | INFO     | job 6127926243 has state=finished
[2024-02-27 04:09:49] 2024-02-27 09:09:22,888 | INFO     | preparing for final server update for job 6127926243 in state='finished'
[2024-02-27 04:09:49] 2024-02-27 09:09:22,888 | INFO     | this job has now completed (state=finished)
[2024-02-27 04:09:49] 2024-02-27 09:09:22,888 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-27 04:09:49] 2024-02-27 09:09:22,888 | INFO     | job 6127926243 has finished - writing final server update
[2024-02-27 04:09:49] 2024-02-27 09:09:22,889 | INFO     | total number of processed events: 2 (read)
[2024-02-27 04:09:49] 2024-02-27 09:09:22,909 | INFO     | executing command: lscpu
[2024-02-27 04:09:49] 2024-02-27 09:09:22,952 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-27 04:09:49] 2024-02-27 09:09:22,952 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-27 04:09:49] 2024-02-27 09:09:22,979 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-27 04:09:49] 2024-02-27 09:09:23,047 | INFO     | monitor loop #49: job 0:6127926243 is in state 'finished'
[2024-02-27 04:09:49] 2024-02-27 09:09:23,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-27 04:09:49] 2024-02-27 09:09:25,550 | INFO     | monitor loop #50: job 0:6127926243 is in state 'finished'
[2024-02-27 04:09:49] 2024-02-27 09:09:25,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-27 04:09:49] 2024-02-27 09:09:28,052 | INFO     | monitor loop #51: job 0:6127926243 is in state 'finished'
[2024-02-27 04:09:49] 2024-02-27 09:09:28,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-02-27 04:09:49] 2024-02-27 09:09:28,679 | INFO     | CPU arch script returned: x86-64-v3
[2024-02-27 04:09:49] 2024-02-27 09:09:28,679 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6127926243/memory_monitor_summary.json (trf name=prmon)
[2024-02-27 04:09:49] 2024-02-27 09:09:28,680 | INFO     | extracted standard info from prmon json
[2024-02-27 04:09:49] 2024-02-27 09:09:28,680 | INFO     | extracted standard memory fields from prmon json
[2024-02-27 04:09:49] 2024-02-27 09:09:28,680 | WARNING  | wrong length of table data, x=[1709024726.0, 1709024787.0], y=[949101.0, 1061023.0] (must be same and length>=4)
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | ..............................
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | . Timing measurements:
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | . get job = 0 s
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | . initial setup = 3 s
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | . payload setup = 3 s
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | . stage-in = 0 s
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | . payload execution = 536 s
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | . stage-out = 0 s
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | . log creation = 0 s
[2024-02-27 04:09:49] 2024-02-27 09:09:28,681 | INFO     | ..............................
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | 
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | job summary report
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | --------------------------------------------------
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | PanDA job id: 6127926243
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | task id: NULL
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | errors: (none)
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | pilot state: finished 
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | transexitcode: 0
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | exeerrorcode: 0
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | exeerrordiag: 
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | exitcode: 0
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | exitmsg: OK
[2024-02-27 04:09:49] 2024-02-27 09:09:28,736 | INFO     | cpuconsumptiontime: 135 s
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | nevents: 2
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | neventsw: 0
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | pid: 34449
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | pgrp: 34449
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | corecount: 4
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | event service: False
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | sizes: {0: 2384330, 1: 2385873, 4: 2386079, 11: 2386107, 544: 2407645, 546: 2416753, 547: 2416937, 555: 2417159}
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | --------------------------------------------------
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | 
[2024-02-27 04:09:49] 2024-02-27 09:09:28,737 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,756 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-27 04:09:49] 2024-02-27 09:09:28,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,756 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-27 04:09:49] 2024-02-27 09:09:28,756 | INFO     | job 6127926243 has completed (purged errors)
[2024-02-27 04:09:49] 2024-02-27 09:09:28,756 | INFO     | overall cleanup function is called
[2024-02-27 04:09:49] 2024-02-27 09:09:29,760 | INFO     | --- collectZombieJob: --- 10, [34449]
[2024-02-27 04:09:49] 2024-02-27 09:09:29,760 | INFO     | zombie collector waiting for pid 34449
[2024-02-27 04:09:49] 2024-02-27 09:09:29,760 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-27 04:09:49] 2024-02-27 09:09:30,764 | INFO     | collected zombie processes
[2024-02-27 04:09:49] 2024-02-27 09:09:30,764 | INFO     | will now attempt to kill all subprocesses of pid=34449
[2024-02-27 04:09:49] 2024-02-27 09:09:30,821 | INFO     | process IDs to be killed: [34449] (in reverse order)
[2024-02-27 04:09:49] 2024-02-27 09:09:30,857 | WARNING  | found no corresponding commands to process id(s)
[2024-02-27 04:09:49] 2024-02-27 09:09:30,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-27 04:09:49] 2024-02-27 09:09:30,860 | INFO     | did not find any defunct processes belonging to 34449
[2024-02-27 04:09:49] 2024-02-27 09:09:30,863 | INFO     | did not find any defunct processes belonging to 34449
[2024-02-27 04:09:49] 2024-02-27 09:09:30,863 | INFO     | ready for new job
[2024-02-27 04:09:49] 2024-02-27 09:09:30,863 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-27 04:09:49] 2024-02-27 09:09:30,864 | INFO     | **************************************
[2024-02-27 04:09:49] 2024-02-27 09:09:30,864 | INFO     | ***  PanDA Pilot version 3.7.1.50  ***
[2024-02-27 04:09:49] 2024-02-27 09:09:30,864 | INFO     | **************************************
[2024-02-27 04:09:49] 2024-02-27 09:09:30,864 | INFO     | 
[2024-02-27 04:09:49] 2024-02-27 09:09:30,885 | INFO     | architecture information:
[2024-02-27 04:09:49] 2024-02-27 09:09:30,885 | INFO     | executing command: cat /etc/os-release
[2024-02-27 04:09:49] 2024-02-27 09:09:30,897 | INFO     | cat /etc/os-release:
[2024-02-27 04:09:49] NAME="CentOS Linux"
[2024-02-27 04:09:49] VERSION="7 (Core)"
[2024-02-27 04:09:49] ID="centos"
[2024-02-27 04:09:49] ID_LIKE="rhel fedora"
[2024-02-27 04:09:49] VERSION_ID="7"
[2024-02-27 04:09:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-27 04:09:49] ANSI_COLOR="0;31"
[2024-02-27 04:09:49] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-27 04:09:49] HOME_URL="https://www.centos.org/"
[2024-02-27 04:09:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-27 04:09:49] 
[2024-02-27 04:09:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-27 04:09:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-27 04:09:49] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-27 04:09:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-27 04:09:49] 
[2024-02-27 04:09:49] 2024-02-27 09:09:30,897 | INFO     | **************************************
[2024-02-27 04:09:49] 2024-02-27 09:09:31,400 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2024-02-27 04:09:49] 2024-02-27 09:09:31,414 | INFO     | sufficient remaining disk space (376498552832 B)
[2024-02-27 04:09:49] 2024-02-27 09:09:31,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-27 04:09:49] 2024-02-27 09:09:31,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-27 04:09:49] 2024-02-27 09:09:31,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-27 04:09:49] 2024-02-27 09:09:31,453 | INFO     | found 0 job(s) in 20 queues
[2024-02-27 04:09:49] 2024-02-27 09:09:31,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-27 04:09:49] 2024-02-27 09:09:31,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-27 04:09:49] 2024-02-27 09:09:31,560 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-27 04:09:49] 2024-02-27 09:09:31,560 | INFO     | aborting loop
[2024-02-27 04:09:49] 2024-02-27 09:09:32,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-27 04:09:49] 2024-02-27 09:09:32,360 | INFO     | all data control threads have been joined
[2024-02-27 04:09:49] 2024-02-27 09:09:32,416 | INFO     | [job] retrieve thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:32,536 | INFO     | all job control threads have been joined
[2024-02-27 04:09:49] 2024-02-27 09:09:32,565 | INFO     | [job] job monitor thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:32,679 | INFO     | all payload control threads have been joined
[2024-02-27 04:09:49] 2024-02-27 09:09:32,977 | INFO     | [payload] validate_post thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,128 | INFO     | [payload] execute_payloads thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,364 | INFO     | [data] control thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,404 | INFO     | [job] validate thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,492 | INFO     | [data] copytool_in thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,532 | INFO     | [job] create_data_payload thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,540 | INFO     | [job] control thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,632 | INFO     | [payload] validate_pre thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,684 | INFO     | [payload] control thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:33,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-27 04:09:49] 2024-02-27 09:09:34,019 | INFO     | [payload] failed_post thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:34,221 | INFO     | [data] copytool_out thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:34,749 | INFO     | [job] queue monitor thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:35,420 | INFO     | [data] queue_monitor thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:41,940 | INFO     | job.realtimelogging is not enabled
[2024-02-27 04:09:49] 2024-02-27 09:09:42,944 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-27 04:09:49] 2024-02-27 09:09:44,484 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646178498368)>', '<ExcThread(monitor, started 140645465315072)>']
[2024-02-27 04:09:49] 2024-02-27 09:09:44,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-27 04:09:49] 2024-02-27 09:09:44,508 | INFO     | [monitor] control thread has ended
[2024-02-27 04:09:49] 2024-02-27 09:09:49,509 | INFO     | all workflow threads have been joined
[2024-02-27 04:09:49] 2024-02-27 09:09:49,509 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-27 04:09:49] 2024-02-27 09:09:49,509 | INFO     | traces error code: 0
[2024-02-27 04:09:49] 2024-02-27 09:09:49,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-27 04:09:49] 2024-02-27 09:09:49,548 [wrapper] ==== pilot stdout END ====
[2024-02-27 04:09:49] 2024-02-27 09:09:49,551 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-27 04:09:49] 2024-02-27 09:09:49,553 [wrapper] pilotpid: 27889
[2024-02-27 04:09:49] 2024-02-27 09:09:49,556 [wrapper] Pilot exit status: 0
[2024-02-27 04:09:49] 2024-02-27 09:09:49,563 [wrapper] pandaids: 6127926243
[2024-02-27 04:09:49] 2024-02-27 09:09:49,589 [wrapper] cleanup: SIGTERM to supervisor_pilot   27894 27890
[2024-02-27 04:09:49] 2024-02-27 09:09:49,591 [wrapper] Test setup, not cleaning
[2024-02-27 04:09:49] 2024-02-27 09:09:49,594 [wrapper] ==== wrapper stdout END ====
[2024-02-27 04:09:49] 2024-02-27 09:09:49,596 [wrapper] ==== wrapper stderr END ====
[2024-02-27 04:09:49] 2024-02-27 09:09:49,602 [wrapper] apfmon messages muted
[2024-02-27 04:09:49]  *** Error codes and diagnostics ***
[2024-02-27 04:09:49]     "exeErrorCode": 0,
[2024-02-27 04:09:49]     "exeErrorDiag": "",
[2024-02-27 04:09:49]     "pilotErrorCode": 0,
[2024-02-27 04:09:49]     "pilotErrorDiag": "",
[2024-02-27 04:09:49]  *** Listing of results directory ***
[2024-02-27 04:09:49] total 42956
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc   460308 Feb 27 00:19 pilot3.tar.gz
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc     4388 Feb 27 00:30 queuedata.json
[2024-02-27 04:09:49] -rwx------ 1 boinc boinc    32500 Feb 27 00:32 runpilot2-wrapper.sh
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc      107 Feb 27 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-27 04:09:49] -rwxr-xr-x 1 boinc boinc     7986 Feb 27 03:59 run_atlas
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc      112 Feb 27 03:59 job.xml
[2024-02-27 04:09:49] -rw-r--r-- 2 boinc boinc 38019645 Feb 27 03:59 EVNT.04972714._000023.pool.root.1
[2024-02-27 04:09:49] -rw-r--r-- 2 boinc boinc    17610 Feb 27 03:59 start_atlas.sh
[2024-02-27 04:09:49] drwxrwx--x 2 boinc boinc     4096 Feb 27 03:59 shared
[2024-02-27 04:09:49] -rw-r--r-- 2 boinc boinc   471986 Feb 27 03:59 input.tar.gz
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc     9363 Feb 27 03:59 init_data.xml
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc        0 Feb 27 03:59 boinc_lockfile
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc     2726 Feb 27 03:59 pandaJob.out
[2024-02-27 04:09:49] -rw------- 1 boinc boinc      424 Feb 27 03:59 setup.sh.local
[2024-02-27 04:09:49] -rw------- 1 boinc boinc   969727 Feb 27 03:59 agis_schedconf.cvmfs.json
[2024-02-27 04:09:49] -rw------- 1 boinc boinc        0 Feb 27 03:59 agis_ddmendpoints.agis.ALL.json
[2024-02-27 04:09:49] -rw------- 1 boinc boinc  1320368 Feb 27 03:59 cric_ddmendpoints.json
[2024-02-27 04:09:49] drwx------ 4 boinc boinc     4096 Feb 27 04:00 pilot3
[2024-02-27 04:09:49] -rw------- 1 boinc boinc       95 Feb 27 04:08 pilot_heartbeat.json
[2024-02-27 04:09:49] -rw------- 1 boinc boinc  1945961 Feb 27 04:09 Hits.hc_20286865.BOINC-TEST.7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.HITS.pool.root
[2024-02-27 04:09:49] -rw------- 1 boinc boinc      995 Feb 27 04:09 memory_monitor_summary.json
[2024-02-27 04:09:49] -rw------- 1 boinc boinc   170422 Feb 27 04:09 7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log.tgz
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc      532 Feb 27 04:09 boinc_task_state.xml
[2024-02-27 04:09:49] -rw------- 1 boinc boinc     7102 Feb 27 04:09 heartbeat.json
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc     8192 Feb 27 04:09 boinc_mmap_file
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc       24 Feb 27 04:09 wrapper_checkpoint.txt
[2024-02-27 04:09:49] -rw------- 1 boinc boinc     4295 Feb 27 04:09 pilotlog.txt
[2024-02-27 04:09:49] -rw------- 1 boinc boinc   107416 Feb 27 04:09 7109aa5e-5e3e-4856-8787-b7d6f138f7b4_25639.job.log
[2024-02-27 04:09:49] -rw------- 1 boinc boinc      510 Feb 27 04:09 output.list
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc      680 Feb 27 04:09 runtime_log
[2024-02-27 04:09:49] -rw------- 1 boinc boinc   296960 Feb 27 04:09 result.tar.gz
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc    11755 Feb 27 04:09 runtime_log.err
[2024-02-27 04:09:49] -rw------- 1 boinc boinc      623 Feb 27 04:09 jHNODmUG5y4n7Olcko1bjSoqABFKDmABFKDmyeZQDmoDLKDmXyIRJm.diag
[2024-02-27 04:09:49] -rw-r--r-- 1 boinc boinc    21054 Feb 27 04:09 stderr.txt
[2024-02-27 04:09:49] HITS file was successfully produced:
[2024-02-27 04:09:49] -rw------- 1 boinc boinc 1945961 Feb 27 04:09 shared/HITS.pool.root.1
[2024-02-27 04:09:49]  *** Contents of shared directory: ***
[2024-02-27 04:09:49] total 39812
[2024-02-27 04:09:49] -rw-r--r-- 2 boinc boinc 38019645 Feb 27 03:59 ATLAS.root_0
[2024-02-27 04:09:49] -rw-r--r-- 2 boinc boinc    17610 Feb 27 03:59 start_atlas.sh
[2024-02-27 04:09:49] -rw-r--r-- 2 boinc boinc   471986 Feb 27 03:59 input.tar.gz
[2024-02-27 04:09:49] -rw------- 1 boinc boinc  1945961 Feb 27 04:09 HITS.pool.root.1
[2024-02-27 04:09:49] -rw------- 1 boinc boinc   296960 Feb 27 04:09 result.tar.gz
04:09:51 (24137): run_atlas exited; CPU time 133.666246
04:09:51 (24137): called boinc_finish(0)

</stderr_txt>
]]>

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