Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
06:57:09 (546835): wrapper (7.7.26015): starting
06:57:09 (546835): wrapper: running run_atlas (--nthreads 4)
[2024-02-28 06:57:09] Arguments: --nthreads 4
[2024-02-28 06:57:09] Threads: 4
[2024-02-28 06:57:09] Checking for CVMFS
[2024-02-28 06:57:11] Probing /cvmfs/atlas.cern.ch... OK
[2024-02-28 06:57:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-02-28 06:57:12] Running cvmfs_config stat atlas.cern.ch
[2024-02-28 06:57:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-02-28 06:57:12] 2.9.2.0 547041 0 24608 129922 3 1 4158132 4194305 0 130560 0 0 0.000 963 804 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-02-28 06:57:12] CVMFS is ok
[2024-02-28 06:57:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-02-28 06:57:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-02-28 06:57:12] Small home clusters do not require a local http proxy but it is suggested if
[2024-02-28 06:57:12] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-02-28 06:57:12] Further information can be found at the LHC@home message board.
[2024-02-28 06:57:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-02-28 06:57:12] Checking for apptainer binary...
[2024-02-28 06:57:12] apptainer is not installed, using version from CVMFS
[2024-02-28 06:57:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-02-28 06:57:12] WC5950
[2024-02-28 06:57:12] apptainer works
[2024-02-28 06:57:12] Set ATHENA_PROC_NUMBER=4
[2024-02-28 06:57:12] Set ATHENA_CORE_NUMBER=4
[2024-02-28 06:57:12] Starting ATLAS job with PandaID=6129786907
[2024-02-28 06:57:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-02-28 07:10:08]  *** The last 200 lines of the pilot log: ***
[2024-02-28 07:10:08] 2024-02-28 12:09:40,393 | INFO     | [prepare_destinations][pl]: allowed (local) destinations: ['NDGF-T1_DATADISK']
[2024-02-28 07:10:08] 2024-02-28 12:09:40,393 | INFO     | [prepare_destinations][pl]: resolved default destination ddm=NDGF-T1_DATADISK
[2024-02-28 07:10:08] 2024-02-28 12:09:40,393 | INFO     | trying to use copytool=mv for activity=['pl', 'pw', 'w', 'default']
[2024-02-28 07:10:08] 2024-02-28 12:09:40,474 | INFO     | Resolved protocol to be used for transfer: '{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}': l
[2024-02-28 07:10:08] 2024-02-28 12:09:40,474 | INFO     | ready to transfer (stage-out) files: [ accessmode=
[2024-02-28 07:10:08]  activity=['pl', 'pw', 'w', 'default']
[2024-02-28 07:10:08]  allow_lan=True
[2024-02-28 07:10:08]  allow_wan=False
[2024-02-28 07:10:08]  checkinputsize=True
[2024-02-28 07:10:08]  checksum={'adler32': 'eacfa9bf'}
[2024-02-28 07:10:08]  dataset=hc_test.gangarbt.hc20286937.tid1231.BOINC-TEST.158
[2024-02-28 07:10:08]  ddm_activity=['write_lan', 'write_wan']
[2024-02-28 07:10:08]  ddmendpoint=NDGF-T1_DATADISK
[2024-02-28 07:10:08]  direct_access_lan=False
[2024-02-28 07:10:08]  direct_access_wan=False
[2024-02-28 07:10:08]  domain=
[2024-02-28 07:10:08]  filesize=154488
[2024-02-28 07:10:08]  filetype=log
[2024-02-28 07:10:08]  guid=6b2694ce-11c8-4c6d-8a4e-282bbe06a71d
[2024-02-28 07:10:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-02-28 07:10:08]  is_tar=False
[2024-02-28 07:10:08]  lfn=1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log.tgz
[2024-02-28 07:10:08]  mtime=0
[2024-02-28 07:10:08]  protocol_id=None
[2024-02-28 07:10:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-02-28 07:10:08]  replicas=None
[2024-02-28 07:10:08]  scope=hc_test
[2024-02-28 07:10:08]  status=None
[2024-02-28 07:10:08]  status_code=0
[2024-02-28 07:10:08]  storage_token=
[2024-02-28 07:10:08]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6129786907/1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log.tgz
[2024-02-28 07:10:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/a1/77/1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log.tgz
[2024-02-28 07:10:08]  workdir=None
[2024-02-28 07:10:08] ]
[2024-02-28 07:10:08] 2024-02-28 12:09:40,501 | INFO     | transferring file 1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log.tgz from /var/lib/boinc-client/slots/3/PanDA_Pilot-6129786907/1b78d6f2-11e0-44f5-8cfc-ca6920
[2024-02-28 07:10:08] 2024-02-28 12:09:40,501 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6129786907/1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log.tgz /var/lib/boinc-cli
[2024-02-28 07:10:08] 2024-02-28 12:09:40,517 | INFO     | adding to output.list: 1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/a1/77/1b78d6f2-11e0-
[2024-02-28 07:10:08] 2024-02-28 12:09:40,517 | INFO     | summary of transferred files:
[2024-02-28 07:10:08] 2024-02-28 12:09:40,517 | INFO     |  -- lfn=1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log.tgz, status_code=0, status=transferred
[2024-02-28 07:10:08] 2024-02-28 12:09:40,517 | INFO     | stage-out finished correctly
[2024-02-28 07:10:08] 2024-02-28 12:09:41,028 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-02-28 07:10:08] 2024-02-28 12:09:41,083 | INFO     | job 6129786907 has state=finished
[2024-02-28 07:10:08] 2024-02-28 12:09:41,083 | INFO     | preparing for final server update for job 6129786907 in state='finished'
[2024-02-28 07:10:08] 2024-02-28 12:09:41,084 | INFO     | this job has now completed (state=finished)
[2024-02-28 07:10:08] 2024-02-28 12:09:41,084 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-02-28 07:10:08] 2024-02-28 12:09:41,084 | INFO     | job 6129786907 has finished - writing final server update
[2024-02-28 07:10:08] 2024-02-28 12:09:41,084 | INFO     | total number of processed events: 2 (read)
[2024-02-28 07:10:08] 2024-02-28 12:09:41,106 | INFO     | executing command: lscpu
[2024-02-28 07:10:08] 2024-02-28 12:09:41,148 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-02-28 07:10:08] 2024-02-28 12:09:41,149 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-02-28 07:10:08] 2024-02-28 12:09:41,194 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-02-28 07:10:08] 2024-02-28 12:09:49,008 | INFO     | CPU arch script returned: x86-64-v3
[2024-02-28 07:10:08] 2024-02-28 12:09:49,008 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6129786907/memory_monitor_summary.json (trf name=prmon)
[2024-02-28 07:10:08] 2024-02-28 12:09:49,011 | INFO     | extracted standard info from prmon json
[2024-02-28 07:10:08] 2024-02-28 12:09:49,011 | INFO     | extracted standard memory fields from prmon json
[2024-02-28 07:10:08] 2024-02-28 12:09:49,012 | WARNING  | wrong length of table data, x=[1709121773.0, 1709121834.0, 1709121895.0, 1709121956.0, 1709122017.0], y=[928153.0, 1058436.0, 1242652.0, 1649918.0, 1665124.0] (mus
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | ..............................
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | . Timing measurements:
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | . get job = 0 s
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | . initial setup = 2 s
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | . payload setup = 5 s
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | . stage-in = 0 s
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | . payload execution = 712 s
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | . stage-out = 0 s
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | . log creation = 0 s
[2024-02-28 07:10:08] 2024-02-28 12:09:49,013 | INFO     | ..............................
[2024-02-28 07:10:08] 2024-02-28 12:09:49,073 | INFO     | 
[2024-02-28 07:10:08] 2024-02-28 12:09:49,073 | INFO     | job summary report
[2024-02-28 07:10:08] 2024-02-28 12:09:49,073 | INFO     | --------------------------------------------------
[2024-02-28 07:10:08] 2024-02-28 12:09:49,073 | INFO     | PanDA job id: 6129786907
[2024-02-28 07:10:08] 2024-02-28 12:09:49,073 | INFO     | task id: NULL
[2024-02-28 07:10:08] 2024-02-28 12:09:49,074 | INFO     | errors: (none)
[2024-02-28 07:10:08] 2024-02-28 12:09:49,074 | INFO     | status: LOG_TRANSFER = DONE 
[2024-02-28 07:10:08] 2024-02-28 12:09:49,074 | INFO     | pilot state: finished 
[2024-02-28 07:10:08] 2024-02-28 12:09:49,077 | WARNING  | process 558398 is no longer using CPU - aborting
[2024-02-28 07:10:08] 2024-02-28 12:09:49,077 | INFO     | transexitcode: 0
[2024-02-28 07:10:08] 2024-02-28 12:09:49,077 | INFO     | aborting job monitoring since job object (job id=6129786907) has expired
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | exeerrorcode: 0
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | exeerrordiag: 
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | exitcode: 0
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | exitmsg: OK
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | cpuconsumptiontime: 348 s
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | nevents: 2
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | neventsw: 0
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | pid: 558398
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | pgrp: 558398
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | corecount: 4
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | event service: False
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | sizes: {0: 2382345, 3: 2382551, 11: 2382579, 722: 2411480, 723: 2411480, 731: 2411702}
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | --------------------------------------------------
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | 
[2024-02-28 07:10:08] 2024-02-28 12:09:49,078 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue jobs had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue payloads had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue data_in had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue data_out had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue completed_jobids has 1 job(s)
[2024-02-28 07:10:08] 2024-02-28 12:09:49,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,096 | INFO     | queue messages had 0 job(s) [purged]
[2024-02-28 07:10:08] 2024-02-28 12:09:49,096 | INFO     | job 6129786907 has completed (purged errors)
[2024-02-28 07:10:08] 2024-02-28 12:09:49,096 | INFO     | overall cleanup function is called
[2024-02-28 07:10:08] 2024-02-28 12:09:50,102 | INFO     | --- collectZombieJob: --- 10, [558398]
[2024-02-28 07:10:08] 2024-02-28 12:09:50,102 | INFO     | zombie collector waiting for pid 558398
[2024-02-28 07:10:08] 2024-02-28 12:09:50,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-02-28 07:10:08] 2024-02-28 12:09:51,104 | INFO     | collected zombie processes
[2024-02-28 07:10:08] 2024-02-28 12:09:51,105 | INFO     | will now attempt to kill all subprocesses of pid=558398
[2024-02-28 07:10:08] 2024-02-28 12:09:51,149 | INFO     | process IDs to be killed: [558398] (in reverse order)
[2024-02-28 07:10:08] 2024-02-28 12:09:51,182 | WARNING  | found no corresponding commands to process id(s)
[2024-02-28 07:10:08] 2024-02-28 12:09:51,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-02-28 07:10:08] 2024-02-28 12:09:51,185 | INFO     | did not find any defunct processes belonging to 558398
[2024-02-28 07:10:08] 2024-02-28 12:09:51,188 | INFO     | did not find any defunct processes belonging to 558398
[2024-02-28 07:10:08] 2024-02-28 12:09:51,188 | INFO     | ready for new job
[2024-02-28 07:10:08] 2024-02-28 12:09:51,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-02-28 07:10:08] 2024-02-28 12:09:51,188 | INFO     | **************************************
[2024-02-28 07:10:08] 2024-02-28 12:09:51,189 | INFO     | ***  PanDA Pilot version 3.7.1.50  ***
[2024-02-28 07:10:08] 2024-02-28 12:09:51,189 | INFO     | **************************************
[2024-02-28 07:10:08] 2024-02-28 12:09:51,189 | INFO     | 
[2024-02-28 07:10:08] 2024-02-28 12:09:51,213 | INFO     | architecture information:
[2024-02-28 07:10:08] 2024-02-28 12:09:51,213 | INFO     | executing command: cat /etc/os-release
[2024-02-28 07:10:08] 2024-02-28 12:09:51,223 | INFO     | cat /etc/os-release:
[2024-02-28 07:10:08] NAME="CentOS Linux"
[2024-02-28 07:10:08] VERSION="7 (Core)"
[2024-02-28 07:10:08] ID="centos"
[2024-02-28 07:10:08] ID_LIKE="rhel fedora"
[2024-02-28 07:10:08] VERSION_ID="7"
[2024-02-28 07:10:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-02-28 07:10:08] ANSI_COLOR="0;31"
[2024-02-28 07:10:08] CPE_NAME="cpe:/o:centos:centos:7"
[2024-02-28 07:10:08] HOME_URL="https://www.centos.org/"
[2024-02-28 07:10:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-02-28 07:10:08] 
[2024-02-28 07:10:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-02-28 07:10:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-02-28 07:10:08] REDHAT_SUPPORT_PRODUCT="centos"
[2024-02-28 07:10:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-02-28 07:10:08] 
[2024-02-28 07:10:08] 2024-02-28 12:09:51,224 | INFO     | **************************************
[2024-02-28 07:10:08] 2024-02-28 12:09:51,726 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2024-02-28 07:10:08] 2024-02-28 12:09:51,739 | INFO     | sufficient remaining disk space (373426225152 B)
[2024-02-28 07:10:08] 2024-02-28 12:09:51,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-02-28 07:10:08] 2024-02-28 12:09:51,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-02-28 07:10:08] 2024-02-28 12:09:51,740 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-02-28 07:10:08] 2024-02-28 12:09:51,740 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-02-28 07:10:08] 2024-02-28 12:09:51,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-02-28 07:10:08] 2024-02-28 12:09:51,740 | INFO     | found 0 job(s) in 20 queues
[2024-02-28 07:10:08] 2024-02-28 12:09:51,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-02-28 07:10:08] 2024-02-28 12:09:51,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-02-28 07:10:08] 2024-02-28 12:09:52,022 | INFO     | all job control threads have been joined
[2024-02-28 07:10:08] 2024-02-28 12:09:52,182 | INFO     | all data control threads have been joined
[2024-02-28 07:10:08] 2024-02-28 12:09:52,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-02-28 07:10:08] 2024-02-28 12:09:52,585 | INFO     | aborting loop
[2024-02-28 07:10:08] 2024-02-28 12:09:52,740 | INFO     | all payload control threads have been joined
[2024-02-28 07:10:08] 2024-02-28 12:09:52,744 | INFO     | [job] retrieve thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,027 | INFO     | [job] control thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,037 | INFO     | [job] validate thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,069 | INFO     | [data] copytool_in thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,145 | INFO     | [job] create_data_payload thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,175 | INFO     | [payload] execute_payloads thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,188 | INFO     | [data] control thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,256 | INFO     | [payload] validate_pre thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,590 | INFO     | [job] job monitor thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,745 | INFO     | [payload] control thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:53,745 | INFO     | [data] copytool_out thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:54,025 | INFO     | [payload] validate_post thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:54,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-02-28 07:10:08] 2024-02-28 12:09:54,124 | INFO     | [payload] failed_post thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:55,087 | INFO     | [job] queue monitor thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:09:55,746 | INFO     | [data] queue_monitor thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:10:02,180 | INFO     | job.realtimelogging is not enabled
[2024-02-28 07:10:08] 2024-02-28 12:10:03,185 | INFO     | [payload] run_realtimelog thread has finished
[2024-02-28 07:10:08] 2024-02-28 12:10:03,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673044612928)>', '<ExcThread(monitor, started 140672610834176)>']
[2024-02-28 07:10:08] 2024-02-28 12:10:03,793 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-02-28 07:10:08] 2024-02-28 12:10:03,793 | INFO     | [monitor] control thread has ended
[2024-02-28 07:10:08] 2024-02-28 12:10:08,437 | INFO     | all workflow threads have been joined
[2024-02-28 07:10:08] 2024-02-28 12:10:08,437 | INFO     | end of generic workflow (traces error code: 0)
[2024-02-28 07:10:08] 2024-02-28 12:10:08,437 | INFO     | traces error code: 0
[2024-02-28 07:10:08] 2024-02-28 12:10:08,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-02-28 07:10:08] 2024-02-28 12:10:08,481 [wrapper] ==== pilot stdout END ====
[2024-02-28 07:10:08] 2024-02-28 12:10:08,484 [wrapper] ==== wrapper stdout RESUME ====
[2024-02-28 07:10:08] 2024-02-28 12:10:08,487 [wrapper] pilotpid: 551158
[2024-02-28 07:10:08] 2024-02-28 12:10:08,490 [wrapper] Pilot exit status: 0
[2024-02-28 07:10:08] 2024-02-28 12:10:08,497 [wrapper] pandaids: 6129786907
[2024-02-28 07:10:08] 2024-02-28 12:10:08,516 [wrapper] cleanup: SIGTERM to supervisor_pilot  551163 551159
[2024-02-28 07:10:08] 2024-02-28 12:10:08,519 [wrapper] Test setup, not cleaning
[2024-02-28 07:10:08] 2024-02-28 12:10:08,521 [wrapper] ==== wrapper stdout END ====
[2024-02-28 07:10:08] 2024-02-28 12:10:08,524 [wrapper] ==== wrapper stderr END ====
[2024-02-28 07:10:08] 2024-02-28 12:10:08,529 [wrapper] apfmon messages muted
[2024-02-28 07:10:08]  *** Error codes and diagnostics ***
[2024-02-28 07:10:08]     "exeErrorCode": 0,
[2024-02-28 07:10:08]     "exeErrorDiag": "",
[2024-02-28 07:10:08]     "pilotErrorCode": 0,
[2024-02-28 07:10:08]     "pilotErrorDiag": "",
[2024-02-28 07:10:08]  *** Listing of results directory ***
[2024-02-28 07:10:08] total 45720
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc   460308 Feb 28 05:54 pilot3.tar.gz
[2024-02-28 07:10:08] -rwx------ 1 boinc boinc    32516 Feb 28 06:10 runpilot2-wrapper.sh
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc     4388 Feb 28 06:10 queuedata.json
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc      107 Feb 28 06:57 wrapper_26015_x86_64-pc-linux-gnu
[2024-02-28 07:10:08] -rwxr-xr-x 1 boinc boinc     7986 Feb 28 06:57 run_atlas
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc      112 Feb 28 06:57 job.xml
[2024-02-28 07:10:08] -rw-r--r-- 2 boinc boinc 39611081 Feb 28 06:57 EVNT.04972714._000022.pool.root.1
[2024-02-28 07:10:08] -rw-r--r-- 2 boinc boinc    17618 Feb 28 06:57 start_atlas.sh
[2024-02-28 07:10:08] drwxrwx--x 2 boinc boinc     4096 Feb 28 06:57 shared
[2024-02-28 07:10:08] -rw-r--r-- 2 boinc boinc   472038 Feb 28 06:57 input.tar.gz
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc     9363 Feb 28 06:57 init_data.xml
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc        0 Feb 28 06:57 boinc_lockfile
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc     2754 Feb 28 06:57 pandaJob.out
[2024-02-28 07:10:08] -rw------- 1 boinc boinc      424 Feb 28 06:57 setup.sh.local
[2024-02-28 07:10:08] -rw------- 1 boinc boinc   968907 Feb 28 06:57 agis_schedconf.cvmfs.json
[2024-02-28 07:10:08] -rw------- 1 boinc boinc        0 Feb 28 06:57 agis_ddmendpoints.agis.ALL.json
[2024-02-28 07:10:08] -rw------- 1 boinc boinc  1318137 Feb 28 06:57 cric_ddmendpoints.json
[2024-02-28 07:10:08] drwx------ 4 boinc boinc     4096 Feb 28 06:57 pilot3
[2024-02-28 07:10:08] -rw------- 1 boinc boinc       95 Feb 28 07:09 pilot_heartbeat.json
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc      533 Feb 28 07:09 boinc_task_state.xml
[2024-02-28 07:10:08] -rw------- 1 boinc boinc  1594879 Feb 28 07:09 output.1.1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.pool.root
[2024-02-28 07:10:08] -rw------- 1 boinc boinc      997 Feb 28 07:09 memory_monitor_summary.json
[2024-02-28 07:10:08] -rw------- 1 boinc boinc   154488 Feb 28 07:09 1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log.tgz
[2024-02-28 07:10:08] -rw------- 1 boinc boinc     6605 Feb 28 07:09 heartbeat.json
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc     8192 Feb 28 07:10 boinc_mmap_file
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc       24 Feb 28 07:10 wrapper_checkpoint.txt
[2024-02-28 07:10:08] -rw------- 1 boinc boinc     4418 Feb 28 07:10 pilotlog.txt
[2024-02-28 07:10:08] -rw------- 1 boinc boinc   122179 Feb 28 07:10 1b78d6f2-11e0-44f5-8cfc-ca69208974f3_60791.1.job.log
[2024-02-28 07:10:08] -rw------- 1 boinc boinc      464 Feb 28 07:10 output.list
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc      748 Feb 28 07:10 runtime_log
[2024-02-28 07:10:08] -rw------- 1 boinc boinc  1894400 Feb 28 07:10 result.tar.gz
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc    12080 Feb 28 07:10 runtime_log.err
[2024-02-28 07:10:08] -rw------- 1 boinc boinc      623 Feb 28 07:10 JTSKDmd0Wz4n7Olcko1bjSoqABFKDmABFKDmyeZQDmnFLKDmkv4bsm.diag
[2024-02-28 07:10:08] -rw-r--r-- 1 boinc boinc    21251 Feb 28 07:10 stderr.txt
[2024-02-28 07:10:08] HITS file was successfully produced:
[2024-02-28 07:10:08] -rw------- 1 boinc boinc 1594879 Feb 28 07:09 shared/HITS.pool.root.1
[2024-02-28 07:10:08]  *** Contents of shared directory: ***
[2024-02-28 07:10:08] total 42584
[2024-02-28 07:10:08] -rw-r--r-- 2 boinc boinc 39611081 Feb 28 06:57 ATLAS.root_0
[2024-02-28 07:10:08] -rw-r--r-- 2 boinc boinc    17618 Feb 28 06:57 start_atlas.sh
[2024-02-28 07:10:08] -rw-r--r-- 2 boinc boinc   472038 Feb 28 06:57 input.tar.gz
[2024-02-28 07:10:08] -rw------- 1 boinc boinc  1594879 Feb 28 07:09 HITS.pool.root.1
[2024-02-28 07:10:08] -rw------- 1 boinc boinc  1894400 Feb 28 07:10 result.tar.gz
07:10:09 (546835): run_atlas exited; CPU time 346.084732
07:10:09 (546835): called boinc_finish(0)

</stderr_txt>
]]>

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