Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
05:24:21 (276566): wrapper (7.7.26015): starting
05:24:21 (276566): wrapper: running run_atlas (--nthreads 2)
[2025-07-01 05:24:21] Arguments: --nthreads 2
[2025-07-01 05:24:21] Threads: 2
[2025-07-01 05:24:21] Checking for CVMFS
[2025-07-01 05:24:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-01 05:24:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-01 05:24:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-01 05:24:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-01 05:24:22] 2.13.1.0 82828 1315 35648 147789 3 1 3684126 4096001 0 130560 0 0 50.000 1293 938 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-01 05:24:22] CVMFS is ok
[2025-07-01 05:24:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-01 05:24:22] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-01 05:24:22] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-01 05:24:22] Further information can be found at the LHC@home message board.
[2025-07-01 05:24:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-01 05:24:22] Checking for apptainer binary...
[2025-07-01 05:24:22] apptainer is not installed, using version from CVMFS
[2025-07-01 05:24:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-01 05:24:23] uwe-Inspiron-1545
[2025-07-01 05:24:23] apptainer works
[2025-07-01 05:24:23] Set ATHENA_PROC_NUMBER=2
[2025-07-01 05:24:23] Set ATHENA_CORE_NUMBER=2
[2025-07-01 05:24:24] Starting ATLAS job with PandaID=6715416927
[2025-07-01 05:24:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-01 05:28:59]  *** The last 200 lines of the pilot log: ***
[2025-07-01 05:28:59] 2025-07-01 03:28:26,695 | WARNING  | found no stored workdir sizes
[2025-07-01 05:28:59] 2025-07-01 03:28:26,696 | INFO     | will not add max space = 0 B to job metrics
[2025-07-01 05:28:59] 2025-07-01 03:28:26,696 | INFO     | could have reported an average CPU frequency of 1994 MHz (4 samples)
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | ..............................
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . Timing measurements:
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . get job = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . initial setup = 2 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . payload setup = 5 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . stage-in = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . payload execution = 12 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . stage-out = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . log creation = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | ..............................
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/4/PanDA_Pilot-6715416927/pilotlog.txt
[2025-07-01 05:28:59] 2025-07-01 03:28:26,718 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-01 05:28:59] - Log from pilotlog.txt -
[2025-07-01 05:28:59] 2025-07-01 03:28:25,980 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-01 05:28:59] 2025-07-01 03:28:26,693 | INFO     | CPU arch script returned: x86-64-v1
[2025-07-01 05:28:59] 2025-07-01 03:28:26,693 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1994.971
[2025-07-01 05:28:59] 2025-07-01 03:28:26,695 | WARNING  | file does not exist either: /var/lib/boinc-client/slots/4/PanDA_Pilot-6715416927/memory_monitor_output.txt
[2025-07-01 05:28:59] 2025-07-01 03:28:26,695 | INFO     | memory summary dictionary not yet available
[2025-07-01 05:28:59] 2025-07-01 03:28:26,695 | WARNING  | found no stored workdir sizes
[2025-07-01 05:28:59] 2025-07-01 03:28:26,696 | INFO     | will not add max space = 0 B to job metrics
[2025-07-01 05:28:59] 2025-07-01 03:28:26,696 | INFO     | could have reported an average CPU frequency of 1994 MHz (4 samples)
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | ..............................
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . Timing measurements:
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . get job = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . initial setup = 2 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . payload setup = 5 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . stage-in = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . payload execution = 12 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . stage-out = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . log creation = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | ..............................
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/4/PanDA_Pilot-6715416927/pilotlog.txt
[2025-07-01 05:28:59] 2025-07-01 03:28:26,719 | WARNING  | 
[2025-07-01 05:28:59] [begin log extracts]
[2025-07-01 05:28:59] - Log from pilotlog.txt -
[2025-07-01 05:28:59] 2025-07-01 03:28:25,980 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-01 05:28:59] 2025-07-01 03:28:26,693 | INFO     | CPU arch script returned: x86-64-v1
[2025-07-01 05:28:59] 2025-07-01 03:28:26,693 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1994.971
[2025-07-01 05:28:59] 2025-07-01 03:28:26,695 | WARNING  | file does not exist either: /var/lib/boinc-client/slots/4/PanDA_Pilot-6715416927/memory_monitor_output.txt
[2025-07-01 05:28:59] 2025-07-01 03:28:26,695 | INFO     | memory summary dictionary not yet available
[2025-07-01 05:28:59] 2025-07-01 03:28:26,695 | WARNING  | found no stored workdir sizes
[2025-07-01 05:28:59] 2025-07-01 03:28:26,696 | INFO     | will not add max space = 0 B to job metrics
[2025-07-01 05:28:59] 2025-07-01 03:28:26,696 | INFO     | could have reported an average CPU frequency of 1994 MHz (4 samples)
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | ..............................
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . Timing measurements:
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . get job = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,697 | INFO     | . initial setup = 2 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . payload setup = 5 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . stage-in = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . payload execution = 12 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . stage-out = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,698 | INFO     | . log creation = 0 s
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | ..............................
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-01 05:28:59] 2025-07-01 03:28:26,699 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/4/PanDA_Pilot-6715416927/pilotlog.txt
[2025-07-01 05:28:59] [end log extracts]
[2025-07-01 05:28:59] 2025-07-01 03:28:26,719 | WARNING  | pilotErrorCodes = [1305, 1187] (will report primary/first error code)
[2025-07-01 05:28:59] 2025-07-01 03:28:26,720 | WARNING  | pilotErrorDiags = ['Failed to execute payload:/bin/bash: Gen_tf.py: command not found', 'Payload metadata does not exist'] (will report primary/first error diag)
[2025-07-01 05:28:59] 2025-07-01 03:28:27,083 | INFO     | 
[2025-07-01 05:28:59] 2025-07-01 03:28:27,083 | INFO     | job summary report
[2025-07-01 05:28:59] 2025-07-01 03:28:27,083 | INFO     | --------------------------------------------------
[2025-07-01 05:28:59] 2025-07-01 03:28:27,083 | INFO     | PanDA job id: 6715416927
[2025-07-01 05:28:59] 2025-07-01 03:28:27,084 | INFO     | task id: NULL
[2025-07-01 05:28:59] 2025-07-01 03:28:27,084 | INFO     | error 1/2: 1305: Failed to execute payload:/bin/bash: Gen_tf.py: command not found
[2025-07-01 05:28:59] 
[2025-07-01 05:28:59] 2025-07-01 03:28:27,084 | INFO     | error 2/2: 1187: Payload metadata does not exist
[2025-07-01 05:28:59] 2025-07-01 03:28:27,084 | INFO     | pilot error code: 1187
[2025-07-01 05:28:59] 2025-07-01 03:28:27,084 | INFO     | pilot error diag: metadata does not exist: /var/lib/boinc-client/slots/4/PanDA_Pilot-6715416927/metadata.xml
[2025-07-01 05:28:59] 2025-07-01 03:28:27,084 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-01 05:28:59] 2025-07-01 03:28:27,085 | INFO     | pilot state: failed 
[2025-07-01 05:28:59] 2025-07-01 03:28:27,085 | INFO     | transexitcode: 127
[2025-07-01 05:28:59] 2025-07-01 03:28:27,085 | INFO     | exeerrorcode: 0
[2025-07-01 05:28:59] 2025-07-01 03:28:27,085 | INFO     | exeerrordiag: 
[2025-07-01 05:28:59] 2025-07-01 03:28:27,085 | INFO     | exitcode: 0
[2025-07-01 05:28:59] 2025-07-01 03:28:27,085 | INFO     | exitmsg: 
[2025-07-01 05:28:59] 2025-07-01 03:28:27,086 | INFO     | cpuconsumptiontime: 15 s
[2025-07-01 05:28:59] 2025-07-01 03:28:27,086 | INFO     | nevents: 0
[2025-07-01 05:28:59] 2025-07-01 03:28:27,086 | INFO     | neventsw: 0
[2025-07-01 05:28:59] 2025-07-01 03:28:27,086 | INFO     | pid: 285701
[2025-07-01 05:28:59] 2025-07-01 03:28:27,086 | INFO     | pgrp: 285701
[2025-07-01 05:28:59] 2025-07-01 03:28:27,086 | INFO     | corecount: 2
[2025-07-01 05:28:59] 2025-07-01 03:28:27,087 | INFO     | event service: False
[2025-07-01 05:28:59] 2025-07-01 03:28:27,087 | INFO     | sizes: {0: 2365251, 1: 2365506, 2: 2365506, 7: 2365796, 12: 2365824, 81: 2370286, 82: 2374623, 83: 2374679, 207: 2374703}
[2025-07-01 05:28:59] 2025-07-01 03:28:27,087 | INFO     | --------------------------------------------------
[2025-07-01 05:28:59] 2025-07-01 03:28:27,087 | INFO     | 
[2025-07-01 05:28:59] 2025-07-01 03:28:27,087 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-07-01 05:28:59] 2025-07-01 03:28:27,114 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,115 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-01 05:28:59] 2025-07-01 03:28:27,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,118 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-01 05:28:59] 2025-07-01 03:28:27,118 | INFO     | job 6715416927 has completed (purged errors)
[2025-07-01 05:28:59] 2025-07-01 03:28:27,119 | INFO     | overall cleanup function is called
[2025-07-01 05:28:59] 2025-07-01 03:28:28,125 | INFO     | --- collectZombieJob: --- 10, [285701]
[2025-07-01 05:28:59] 2025-07-01 03:28:28,125 | INFO     | zombie collector waiting for pid 285701
[2025-07-01 05:28:59] 2025-07-01 03:28:28,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-01 05:28:59] 2025-07-01 03:28:28,126 | INFO     | collected zombie processes
[2025-07-01 05:28:59] 2025-07-01 03:28:28,126 | INFO     | will attempt to kill all subprocesses of pid=285701
[2025-07-01 05:28:59] 2025-07-01 03:28:28,272 | INFO     | process IDs to be killed: [285701] (in reverse order)
[2025-07-01 05:28:59] 2025-07-01 03:28:28,323 | WARNING  | found no corresponding commands to process id(s)
[2025-07-01 05:28:59] 2025-07-01 03:28:28,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-01 05:28:59] 2025-07-01 03:28:28,328 | INFO     | did not find any defunct processes belonging to 285701
[2025-07-01 05:28:59] 2025-07-01 03:28:28,332 | INFO     | did not find any defunct processes belonging to 285701
[2025-07-01 05:28:59] 2025-07-01 03:28:28,333 | INFO     | ready for new job
[2025-07-01 05:28:59] 2025-07-01 03:28:28,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-01 05:28:59] 2025-07-01 03:28:28,335 | INFO     | ***************************************
[2025-07-01 05:28:59] 2025-07-01 03:28:28,335 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-01 05:28:59] 2025-07-01 03:28:28,335 | INFO     | ***************************************
[2025-07-01 05:28:59] 2025-07-01 03:28:28,336 | INFO     | 
[2025-07-01 05:28:59] 2025-07-01 03:28:28,336 | INFO     | architecture information:
[2025-07-01 05:28:59] 2025-07-01 03:28:28,337 | INFO     | executing command: cat /etc/os-release
[2025-07-01 05:28:59] 2025-07-01 03:28:28,356 | INFO     | cat /etc/os-release:
[2025-07-01 05:28:59] NAME="CentOS Linux"
[2025-07-01 05:28:59] VERSION="7 (Core)"
[2025-07-01 05:28:59] ID="centos"
[2025-07-01 05:28:59] ID_LIKE="rhel fedora"
[2025-07-01 05:28:59] VERSION_ID="7"
[2025-07-01 05:28:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-01 05:28:59] ANSI_COLOR="0;31"
[2025-07-01 05:28:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-01 05:28:59] HOME_URL="https://www.centos.org/"
[2025-07-01 05:28:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-01 05:28:59] 
[2025-07-01 05:28:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-01 05:28:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-01 05:28:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-01 05:28:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-01 05:28:59] 
[2025-07-01 05:28:59] 2025-07-01 03:28:28,356 | INFO     | ***************************************
[2025-07-01 05:28:59] 2025-07-01 03:28:28,860 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-07-01 05:28:59] 2025-07-01 03:28:28,884 | INFO     | sufficient remaining disk space (97012154368 B)
[2025-07-01 05:28:59] 2025-07-01 03:28:28,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-01 05:28:59] 2025-07-01 03:28:28,885 | INFO     | current server update state: UPDATING_FINAL
[2025-07-01 05:28:59] 2025-07-01 03:28:28,886 | INFO     | update_server=False
[2025-07-01 05:28:59] 2025-07-01 03:28:28,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-01 05:28:59] 2025-07-01 03:28:29,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-01 05:28:59] 2025-07-01 03:28:29,489 | INFO     | aborting loop
[2025-07-01 05:28:59] 2025-07-01 03:28:29,563 | INFO     | all data control threads have been joined
[2025-07-01 05:28:59] 2025-07-01 03:28:29,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-01 05:28:59] 2025-07-01 03:28:29,785 | INFO     | all job control threads have been joined
[2025-07-01 05:28:59] 2025-07-01 03:28:29,891 | INFO     | [job] retrieve thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:29,928 | INFO     | all payload control threads have been joined
[2025-07-01 05:28:59] 2025-07-01 03:28:30,040 | INFO     | [job] create_data_payload thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:30,109 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-01 05:28:59] 2025-07-01 03:28:30,138 | INFO     | [payload] failed_post thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:30,371 | INFO     | [payload] validate_pre thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:30,494 | INFO     | [job] job monitor thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:30,569 | INFO     | [data] control thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:30,667 | INFO     | [data] copytool_in thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:30,727 | INFO     | [payload] execute_payloads thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:30,790 | INFO     | [job] control thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:30,933 | INFO     | [payload] control thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:31,106 | INFO     | [payload] validate_post thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:31,232 | INFO     | [job] validate thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:31,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:31,615 | INFO     | [data] copytool_out thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:31,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-01 05:28:59] 2025-07-01 03:28:32,859 | INFO     | [job] queue monitor thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:34,115 | INFO     | [data] queue_monitor thread has finished
[2025-07-01 05:28:59] 2025-07-01 03:28:35,501 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131487521683264)>', '<ExcThread(monitor, started 131486984427264)>']
[2025-07-01 05:28:59] 2025-07-01 03:28:40,526 | INFO     | all workflow threads have been joined
[2025-07-01 05:28:59] 2025-07-01 03:28:40,526 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-01 05:28:59] 2025-07-01 03:28:40,527 | INFO     | traces error code: 0
[2025-07-01 05:28:59] 2025-07-01 03:28:40,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-01 05:28:59] 2025-07-01 03:28:59,297 | INFO     | PID=280178 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC-TEST -i PR 
[2025-07-01 05:28:59] 2025-07-01 03:28:59,299 | INFO     | found 0 job(s) in 20 queues
[2025-07-01 05:28:59] 2025-07-01 03:28:59,299 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-01 05:28:59] 2025-07-01 03:28:59,299 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-01 05:28:59] 2025-07-01 03:28:59,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-01 05:28:59] 2025-07-01 03:28:59,300 | INFO     | [monitor] control thread has ended
[2025-07-01 05:28:59] 2025-07-01 03:28:59,457 [wrapper] ==== pilot stdout END ====
[2025-07-01 05:28:59] 2025-07-01 03:28:59,461 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-01 05:28:59] 2025-07-01 03:28:59,466 [wrapper] pilotpid: 280178
[2025-07-01 05:28:59] 2025-07-01 03:28:59,470 [wrapper] Pilot exit status: 0
[2025-07-01 05:28:59] 2025-07-01 03:28:59,491 [wrapper] pandaids: 6715416927
[2025-07-01 05:28:59] 2025-07-01 03:28:59,525 [wrapper] cleanup supervisor_pilot  280184 280179
[2025-07-01 05:28:59] 2025-07-01 03:28:59,530 [wrapper] Test setup, not cleaning
[2025-07-01 05:28:59] 2025-07-01 03:28:59,536 [wrapper] apfmon messages muted
[2025-07-01 05:28:59] 2025-07-01 03:28:59,540 [wrapper] ==== wrapper stdout END ====
[2025-07-01 05:28:59] 2025-07-01 03:28:59,544 [wrapper] ==== wrapper stderr END ====
[2025-07-01 05:28:59]  *** Error codes and diagnostics ***
[2025-07-01 05:28:59]     "exeErrorCode": 0,
[2025-07-01 05:28:59]     "exeErrorDiag": "",
[2025-07-01 05:28:59]     "pilotErrorCode": 1305,
[2025-07-01 05:28:59]     "pilotErrorDiag": "Failed to execute payload:/bin/bash: Gen_tf.py: command not found",
[2025-07-01 05:28:59]  *** Listing of results directory ***
[2025-07-01 05:28:59] insgesamt 46464
[2025-07-01 05:28:59] -rwx------ 1 boinc boinc    36292 Jul  1 05:08 runpilot2-wrapper.sh
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc     4402 Jul  1 05:08 queuedata.json
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc   530466 Jul  1 05:08 pilot3.tar.gz
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc 21839469 Jul  1 05:08 TXT.43313123._000152.tar.gz.1
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc      107 Jul  1 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-01 05:28:59] -rwxr-xr-x 1 boinc boinc     7986 Jul  1 05:24 run_atlas
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc      112 Jul  1 05:24 job.xml
[2025-07-01 05:28:59] -rw-r--r-- 2 boinc boinc 22272463 Jul  1 05:24 input.tar.gz
[2025-07-01 05:28:59] -rw-r--r-- 2 boinc boinc    17560 Jul  1 05:24 start_atlas.sh
[2025-07-01 05:28:59] drwxrwx--x 2 boinc boinc     4096 Jul  1 05:24 shared
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc     6146 Jul  1 05:24 init_data.xml
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc        0 Jul  1 05:24 boinc_lockfile
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc     2268 Jul  1 05:24 pandaJob.out
[2025-07-01 05:28:59] -rw------- 1 boinc boinc      424 Jul  1 05:24 setup.sh.local
[2025-07-01 05:28:59] -rw------- 1 boinc boinc   970033 Jul  1 05:24 agis_schedconf.cvmfs.json
[2025-07-01 05:28:59] -rw------- 1 boinc boinc  1574086 Jul  1 05:24 agis_ddmendpoints.agis.ALL.json
[2025-07-01 05:28:59] drwx------ 4 boinc boinc     4096 Jul  1 05:24 pilot3
[2025-07-01 05:28:59] -rw------- 1 boinc boinc     8330 Jul  1 05:26 2ad1a2da-1708-437c-a950-b34cff1b03e2_45241.job.log.tgz
[2025-07-01 05:28:59] -rw------- 1 boinc boinc     2275 Jul  1 05:28 heartbeat.json
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc     8192 Jul  1 05:28 boinc_mmap_file
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc       22 Jul  1 05:28 wrapper_checkpoint.txt
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc      528 Jul  1 05:28 boinc_task_state.xml
[2025-07-01 05:28:59] -rw------- 1 boinc boinc       95 Jul  1 05:28 pilot_heartbeat.json
[2025-07-01 05:28:59] -rw------- 1 boinc boinc      747 Jul  1 05:28 pilotlog.txt
[2025-07-01 05:28:59] -rw------- 1 boinc boinc    81879 Jul  1 05:28 2ad1a2da-1708-437c-a950-b34cff1b03e2_45241.job.log
[2025-07-01 05:28:59] -rw------- 1 boinc boinc      223 Jul  1 05:28 output.list
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc      850 Jul  1 05:28 runtime_log
[2025-07-01 05:28:59] -rw------- 1 boinc boinc   102400 Jul  1 05:28 result.tar.gz
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc    11453 Jul  1 05:28 runtime_log.err
[2025-07-01 05:28:59] -rw------- 1 boinc boinc      628 Jul  1 05:28 fGeNDmXXgq7n7OlckoGmwREmGgkVDo1bjSoqwWGKDmmKFKDmdMqD5n.diag
[2025-07-01 05:28:59] -rw-r--r-- 1 boinc boinc    21544 Jul  1 05:28 stderr.txt
[2025-07-01 05:28:59] No HITS result produced
[2025-07-01 05:28:59]  *** Contents of shared directory: ***
[2025-07-01 05:28:59] insgesamt 21872
[2025-07-01 05:28:59] -rw-r--r-- 2 boinc boinc 22272463 Jul  1 05:24 input.tar.gz
[2025-07-01 05:28:59] -rw-r--r-- 2 boinc boinc    17560 Jul  1 05:24 start_atlas.sh
[2025-07-01 05:28:59] -rw------- 1 boinc boinc   102400 Jul  1 05:28 result.tar.gz
05:29:00 (276566): run_atlas exited; CPU time 21.257027
05:29:00 (276566): called boinc_finish(0)

</stderr_txt>
]]>

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